FFCP PHASE1:Hg19::chr1:116908311..116908336,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:116908311..116908336,+
|short_description=p@chr1:116908311..116908336,+
|description=CAGE_peak_at_chr1:116908311..116908336,+
|association_with_transcript=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:116908311..116908336,+ | |||
|coexpression_cluster_id=C85 | |||
|description=CAGE_peak_at_chr1:116908311..116908336,+ | |||
|id=chr1:116908311..116908336,+ | |||
|ontology_enrichment_celltype=CL:0000242!1.72e-11!2 | |||
|ontology_enrichment_celltype_v019=CL:0000333;2.08e-27;5!CL:0000123;7.05e-18;2!CL:0000242;7.05e-18;2!CL:0002321;7.41e-10;15!CL:0000312;5.92e-08;5!CL:0000240;7.80e-07;6!CL:0000311;7.80e-07;6!CL:0000079;7.80e-07;6!CL:0000237;7.80e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,7.67e-18,2;CL:0000312,6.13e-08,5;CL:0000333,1.11e-07,41;CL:0000240,8.02e-07,6;CL:0000311,8.02e-07,6;CL:0000079,8.02e-07,6;CL:0000237,8.02e-07,6;CL:0000036,8.02e-07,6;CL:0000357,8.02e-07,6;CL:0000114,8.02e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000357;7.80e-07;6!CL:0000114;7.80e-07;6 | |||
|ontology_enrichment_disease=DOID:171!2.65e-31!10;DOID:169!7.34e-14!6;DOID:3095!1.54e-13!22;DOID:2994!1.54e-13!22 | |||
|ontology_enrichment_disease_v019=DOID:171;2.64e-30;10!DOID:169;4.86e-23;6!DOID:3095;2.92e-14;22!DOID:2994;2.92e-14;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,2.78e-30,10;DOID:169,4.86e-23,6;DOID:3095,2.99e-14,22;DOID:2994,2.99e-14,22 | |||
|ontology_enrichment_uberon=UBERON:0001950!3.85e-31!20;UBERON:0002619!3.22e-28!22;UBERON:0002780!2.65e-26!41;UBERON:0001890!2.65e-26!41;UBERON:0006240!2.65e-26!41;UBERON:0000073!4.12e-26!94;UBERON:0001016!4.12e-26!94;UBERON:0001869!6.37e-26!32;UBERON:0002346!1.19e-25!90;UBERON:0003080!1.31e-25!42;UBERON:0000956!1.12e-24!25;UBERON:0000203!1.12e-24!25;UBERON:0001893!2.87e-24!34;UBERON:0002020!3.04e-24!34;UBERON:0003528!3.04e-24!34;UBERON:0001049!2.95e-23!57;UBERON:0005068!2.95e-23!57;UBERON:0006241!2.95e-23!57;UBERON:0007135!2.95e-23!57;UBERON:0007023!7.24e-23!115;UBERON:0002616!2.40e-22!59;UBERON:0000924!3.63e-22!173;UBERON:0006601!3.63e-22!173;UBERON:0002791!1.60e-21!33;UBERON:0000955!1.36e-20!69;UBERON:0006238!1.36e-20!69;UBERON:0005743!9.95e-20!86;UBERON:0003056!5.03e-19!61;UBERON:0001017!1.01e-18!82;UBERON:0003075!6.66e-18!86;UBERON:0007284!6.66e-18!86;UBERON:0000013!1.31e-16!5;UBERON:0002410!1.31e-16!5;UBERON:0004121!2.07e-16!169;UBERON:0001872!3.02e-16!5;UBERON:0000200!2.62e-13!6;UBERON:0000033!1.48e-12!123;UBERON:0000153!9.09e-12!129;UBERON:0007811!9.09e-12!129;UBERON:0001905!2.73e-11!2;UBERON:0002757!2.73e-11!2;UBERON:0010134!2.73e-11!2;UBERON:0002784!2.73e-11!2;UBERON:0005408!2.73e-11!2;UBERON:0001899!2.73e-11!2;UBERON:0001870!5.81e-11!2;UBERON:0002021!1.40e-09!5;UBERON:0000010!2.88e-09!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;2.08e-27;5!UBERON:0002410;2.08e-27;5!UBERON:0000010;9.73e-16;8!UBERON:0002346;1.63e-09;4!UBERON:0000923;1.63e-09;4!UBERON:0010316;1.63e-09;4!UBERON:0005291;1.63e-09;4!UBERON:0002021;7.25e-08;5!UBERON:0002050;7.25e-08;5!UBERON:0005423;7.25e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,2.08e-27,5;UBERON:0002410,2.08e-27,5;UBERON:0000010,9.73e-16,8;UBERON:0002021,7.01e-08,5 | |||
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|short_description=p@chr1:116908311..116908336,+ | |||
}} | }} |
Latest revision as of 20:04, 27 July 2015
Short description: | p@chr1:116908311..116908336, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:116908311..116908336, + |
Coexpression cluster: | C85_neuroblastoma_carcinoid_retinoblastoma_small_pineal_rhabdomyosarcoma_medulloblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 7.67e-18 | 2 |
keratinocyte | 6.13e-08 | 5 |
migratory neural crest cell | 1.11e-07 | 41 |
stratified squamous epithelial cell | 8.02e-07 | 6 |
keratin accumulating cell | 8.02e-07 | 6 |
stratified epithelial cell | 8.02e-07 | 6 |
keratinizing barrier epithelial cell | 8.02e-07 | 6 |
epithelial fate stem cell | 8.02e-07 | 6 |
stratified epithelial stem cell | 8.02e-07 | 6 |
surface ectodermal cell | 8.02e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 2.08e-27 | 5 |
autonomic nervous system | 2.08e-27 | 5 |
peripheral nervous system | 9.73e-16 | 8 |
occipital lobe | 7.01e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 2.78e-30 | 10 |
neuroendocrine tumor | 4.86e-23 | 6 |
germ cell and embryonal cancer | 2.99e-14 | 22 |
germ cell cancer | 2.99e-14 | 22 |