FFCP PHASE1:Hg19::chr1:218579326..218579337,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:218579326..218579337,+ | |||
|description=CAGE_peak_at_chr1:218579326..218579337,+ | |description=CAGE_peak_at_chr1:218579326..218579337,+ | ||
|id=chr1:218579326..218579337,+ | |id=chr1:218579326..218579337,+ | ||
|ontology_enrichment_celltype=CL:0000064!2.36e-07!3;CL:0005012!2.36e-07!3;CL:0000067!2.36e-07!3;CL:0002304!2.36e-07!3;CL:1000306!3.74e-07!4;CL:0002547!3.74e-07!4 | |ontology_enrichment_celltype=CL:0000064!2.36e-07!3;CL:0005012!2.36e-07!3;CL:0000067!2.36e-07!3;CL:0002304!2.36e-07!3;CL:1000306!3.74e-07!4;CL:0002547!3.74e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000064;3.35e-66;3!CL:0000067;3.35e-66;3!CL:0005012;3.35e-66;3!CL:0002304;3.35e-66;3!CL:0000710;5.70e-11;20!CL:0000075;2.13e-08;27!CL:0002077;3.58e-07;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,1.71e-66,3;CL:0000067,1.71e-66,3;CL:0005012,1.71e-66,3;CL:0002304,1.71e-66,3;CL:0000710,5.16e-11,20;CL:0000075,1.98e-08,27;CL:0002077,6.75e-07,34 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001778!2.36e-07!3;UBERON:0001775!2.36e-07!3;UBERON:0000415!3.74e-07!4;UBERON:0007240!3.74e-07!4;UBERON:0005742!3.74e-07!4;UBERON:0005734!3.74e-07!4;UBERON:0004664!3.74e-07!4;UBERON:0004663!3.74e-07!4 | |ontology_enrichment_uberon=UBERON:0001778!2.36e-07!3;UBERON:0001775!2.36e-07!3;UBERON:0000415!3.74e-07!4;UBERON:0007240!3.74e-07!4;UBERON:0005742!3.74e-07!4;UBERON:0005734!3.74e-07!4;UBERON:0004664!3.74e-07!4;UBERON:0004663!3.74e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0001778;3.35e-66;3!UBERON:0001775;3.35e-66;3!UBERON:0000488;5.13e-50;4!UBERON:0002203;8.35e-34;6!UBERON:0001768;8.35e-34;6!UBERON:0002200;8.35e-34;6!UBERON:0007625;5.14e-19;11!UBERON:0006876;5.14e-19;11!UBERON:0001801;3.41e-15;14!UBERON:0000019;1.72e-11;19!UBERON:0000047;1.72e-11;19!UBERON:0004088;1.72e-11;19!UBERON:0010230;1.72e-11;19!UBERON:0000970;5.70e-11;20!UBERON:0002104;1.69e-10;21!UBERON:0001456;1.69e-10;21!UBERON:0000020;1.12e-09;23!UBERON:0001032;2.56e-09;24!UBERON:0004456;2.56e-09;24!UBERON:0010371;3.58e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,1.71e-66,3;UBERON:0001775,1.71e-66,3;UBERON:0000488,3.11e-50,4;UBERON:0002203,5.98e-34,6;UBERON:0001768,5.98e-34,6;UBERON:0002200,5.98e-34,6;UBERON:0007625,4.28e-19,11;UBERON:0006876,4.28e-19,11;UBERON:0001801,2.95e-15,14;UBERON:0000019,5.16e-11,20;UBERON:0000047,5.16e-11,20;UBERON:0010312,5.16e-11,20;UBERON:0004088,5.16e-11,20;UBERON:0010230,5.16e-11,20;UBERON:0003072,5.16e-11,20;UBERON:0004128,5.16e-11,20;UBERON:0003071,5.16e-11,20;UBERON:0000970,1.53e-10,21;UBERON:0002104,1.53e-10,21;UBERON:0001456,4.14e-10,22;UBERON:0000020,2.35e-09,24;UBERON:0001032,2.35e-09,24;UBERON:0004456,2.35e-09,24;UBERON:0005085,1.80e-07,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0.273748850145768,0.87879847716362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850813354476611,1.55210578223795,1.40535657109002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.132409180813219,0.286836620748814,0.354668382198357,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0.494533858557114,0,0,0,0,0,0,0,0,0,0.358779271377724,0,0.211931901159562,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0.356857977594324,0.157702415033935,0.35142424497814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601519410909855,0.0920809889358963,0,0,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.082509499920588,0,0,0,0,0,0,0.137836572484531,0,0,0.0852266274161009,0,0,0,0.382838137483752,0,0,0,0,0,0,0,0,0.143124886741991,0.372158369359667,0,0,0,0,0,0,0.179872457583315,0.274537029736055,0.235624804691373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568272293612826,0,0,0,0,0.140669416410513,0.111308705022906,0,1.26675244876796,0,0,0,0.102268682502155,0,0,0.0898683511473268,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0.455768223388005,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664653872707185,0.661983911750998,0.627865836814451,0,0,0,0,0,0,0.17472666824203,0.687944129886466,0,0,0,0,0,0.225980740780532,0,0,0,0.195551382734803,0.160317640503067,0,0.599428828746391,0,0.458146384663663,0.171594997861965,0,0.248505071130865,0,0.135904206073614,0.104602846312333,0.509991088181609,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0.179287339332845,0,0,0,0,0,0,0,0,0,0.511164065356265,0.453248366080503,0,0,0.129282956361551,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0.573409195690071,0.110929051536852,0,0.138348634936231,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0.219284049578707,0,0,0,0,0.345430341731199,0,0.138258436151731,0,0,0,0.982829546539238,0.245772908753719,0,0,0,0.172214979660816,0,0,0,0,0.255788742607303,0,0,0,0,0.212574920101683,0,0,0,0,0,0,0.3062454773532,0,0,0,0.205116364240755,0.252071696221718,0,0.161475645631851,0,0,0,0,0.115525666150338,0.762764190934334,0,0,0,1.21023041222112,0,0,0.327543835020193,0,0,0,0.206686796501184,0,0,0,0,0,0.894336993477167,0,0,0,0,0,0,0.171488009437418,0,0,0.118193840883968,0,0.235479278551542,0,0,0,0.215927591218621,0.47775168788705,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0,0,0,0,0.198950775161368,0,0.11294608203896,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0.0939839179798536,0,0,0.178553938605658,0,0.0802413666891683,0,0,0.286679166302903,0.315543124386369,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0.829169439458779,0,0.213233981900981,0.476128862927481,0,0,0,0,0,0,0,0,0,0.332660356546013,0,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0.273748850145768,0.87879847716362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850813354476611,1.55210578223795,1.40535657109002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.132409180813219,0.286836620748814,0.354668382198357,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0.494533858557114,0,0,0,0,0,0,0,0,0,0.358779271377724,0,0.211931901159562,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0.356857977594324,0.157702415033935,0.35142424497814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601519410909855,0.0920809889358963,0,0,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.082509499920588,0,0,0,0,0,0,0.137836572484531,0,0,0.0852266274161009,0,0,0,0.382838137483752,0,0,0,0,0,0,0,0,0.143124886741991,0.372158369359667,0,0,0,0,0,0,0.179872457583315,0.274537029736055,0.235624804691373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568272293612826,0,0,0,0,0.140669416410513,0.111308705022906,0,1.26675244876796,0,0,0,0.102268682502155,0,0,0.0898683511473268,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0.455768223388005,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664653872707185,0.661983911750998,0.627865836814451,0,0,0,0,0,0,0.17472666824203,0.687944129886466,0,0,0,0,0,0.225980740780532,0,0,0,0.195551382734803,0.160317640503067,0,0.599428828746391,0,0.458146384663663,0.171594997861965,0,0.248505071130865,0,0.135904206073614,0.104602846312333,0.509991088181609,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0.179287339332845,0,0,0,0,0,0,0,0,0,0.511164065356265,0.453248366080503,0,0,0.129282956361551,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0.573409195690071,0.110929051536852,0,0.138348634936231,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0.219284049578707,0,0,0,0,0.345430341731199,0,0.138258436151731,0,0,0,0.982829546539238,0.245772908753719,0,0,0,0.172214979660816,0,0,0,0,0.255788742607303,0,0,0,0,0.212574920101683,0,0,0,0,0,0,0.3062454773532,0,0,0,0.205116364240755,0.252071696221718,0,0.161475645631851,0,0,0,0,0.115525666150338,0.762764190934334,0,0,0,1.21023041222112,0,0,0.327543835020193,0,0,0,0.206686796501184,0,0,0,0,0,0.894336993477167,0,0,0,0,0,0,0.171488009437418,0,0,0.118193840883968,0,0.235479278551542,0,0,0,0.215927591218621,0.47775168788705,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0,0,0,0,0.198950775161368,0,0.11294608203896,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0.0939839179798536,0,0,0.178553938605658,0,0.0802413666891683,0,0,0.286679166302903,0.315543124386369,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0.829169439458779,0,0.213233981900981,0.476128862927481,0,0,0,0,0,0,0,0,0,0.332660356546013,0,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:218579326..218579337,+ | |short_description=p@chr1:218579326..218579337,+ | ||
}} | }} |
Latest revision as of 03:58, 28 July 2015
Short description: | p@chr1:218579326..218579337, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:218579326..218579337, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 1.71e-66 | 3 |
ciliated epithelial cell | 1.71e-66 | 3 |
multi-ciliated epithelial cell | 1.71e-66 | 3 |
non-pigmented ciliary epithelial cell | 1.71e-66 | 3 |
neurecto-epithelial cell | 5.16e-11 | 20 |
columnar/cuboidal epithelial cell | 1.98e-08 | 27 |
ecto-epithelial cell | 6.75e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
ciliary epithelium | 1.71e-66 | 3 |
ciliary body | 1.71e-66 | 3 |
atypical epithelium | 3.11e-50 | 4 |
vasculature of eye | 5.98e-34 | 6 |
uvea | 5.98e-34 | 6 |
vasculature of head | 5.98e-34 | 6 |
pigment epithelium of eye | 4.28e-19 | 11 |
vasculature of organ | 4.28e-19 | 11 |
anterior segment of eyeball | 2.95e-15 | 14 |
camera-type eye | 5.16e-11 | 20 |
simple eye | 5.16e-11 | 20 |
immature eye | 5.16e-11 | 20 |
ocular region | 5.16e-11 | 20 |
eyeball of camera-type eye | 5.16e-11 | 20 |
optic cup | 5.16e-11 | 20 |
optic vesicle | 5.16e-11 | 20 |
eye primordium | 5.16e-11 | 20 |
eye | 1.53e-10 | 21 |
visual system | 1.53e-10 | 21 |
face | 4.14e-10 | 22 |
sense organ | 2.35e-09 | 24 |
sensory system | 2.35e-09 | 24 |
entire sense organ system | 2.35e-09 | 24 |
ectodermal placode | 1.80e-07 | 31 |