FFCP PHASE1:Hg19::chr2:62668844..62668859,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:62668844..62668859,+ | |||
|coexpression_cluster_id=C2451 | |coexpression_cluster_id=C2451 | ||
|description=CAGE_peak_at_chr2:62668844..62668859,+ | |description=CAGE_peak_at_chr2:62668844..62668859,+ | ||
|id=chr2:62668844..62668859,+ | |id=chr2:62668844..62668859,+ | ||
|ontology_enrichment_celltype=CL:0002623!2.95e-31!3;CL:0000622!4.98e-19!5;CL:0000154!5.82e-16!6;CL:0002166!2.59e-14!3;CL:0002621!7.51e-14!3;CL:0002251!8.02e-12!21;CL:0000150!7.90e-11!9;CL:0002076!6.16e-08!43;CL:0002159!1.68e-07!13 | |ontology_enrichment_celltype=CL:0002623!2.95e-31!3;CL:0000622!4.98e-19!5;CL:0000154!5.82e-16!6;CL:0002166!2.59e-14!3;CL:0002621!7.51e-14!3;CL:0002251!8.02e-12!21;CL:0000150!7.90e-11!9;CL:0002076!6.16e-08!43;CL:0002159!1.68e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0002623;1.80e-38;3!CL:0000622;1.44e-23;5!CL:0000154;7.84e-20;6!CL:0000150;1.40e-13;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002623,1.49e-38,3;CL:0000622,1.28e-23,5;CL:0000154,7.13e-20,6;CL:0000150,1.31e-13,9 | |||
|ontology_enrichment_development_v019=UBERON:0009143;2.73e-29;1!UBERON:0008814;1.15e-15;2!UBERON:0010056;1.15e-15;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000166!8.09e-30!21;UBERON:0000165!3.77e-22!28;UBERON:0000930!3.77e-22!28;UBERON:0003127!1.57e-20!2;UBERON:0000078!3.72e-20!18;UBERON:0001004!4.10e-18!72;UBERON:0000161!1.53e-17!35;UBERON:0001042!1.74e-16!10;UBERON:0009145!1.74e-16!10;UBERON:0003408!2.30e-16!10;UBERON:0001044!5.82e-16!6;UBERON:0003293!5.82e-16!6;UBERON:0003294!5.82e-16!6;UBERON:0010047!5.82e-16!6;UBERON:0000167!5.82e-16!6;UBERON:0006562!5.19e-15!11;UBERON:0001723!8.77e-15!3;UBERON:0001033!8.77e-15!3;UBERON:0010056!8.77e-15!3;UBERON:0001949!7.51e-14!3;UBERON:0001444!1.55e-12!48;UBERON:0002372!1.06e-11!1;UBERON:0001961!1.06e-11!1;UBERON:0001744!1.06e-11!1;UBERON:0001735!1.06e-11!1;UBERON:0000989!2.68e-11!1;UBERON:0008811!2.68e-11!1;UBERON:0006258!2.68e-11!1;UBERON:0005876!2.68e-11!1;UBERON:0004874!2.68e-11!1;UBERON:0001708!5.72e-11!4;UBERON:0001704!5.72e-11!4;UBERON:0001041!8.96e-11!98;UBERON:0000072!5.94e-10!46;UBERON:0000153!3.36e-09!129;UBERON:0007811!3.36e-09!129;UBERON:0001007!8.35e-09!155;UBERON:0001555!8.35e-09!155;UBERON:0007026!8.35e-09!155;UBERON:0001557!8.97e-09!19;UBERON:0000065!1.52e-08!53;UBERON:0004119!6.56e-08!169;UBERON:0000925!6.56e-08!169;UBERON:0006595!6.56e-08!169;UBERON:0000077!1.04e-07!130;UBERON:0004921!1.04e-07!129;UBERON:0004185!1.04e-07!129;UBERON:0002090!1.34e-07!6;UBERON:0003102!2.07e-07!95;UBERON:0007196!7.58e-07!14;UBERON:0001558!7.58e-07!14 | |ontology_enrichment_uberon=UBERON:0000166!8.09e-30!21;UBERON:0000165!3.77e-22!28;UBERON:0000930!3.77e-22!28;UBERON:0003127!1.57e-20!2;UBERON:0000078!3.72e-20!18;UBERON:0001004!4.10e-18!72;UBERON:0000161!1.53e-17!35;UBERON:0001042!1.74e-16!10;UBERON:0009145!1.74e-16!10;UBERON:0003408!2.30e-16!10;UBERON:0001044!5.82e-16!6;UBERON:0003293!5.82e-16!6;UBERON:0003294!5.82e-16!6;UBERON:0010047!5.82e-16!6;UBERON:0000167!5.82e-16!6;UBERON:0006562!5.19e-15!11;UBERON:0001723!8.77e-15!3;UBERON:0001033!8.77e-15!3;UBERON:0010056!8.77e-15!3;UBERON:0001949!7.51e-14!3;UBERON:0001444!1.55e-12!48;UBERON:0002372!1.06e-11!1;UBERON:0001961!1.06e-11!1;UBERON:0001744!1.06e-11!1;UBERON:0001735!1.06e-11!1;UBERON:0000989!2.68e-11!1;UBERON:0008811!2.68e-11!1;UBERON:0006258!2.68e-11!1;UBERON:0005876!2.68e-11!1;UBERON:0004874!2.68e-11!1;UBERON:0001708!5.72e-11!4;UBERON:0001704!5.72e-11!4;UBERON:0001041!8.96e-11!98;UBERON:0000072!5.94e-10!46;UBERON:0000153!3.36e-09!129;UBERON:0007811!3.36e-09!129;UBERON:0001007!8.35e-09!155;UBERON:0001555!8.35e-09!155;UBERON:0007026!8.35e-09!155;UBERON:0001557!8.97e-09!19;UBERON:0000065!1.52e-08!53;UBERON:0004119!6.56e-08!169;UBERON:0000925!6.56e-08!169;UBERON:0006595!6.56e-08!169;UBERON:0000077!1.04e-07!130;UBERON:0004921!1.04e-07!129;UBERON:0004185!1.04e-07!129;UBERON:0002090!1.34e-07!6;UBERON:0003102!2.07e-07!95;UBERON:0007196!7.58e-07!14;UBERON:0001558!7.58e-07!14 | ||
|ontology_enrichment_uberon_v019=UBERON:0001723;1.35e-38;3!UBERON:0001033;1.35e-38;3!UBERON:0002372;1.15e-29;1!UBERON:0001961;1.15e-29;1!UBERON:0001744;1.15e-29;1!UBERON:0001042;1.15e-29;1!UBERON:0001735;1.15e-29;1!UBERON:0000165;1.37e-25;28!UBERON:0001044;7.84e-20;6!UBERON:0003293;7.84e-20;6!UBERON:0003294;7.84e-20;6!UBERON:0010047;7.84e-20;6!UBERON:0003408;7.84e-20;6!UBERON:0000167;7.84e-20;6!UBERON:0001041;7.55e-19;14!UBERON:0006562;1.43e-15;2!UBERON:0000341;2.21e-15;2!UBERON:0000161;3.70e-14;19!UBERON:0000166;3.70e-14;19!UBERON:0004921;3.93e-12;33!UBERON:0007811;3.10e-11;52!UBERON:0001043;1.04e-10;3!UBERON:0000153;1.33e-10;54!UBERON:0001555;1.66e-09;54!UBERON:0000033;2.92e-09;50!UBERON:0001444;2.45e-07;48 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001723,1.01e-38,3;UBERON:0001033,1.01e-38,3;UBERON:0010056,1.01e-38,3;UBERON:0000166,1.78e-32,22;UBERON:0002372,1.33e-29,1;UBERON:0001961,1.33e-29,1;UBERON:0001744,1.33e-29,1;UBERON:0001735,1.33e-29,1;UBERON:0001042,3.03e-26,10;UBERON:0009145,3.03e-26,10;UBERON:0000165,9.08e-25,29;UBERON:0000930,9.08e-25,29;UBERON:0006562,6.11e-24,11;UBERON:0000161,4.78e-20,36;UBERON:0001044,7.13e-20,6;UBERON:0003293,7.13e-20,6;UBERON:0003294,7.13e-20,6;UBERON:0010047,7.13e-20,6;UBERON:0000167,7.13e-20,6;UBERON:0000153,1.09e-16,62;UBERON:0007811,1.09e-16,62;UBERON:0000341,2.74e-15,2;UBERON:0001444,7.67e-15,49;UBERON:0001557,3.31e-14,19;UBERON:0000033,4.93e-13,56;UBERON:0003408,2.37e-12,10;UBERON:0001041,5.57e-12,87;UBERON:0001043,1.09e-10,3;UBERON:0009143,1.09e-10,3;UBERON:0001004,6.07e-10,74;UBERON:0004921,8.24e-09,118;UBERON:0003102,1.70e-07,99;UBERON:0008814,2.60e-07,18;UBERON:0001007,3.33e-07,145;UBERON:0001555,3.33e-07,145;UBERON:0007026,3.33e-07,145 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658501712451753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503946384596579,0.567100388969546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35784623083787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.828864656652147,2.90221411059715,1.38251932362818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0661699095049,0,0,0.0620747142958579,0,0,0,3.70118471424834,1.71116650542641,2.76143417359809,0.286888821570705,0.332660356546013,0,0,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658501712451753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503946384596579,0.567100388969546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35784623083787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.828864656652147,2.90221411059715,1.38251932362818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0661699095049,0,0,0.0620747142958579,0,0,0,3.70118471424834,1.71116650542641,2.76143417359809,0.286888821570705,0.332660356546013,0,0,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p@chr2:62668844..62668859,+ | |short_description=p@chr2:62668844..62668859,+ | ||
}} | }} |
Latest revision as of 11:17, 29 July 2015
Short description: | p@chr2:62668844..62668859, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:62668844..62668859, + |
Coexpression cluster: | C2451_salivary_esophagus_tonsil_tongue_trachea_throat_cervix |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
acinar cell of salivary gland | 1.49e-38 | 3 |
acinar cell | 1.28e-23 | 5 |
protein secreting cell | 7.13e-20 | 6 |
glandular epithelial cell | 1.31e-13 | 9 |
Ontology term | p-value | n |
---|---|---|
tongue | 1.01e-38 | 3 |
gustatory system | 1.01e-38 | 3 |
future tongue | 1.01e-38 | 3 |
oral opening | 1.78e-32 | 22 |
tonsil | 1.33e-29 | 1 |
mucosa-associated lymphoid tissue | 1.33e-29 | 1 |
lymphoid tissue | 1.33e-29 | 1 |
tonsillar ring | 1.33e-29 | 1 |
chordate pharynx | 3.03e-26 | 10 |
pharyngeal region of foregut | 3.03e-26 | 10 |
mouth | 9.08e-25 | 29 |
stomodeum | 9.08e-25 | 29 |
pharynx | 6.11e-24 | 11 |
orifice | 4.78e-20 | 36 |
saliva-secreting gland | 7.13e-20 | 6 |
gland of oral region | 7.13e-20 | 6 |
gland of foregut | 7.13e-20 | 6 |
oral gland | 7.13e-20 | 6 |
oral cavity | 7.13e-20 | 6 |
anterior region of body | 1.09e-16 | 62 |
craniocervical region | 1.09e-16 | 62 |
throat | 2.74e-15 | 2 |
subdivision of head | 7.67e-15 | 49 |
upper respiratory tract | 3.31e-14 | 19 |
head | 4.93e-13 | 56 |
gland of gut | 2.37e-12 | 10 |
foregut | 5.57e-12 | 87 |
esophagus | 1.09e-10 | 3 |
esophageal region | 1.09e-10 | 3 |
respiratory system | 6.07e-10 | 74 |
subdivision of digestive tract | 8.24e-09 | 118 |
surface structure | 1.70e-07 | 99 |
pharyngeal arch system | 2.60e-07 | 18 |
digestive system | 3.33e-07 | 145 |
digestive tract | 3.33e-07 | 145 |
primitive gut | 3.33e-07 | 145 |