FFCP PHASE1:Hg19::chr3:50193414..50193456,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:50193414..50193456,- to FFCP PHASE1:Hg19::chr3:50193414..50193456,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000425674_5end | |||
|cluster_id=chr3:50193414..50193456,- | |||
|description=CAGE_peak_1_at_ENST00000425674_5end | |||
|id=chr3:50193414..50193456,- | |||
|ontology_enrichment_celltype=CL:0002139!4.36e-08!24;CL:0000071!2.00e-07!18;CL:0002546!2.00e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000064;9.56e-19;3!CL:0000067;9.56e-19;3!CL:0005012;9.56e-19;3!CL:0002304;9.56e-19;3!CL:0002149;4.62e-09;6!CL:0002255;4.62e-09;6!CL:0002603;1.48e-08;3!CL:0000342;7.55e-07;1!CL:0002565;7.55e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,9.65e-19,3;CL:0000067,9.65e-19,3;CL:0005012,9.65e-19,3;CL:0002304,9.65e-19,3;CL:0002149,2.74e-09,6;CL:0002255,2.74e-09,6;CL:0002603,1.38e-08,3;CL:0000342,8.02e-07,1;CL:0002565,8.02e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0010115;7.55e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3001;4.62e-09;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3001,2.74e-09,6 | |||
|ontology_enrichment_uberon=UBERON:0003075!2.08e-18!86;UBERON:0007284!2.08e-18!86;UBERON:0002346!6.66e-17!90;UBERON:0005743!3.80e-14!86;UBERON:0003056!7.72e-14!61;UBERON:0000483!2.12e-12!309;UBERON:0000073!2.81e-12!94;UBERON:0001016!2.81e-12!94;UBERON:0000119!5.13e-12!312;UBERON:0000153!1.39e-11!129;UBERON:0007811!1.39e-11!129;UBERON:0001017!1.54e-11!82;UBERON:0007625!1.69e-11!11;UBERON:0002616!4.30e-11!59;UBERON:0000033!4.96e-11!123;UBERON:0001049!6.44e-11!57;UBERON:0005068!6.44e-11!57;UBERON:0006241!6.44e-11!57;UBERON:0007135!6.44e-11!57;UBERON:0007023!2.00e-10!115;UBERON:0000955!2.76e-10!69;UBERON:0006238!2.76e-10!69;UBERON:0000468!9.49e-10!659;UBERON:0004121!1.14e-09!169;UBERON:0000477!1.43e-09!286;UBERON:0000019!2.25e-09!19;UBERON:0000047!2.25e-09!19;UBERON:0004088!2.25e-09!19;UBERON:0003072!2.25e-09!19;UBERON:0003071!2.25e-09!19;UBERON:0004128!2.25e-09!19;UBERON:0000924!4.49e-09!173;UBERON:0006601!4.49e-09!173;UBERON:0000970!1.07e-08!20;UBERON:0001893!1.13e-08!34;UBERON:0002791!3.07e-08!33;UBERON:0000020!4.19e-08!23;UBERON:0002104!4.33e-08!21;UBERON:0001456!4.33e-08!21;UBERON:0002020!5.12e-08!34;UBERON:0003528!5.12e-08!34;UBERON:0000064!9.60e-08!219;UBERON:0004111!1.30e-07!241;UBERON:0001869!1.31e-07!32;UBERON:0001032!1.37e-07!24;UBERON:0004456!1.37e-07!24;UBERON:0000922!1.52e-07!612;UBERON:0000481!1.97e-07!347;UBERON:0001986!2.00e-07!18;UBERON:0004638!2.00e-07!18;UBERON:0004852!2.00e-07!18;UBERON:0000467!2.25e-07!625;UBERON:0000480!2.68e-07!626;UBERON:0002780!3.73e-07!41;UBERON:0001890!3.73e-07!41;UBERON:0006240!3.73e-07!41;UBERON:0000025!4.44e-07!194;UBERON:0002113!7.44e-07!27;UBERON:0003918!7.44e-07!27;UBERON:0005095!7.44e-07!27;UBERON:0007687!7.44e-07!27;UBERON:0003080!7.47e-07!42;UBERON:0000956!8.08e-07!25;UBERON:0000203!8.08e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;1.12e-24;11!UBERON:0000488;7.27e-24;4!UBERON:0001778;9.56e-19;3!UBERON:0001775;9.56e-19;3!UBERON:0000019;5.14e-18;19!UBERON:0000047;5.14e-18;19!UBERON:0004088;5.14e-18;19!UBERON:0010230;5.14e-18;19!UBERON:0000970;4.70e-17;20!UBERON:0002104;3.48e-16;21!UBERON:0001456;3.48e-16;21!UBERON:0002203;5.75e-16;6!UBERON:0001768;5.75e-16;6!UBERON:0002200;5.75e-16;6!UBERON:0000020;1.14e-14;23!UBERON:0001801;2.56e-14;14!UBERON:0001032;5.21e-14;24!UBERON:0004456;5.21e-14;24!UBERON:0006876;9.49e-09;11!UBERON:0010371;1.27e-07;31!UBERON:0001301;3.16e-07;1!UBERON:0002363;7.55e-07;1!UBERON:0002171;7.55e-07;1!UBERON:0006518;7.55e-07;1!UBERON:0008949;7.55e-07;1!UBERON:0000101;7.55e-07;1!UBERON:0002506;7.55e-07;1!UBERON:0002167;7.55e-07;1!UBERON:0001769;7.55e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,1.35e-24,11;UBERON:0000488,7.80e-24,4;UBERON:0001778,9.65e-19,3;UBERON:0001775,9.65e-19,3;UBERON:0000019,3.99e-17,20;UBERON:0000047,3.99e-17,20;UBERON:0010312,3.99e-17,20;UBERON:0004088,3.99e-17,20;UBERON:0010230,3.99e-17,20;UBERON:0003072,3.99e-17,20;UBERON:0004128,3.99e-17,20;UBERON:0003071,3.99e-17,20;UBERON:0000970,2.98e-16,21;UBERON:0002104,2.98e-16,21;UBERON:0002203,6.01e-16,6;UBERON:0001768,6.01e-16,6;UBERON:0002200,6.01e-16,6;UBERON:0001456,1.85e-15,22;UBERON:0001801,2.64e-14,14;UBERON:0000020,4.55e-14,24;UBERON:0001032,4.55e-14,24;UBERON:0004456,4.55e-14,24;UBERON:0005085,1.29e-10,31;UBERON:0006876,9.72e-09,11;UBERON:0003887,1.59e-07,12;UBERON:0002113,2.95e-07,26;UBERON:0003918,2.95e-07,26;UBERON:0011143,2.95e-07,26;UBERON:0005095,2.95e-07,26;UBERON:0007687,2.95e-07,26;UBERON:0001301,2.99e-07,1;UBERON:0002506,8.02e-07,1;UBERON:0001769,8.02e-07,1 | |||
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| ||
|short_description=p1@ENST00000425674 | |||
}} | }} |
Latest revision as of 22:00, 29 July 2015
Short description: | p1@ENST00000425674 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000425674_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000425674_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 9.65e-19 | 3 |
ciliated epithelial cell | 9.65e-19 | 3 |
multi-ciliated epithelial cell | 9.65e-19 | 3 |
non-pigmented ciliary epithelial cell | 9.65e-19 | 3 |
epithelial cell of uterus | 2.74e-09 | 6 |
stromal cell of endometrium | 2.74e-09 | 6 |
astrocyte of the cerebellum | 1.38e-08 | 3 |
pigment cell (sensu Vertebrata) | 8.02e-07 | 1 |
iris pigment epithelial cell | 8.02e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 1.35e-24 | 11 |
atypical epithelium | 7.80e-24 | 4 |
ciliary epithelium | 9.65e-19 | 3 |
ciliary body | 9.65e-19 | 3 |
camera-type eye | 3.99e-17 | 20 |
simple eye | 3.99e-17 | 20 |
immature eye | 3.99e-17 | 20 |
ocular region | 3.99e-17 | 20 |
eyeball of camera-type eye | 3.99e-17 | 20 |
optic cup | 3.99e-17 | 20 |
optic vesicle | 3.99e-17 | 20 |
eye primordium | 3.99e-17 | 20 |
eye | 2.98e-16 | 21 |
visual system | 2.98e-16 | 21 |
vasculature of eye | 6.01e-16 | 6 |
uvea | 6.01e-16 | 6 |
vasculature of head | 6.01e-16 | 6 |
face | 1.85e-15 | 22 |
anterior segment of eyeball | 2.64e-14 | 14 |
sense organ | 4.55e-14 | 24 |
sensory system | 4.55e-14 | 24 |
entire sense organ system | 4.55e-14 | 24 |
ectodermal placode | 1.29e-10 | 31 |
vasculature of organ | 9.72e-09 | 11 |
intraembryonic coelom | 1.59e-07 | 12 |
kidney | 2.95e-07 | 26 |
kidney mesenchyme | 2.95e-07 | 26 |
upper urinary tract | 2.95e-07 | 26 |
kidney rudiment | 2.95e-07 | 26 |
kidney field | 2.95e-07 | 26 |
epididymis | 2.99e-07 | 1 |
iris epithelium | 8.02e-07 | 1 |
iris | 8.02e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 2.74e-09 | 6 |