FFCP PHASE1:Hg19::chr5:78112479..78112482,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:78112479..78112482,+ | |||
|coexpression_cluster_id=C1408 | |||
|description=CAGE_peak_at_chr5:78112479..78112482,+ | |description=CAGE_peak_at_chr5:78112479..78112482,+ | ||
|id=chr5:78112479..78112482,+ | |id=chr5:78112479..78112482,+ | ||
|ontology_enrichment_celltype=CL:0000064!5.07e-27!3;CL:0005012!5.07e-27!3;CL:0000067!5.07e-27!3;CL:0002304!5.07e-27!3;CL:0000342!1.65e-10!1;CL:0002565!1.65e-10!1;CL:0000319!2.16e-10!1 | |ontology_enrichment_celltype=CL:0000064!5.07e-27!3;CL:0005012!5.07e-27!3;CL:0000067!5.07e-27!3;CL:0002304!5.07e-27!3;CL:0000342!1.65e-10!1;CL:0002565!1.65e-10!1;CL:0000319!2.16e-10!1 | ||
|ontology_enrichment_celltype_v019=CL:0000342;1.23e-66;1!CL:0002565;1.23e-66;1!CL:0000064;3.27e-23;3!CL:0000067;3.27e-23;3!CL:0005012;3.27e-23;3!CL:0002304;3.27e-23;3!CL:0000039;9.89e-11;7!CL:0000586;9.89e-11;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000342,1.23e-66,1;CL:0002565,1.23e-66,1;CL:0000064,3.27e-23,3;CL:0000067,3.27e-23,3;CL:0005012,3.27e-23,3;CL:0002304,3.27e-23,3;CL:0000039,9.89e-11,7;CL:0000586,9.89e-11,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;6.56e-08;10!UBERON:0005564;6.56e-08;10 | |||
|ontology_enrichment_disease=DOID:3030!2.16e-10!1 | |ontology_enrichment_disease=DOID:3030!2.16e-10!1 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000488!9.81e-36!4;UBERON:0007625!2.02e-28!11;UBERON:0001778!5.07e-27!3;UBERON:0001775!5.07e-27!3;UBERON:0002203!6.14e-24!6;UBERON:0001768!6.14e-24!6;UBERON:0000019!2.70e-16!19;UBERON:0000047!2.70e-16!19;UBERON:0004088!2.70e-16!19;UBERON:0003072!2.70e-16!19;UBERON:0003071!2.70e-16!19;UBERON:0004128!2.70e-16!19;UBERON:0001801!1.02e-15!14;UBERON:0000970!1.85e-15!20;UBERON:0002104!1.06e-14!21;UBERON:0001456!1.06e-14!21;UBERON:0000020!2.19e-13!23;UBERON:0002200!3.61e-13!11;UBERON:0006876!3.61e-13!11;UBERON:0001032!8.25e-13!24;UBERON:0004456!8.25e-13!24;UBERON:0005085!1.60e-10!29;UBERON:0002506!1.65e-10!1;UBERON:0001769!1.65e-10!1 | |ontology_enrichment_uberon=UBERON:0000488!9.81e-36!4;UBERON:0007625!2.02e-28!11;UBERON:0001778!5.07e-27!3;UBERON:0001775!5.07e-27!3;UBERON:0002203!6.14e-24!6;UBERON:0001768!6.14e-24!6;UBERON:0000019!2.70e-16!19;UBERON:0000047!2.70e-16!19;UBERON:0004088!2.70e-16!19;UBERON:0003072!2.70e-16!19;UBERON:0003071!2.70e-16!19;UBERON:0004128!2.70e-16!19;UBERON:0001801!1.02e-15!14;UBERON:0000970!1.85e-15!20;UBERON:0002104!1.06e-14!21;UBERON:0001456!1.06e-14!21;UBERON:0000020!2.19e-13!23;UBERON:0002200!3.61e-13!11;UBERON:0006876!3.61e-13!11;UBERON:0001032!8.25e-13!24;UBERON:0004456!8.25e-13!24;UBERON:0005085!1.60e-10!29;UBERON:0002506!1.65e-10!1;UBERON:0001769!1.65e-10!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0002506;1.23e-66;1!UBERON:0001769;1.23e-66;1!UBERON:0000488;2.40e-66;4!UBERON:0002203;9.76e-45;6!UBERON:0001768;9.76e-45;6!UBERON:0002200;9.76e-45;6!UBERON:0007625;4.86e-25;11!UBERON:0006876;4.86e-25;11!UBERON:0001778;3.27e-23;3!UBERON:0001775;3.27e-23;3!UBERON:0001801;5.89e-20;14!UBERON:0000019;4.91e-15;19!UBERON:0000047;4.91e-15;19!UBERON:0004088;4.91e-15;19!UBERON:0010230;4.91e-15;19!UBERON:0000970;2.41e-14;20!UBERON:0002104;1.02e-13;21!UBERON:0001456;1.02e-13;21!UBERON:0000020;1.25e-12;23!UBERON:0001032;3.75e-12;24!UBERON:0004456;3.75e-12;24!UBERON:0000473;1.47e-09;8!UBERON:0010371;2.68e-09;31!UBERON:0003135;2.63e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002506,1.23e-66,1;UBERON:0001769,1.23e-66,1;UBERON:0000488,2.40e-66,4;UBERON:0002203,9.76e-45,6;UBERON:0001768,9.76e-45,6;UBERON:0002200,9.76e-45,6;UBERON:0007625,4.86e-25,11;UBERON:0006876,4.86e-25,11;UBERON:0001778,3.27e-23,3;UBERON:0001775,3.27e-23,3;UBERON:0001801,5.89e-20,14;UBERON:0000019,2.41e-14,20;UBERON:0000047,2.41e-14,20;UBERON:0010312,2.41e-14,20;UBERON:0004088,2.41e-14,20;UBERON:0010230,2.41e-14,20;UBERON:0003072,2.41e-14,20;UBERON:0004128,2.41e-14,20;UBERON:0003071,2.41e-14,20;UBERON:0000970,1.02e-13,21;UBERON:0002104,1.02e-13,21;UBERON:0001456,3.77e-13,22;UBERON:0000020,3.75e-12,24;UBERON:0001032,3.75e-12,24;UBERON:0004456,3.75e-12,24;UBERON:0005085,1.15e-09,31;UBERON:0000473,1.47e-09,8;UBERON:0003135,2.63e-07,11 | |||
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|short_description=p@chr5:78112479..78112482,+ | |short_description=p@chr5:78112479..78112482,+ | ||
}} | }} |
Latest revision as of 16:37, 30 July 2015
Short description: | p@chr5:78112479..78112482, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:78112479..78112482, + |
Coexpression cluster: | C1408_Iris_Ciliary_Lens_Retinal_Astrocyte_Smooth_testicular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell (sensu Vertebrata) | 1.23e-66 | 1 |
iris pigment epithelial cell | 1.23e-66 | 1 |
ciliated cell | 3.27e-23 | 3 |
ciliated epithelial cell | 3.27e-23 | 3 |
multi-ciliated epithelial cell | 3.27e-23 | 3 |
non-pigmented ciliary epithelial cell | 3.27e-23 | 3 |
germ line cell | 9.89e-11 | 7 |
germ cell | 9.89e-11 | 7 |
Ontology term | p-value | n |
---|---|---|
iris epithelium | 1.23e-66 | 1 |
iris | 1.23e-66 | 1 |
atypical epithelium | 2.40e-66 | 4 |
vasculature of eye | 9.76e-45 | 6 |
uvea | 9.76e-45 | 6 |
vasculature of head | 9.76e-45 | 6 |
pigment epithelium of eye | 4.86e-25 | 11 |
vasculature of organ | 4.86e-25 | 11 |
ciliary epithelium | 3.27e-23 | 3 |
ciliary body | 3.27e-23 | 3 |
anterior segment of eyeball | 5.89e-20 | 14 |
camera-type eye | 2.41e-14 | 20 |
simple eye | 2.41e-14 | 20 |
immature eye | 2.41e-14 | 20 |
ocular region | 2.41e-14 | 20 |
eyeball of camera-type eye | 2.41e-14 | 20 |
optic cup | 2.41e-14 | 20 |
optic vesicle | 2.41e-14 | 20 |
eye primordium | 2.41e-14 | 20 |
eye | 1.02e-13 | 21 |
visual system | 1.02e-13 | 21 |
face | 3.77e-13 | 22 |
sense organ | 3.75e-12 | 24 |
sensory system | 3.75e-12 | 24 |
entire sense organ system | 3.75e-12 | 24 |
ectodermal placode | 1.15e-09 | 31 |
testis | 1.47e-09 | 8 |
male reproductive organ | 2.63e-07 | 11 |