FFCP PHASE1:Hg19::chr6:75912479..75912515,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:75912479..75912515,+
|short_description=p@chr6:75912479..75912515,+
|description=CAGE_peak_at_chr6:75912479..75912515,+
|association_with_transcript=NA
|E...") |
No edit summary |
||
(12 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr6:75912479..75912515,+ | |||
|coexpression_cluster_id=C1280 | |||
|description=CAGE_peak_at_chr6:75912479..75912515,+ | |||
|id=chr6:75912479..75912515,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.10e-17!180;CL:0000057!3.12e-17!75;CL:0002620!3.03e-12!23;CL:0002334!7.80e-08!12 | |||
|ontology_enrichment_celltype_v019=CL:0002334;6.95e-20;12!CL:0002580;1.64e-16;3!CL:0002615;2.95e-16;3!CL:0002579;1.24e-15;3!CL:0000153;1.84e-13;9!CL:0000447;1.84e-13;9!CL:0000138;2.15e-13;6!CL:0002620;2.84e-12;23!CL:0000327;3.54e-11;15!CL:0000136;1.17e-09;13!CL:0000057;4.08e-08;73!CL:0000197;7.15e-08;6!CL:0000098;7.15e-08;6!CL:0002167;7.15e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,7.95e-20,12;CL:0000057,8.71e-17,76;CL:0002580,1.45e-16,3;CL:0002615,4.02e-16,3;CL:0002579,2.00e-15,3;CL:0000153,1.29e-13,9;CL:0000447,1.29e-13,9;CL:0000058,1.96e-13,6;CL:0000138,1.96e-13,6;CL:0002620,2.55e-12,23;CL:0000327,3.17e-11,15;CL:0000136,2.35e-08,15;CL:0000197,9.42e-08,6;CL:0000098,9.42e-08,6;CL:0002167,9.42e-08,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1192;1.18e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:1192,9.66e-08,3 | |||
|ontology_enrichment_uberon=UBERON:0002097!3.36e-10!40;UBERON:0003102!3.38e-10!95;UBERON:0002199!3.18e-09!45;UBERON:0002416!3.18e-09!45;UBERON:0003688!3.37e-09!6;UBERON:0002358!3.37e-09!6;UBERON:0003684!3.37e-09!6;UBERON:0001178!3.37e-09!6;UBERON:0004923!7.47e-08!57;UBERON:0004457!7.07e-07!12;UBERON:0000042!7.07e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;4.20e-30;6!UBERON:0002358;4.20e-30;6!UBERON:0003684;4.20e-30;6!UBERON:0001178;4.20e-30;6!UBERON:0004457;1.27e-26;9!UBERON:0000042;1.27e-26;9!UBERON:0001443;1.41e-11;11!UBERON:0005406;1.64e-10;2!UBERON:0000310;1.32e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,9.19e-30,6;UBERON:0002358,9.19e-30,6;UBERON:0003684,9.19e-30,6;UBERON:0001178,9.19e-30,6;UBERON:0004457,1.12e-19,12;UBERON:0000042,1.12e-19,12;UBERON:0001443,1.15e-11,11;UBERON:0005406,9.09e-11,2;UBERON:0000310,1.25e-08,10 | |||
|phase1_expression=3.99692434395225,0.642301571672949,2.39622486963151,2.00146596706261,6.25745532198203,1.74467704820074,0,0,0.261185628199839,0,0,0,0,0.247532705920093,0.662794751455832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,0.12786256184353,2.53007406669196,1.50401373190767,2.17269778441236,0,1.45990461090791,0.189069634328136,0,0.175669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.96971951695318,0.25326102332916,0.132409180813219,0.286836620748814,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0.23486899728753,0.161872944368132,0.280901613404497,0.408308342509787,0.122834317311768,0.206651562351531,1.18800285728205,0.741800787835671,0,0,0,0,0,0,1.5324389789951,0.751190294532984,0.226864366320042,1.25572744982203,1.70845911054854,0.847727604638247,0.600182192168805,0.206105058476878,2.83404594050192,1.11670113798954,1.68776332241266,0.584622030967192,1.00973509697646,1.38074847963449,0.646584227275248,2.84007674013291,0,0.169560592310488,0,0,0.286804595389004,0,0,0,0,0,0,0,0.643240938192885,0,0.928735856063958,0.721879481669586,0.236613600079688,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0.109750285408626,0,0.201057944823262,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517086863031111,0,0,0.531876233169741,2.08014873822732,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,1.03985430765404,0.535286966391485,1.41932173530541,2.10854546986884,0.300946099727719,0,0,0.664225598535437,0.368738337083406,0,0,0.343143423810856,0,0,0,0.303127571446259,0,0,2.72918588600655,11.2027240500286,5.3325417942284,1.02511319404561,2.55853624533352,2.2519548960105,1.48418066444991,0,0,0.0821271560138091,0,0.116210378459959,0,0,0,0.114814448164607,0.364182336013434,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0.640986253728404,0.660075999364704,0,0,0,0,0,0.15350367472613,0.137836572484531,0,0.580066775656914,0.170453254832202,0.0890320356467374,0,0,0.127612712494584,0,0,0.62962469366128,0,0,0.532306030317022,0,0.18532421910392,0,0.372158369359667,0.632758849437452,0.953150969619124,0,0.855877976067841,0,0,0,0.823611089208164,0.353437207037059,0,0,0.421258456238981,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0,0,0.30982349809975,0,0.143411352204052,0.491245205065606,0,0,1.89996871767898,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222617410045812,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,1.13942055847001,0,0,0,0,0.641183153813036,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,1.60515529459758,0,0,0,0,0.394584402849391,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0967563312890851,0,0,0.193978032976839,0,0.451961481561065,0,0.19871461170299,0.0633107959558787,0,0.160317640503067,0,0,0,0,0,0,0,0,0,0,0.305994652908965,0,0,0,0,0.429765441419957,0,0,0.229160424011684,0,0,0,0,0,1.08089965062721,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0.335434687599266,0.0788057072991982,0.104909176269996,0,0,0,0,0,3.30549098951175,0,0,0,0,0,0,0.226624183040251,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0.447764408660622,0.701139929541673,0,0,0.754703705257725,0,0,0,0.15543720058278,0,0,0,0.155262956876259,0.414706207840855,0.53168342911599,0,0.450772826991655,0,0.406870733204662,0.363697318405119,0.107410557042488,0,0.796191777397232,0,0.686791410365586,0.673498977531838,0,0.192619830407303,0.428883182749851,0,0.226705925512272,0,0,0.537266523244462,0,0.438568099157414,0,0,0.506827321959218,0,0,0,0,0,0,0,0,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59002175326709,0,0,0.705351887381368,2.7562092961788,0,0,0,0,0.252071696221718,0,0,0,0.196295437002051,0,0.183428598521679,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4582137370881,0,0,0.111855431797792,0,0,0,0,1.1598144313382,0,0,0,0,0,0,0,0,0.218559560503957,0,0.245148321753905,0,0,0,0,1.18948980281472,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0.924351257262837,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0.476128862927481,0,0,0,0,0.606351566874658,0,0,0.0673520530145875,0,0,0.162806537221949,0,0,0,0,0.244482888365733,0,0,0,0 | |phase1_expression=3.99692434395225,0.642301571672949,2.39622486963151,2.00146596706261,6.25745532198203,1.74467704820074,0,0,0.261185628199839,0,0,0,0,0.247532705920093,0.662794751455832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,0.12786256184353,2.53007406669196,1.50401373190767,2.17269778441236,0,1.45990461090791,0.189069634328136,0,0.175669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.96971951695318,0.25326102332916,0.132409180813219,0.286836620748814,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0.23486899728753,0.161872944368132,0.280901613404497,0.408308342509787,0.122834317311768,0.206651562351531,1.18800285728205,0.741800787835671,0,0,0,0,0,0,1.5324389789951,0.751190294532984,0.226864366320042,1.25572744982203,1.70845911054854,0.847727604638247,0.600182192168805,0.206105058476878,2.83404594050192,1.11670113798954,1.68776332241266,0.584622030967192,1.00973509697646,1.38074847963449,0.646584227275248,2.84007674013291,0,0.169560592310488,0,0,0.286804595389004,0,0,0,0,0,0,0,0.643240938192885,0,0.928735856063958,0.721879481669586,0.236613600079688,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0.109750285408626,0,0.201057944823262,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517086863031111,0,0,0.531876233169741,2.08014873822732,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,1.03985430765404,0.535286966391485,1.41932173530541,2.10854546986884,0.300946099727719,0,0,0.664225598535437,0.368738337083406,0,0,0.343143423810856,0,0,0,0.303127571446259,0,0,2.72918588600655,11.2027240500286,5.3325417942284,1.02511319404561,2.55853624533352,2.2519548960105,1.48418066444991,0,0,0.0821271560138091,0,0.116210378459959,0,0,0,0.114814448164607,0.364182336013434,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0.640986253728404,0.660075999364704,0,0,0,0,0,0.15350367472613,0.137836572484531,0,0.580066775656914,0.170453254832202,0.0890320356467374,0,0,0.127612712494584,0,0,0.62962469366128,0,0,0.532306030317022,0,0.18532421910392,0,0.372158369359667,0.632758849437452,0.953150969619124,0,0.855877976067841,0,0,0,0.823611089208164,0.353437207037059,0,0,0.421258456238981,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0,0,0.30982349809975,0,0.143411352204052,0.491245205065606,0,0,1.89996871767898,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222617410045812,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,1.13942055847001,0,0,0,0,0.641183153813036,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,1.60515529459758,0,0,0,0,0.394584402849391,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0967563312890851,0,0,0.193978032976839,0,0.451961481561065,0,0.19871461170299,0.0633107959558787,0,0.160317640503067,0,0,0,0,0,0,0,0,0,0,0.305994652908965,0,0,0,0,0.429765441419957,0,0,0.229160424011684,0,0,0,0,0,1.08089965062721,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0.335434687599266,0.0788057072991982,0.104909176269996,0,0,0,0,0,3.30549098951175,0,0,0,0,0,0,0.226624183040251,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0.447764408660622,0.701139929541673,0,0,0.754703705257725,0,0,0,0.15543720058278,0,0,0,0.155262956876259,0.414706207840855,0.53168342911599,0,0.450772826991655,0,0.406870733204662,0.363697318405119,0.107410557042488,0,0.796191777397232,0,0.686791410365586,0.673498977531838,0,0.192619830407303,0.428883182749851,0,0.226705925512272,0,0,0.537266523244462,0,0.438568099157414,0,0,0.506827321959218,0,0,0,0,0,0,0,0,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59002175326709,0,0,0.705351887381368,2.7562092961788,0,0,0,0,0.252071696221718,0,0,0,0.196295437002051,0,0.183428598521679,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4582137370881,0,0,0.111855431797792,0,0,0,0,1.1598144313382,0,0,0,0,0,0,0,0,0.218559560503957,0,0.245148321753905,0,0,0,0,1.18948980281472,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0.924351257262837,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0.476128862927481,0,0,0,0,0.606351566874658,0,0,0.0673520530145875,0,0,0.162806537221949,0,0,0,0,0.244482888365733,0,0,0,0 | ||
|short_description=p@chr6:75912479..75912515,+ | |||
}} | }} |
Latest revision as of 03:15, 31 July 2015
Short description: | p@chr6:75912479..75912515, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:75912479..75912515, + |
Coexpression cluster: | C1280_Preadipocyte_Fibroblast_Adipocyte_leiomyoblastoma_Ewing_Chondrocyte_spindle |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 7.95e-20 | 12 |
fibroblast | 8.71e-17 | 76 |
preadipocyte of the breast | 1.45e-16 | 3 |
adipocyte of omentum tissue | 4.02e-16 | 3 |
omentum preadipocyte | 2.00e-15 | 3 |
GAG secreting cell | 1.29e-13 | 9 |
carbohydrate secreting cell | 1.29e-13 | 9 |
chondroblast | 1.96e-13 | 6 |
chondrocyte | 1.96e-13 | 6 |
skin fibroblast | 2.55e-12 | 23 |
extracellular matrix secreting cell | 3.17e-11 | 15 |
fat cell | 2.35e-08 | 15 |
receptor cell | 9.42e-08 | 6 |
sensory epithelial cell | 9.42e-08 | 6 |
olfactory epithelial cell | 9.42e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
omentum | 9.19e-30 | 6 |
peritoneum | 9.19e-30 | 6 |
abdominal cavity | 9.19e-30 | 6 |
visceral peritoneum | 9.19e-30 | 6 |
cavity lining | 1.12e-19 | 12 |
serous membrane | 1.12e-19 | 12 |
chest | 1.15e-11 | 11 |
perirenal fat | 9.09e-11 | 2 |
breast | 1.25e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
peripheral nervous system neoplasm | 9.66e-08 | 3 |