FFCP PHASE1:Mm9::chr1:173275762..173275784,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=27045|HGNC=|UniProt=D3YY54,Q8VDK1,D3Z2Y2|association_with_transcript=0bp_to_ENSMUST00000111289,ENSMUST00000111295,ENSMUST00000141357,ENSMUST00000148339,NM_001242580,NM_012049,uc007doa.2,uc007dob.2_5end|description=CAGE_peak_1_at_Nit1_5end|id=chr1:173275762..173275784,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!2.07e-11!51;UBERON:0005172!1.19e-10!49;UBERON:0005173!1.19e-10!49;UBERON:0002417!1.19e-10!49;UBERON:0000916!1.19e-10!49;UBERON:0002365!1.36e-10!25;UBERON:0002330!1.36e-10!25;UBERON:0009854!3.02e-10!23;UBERON:0009856!3.02e-10!23;UBERON:0002107!1.27e-09!22;UBERON:0007499!1.27e-09!22;UBERON:0006925!1.27e-09!22;UBERON:0009497!1.27e-09!22;UBERON:0000015!1.27e-09!22;UBERON:0002423!1.27e-09!22;UBERON:0006235!1.27e-09!22;UBERON:0008835!1.27e-09!22;UBERON:0003894!1.27e-09!22;UBERON:0004161!1.27e-09!22;UBERON:0008836!1.27e-09!22;UBERON:0000481!3.74e-09!230;UBERON:0009569!7.09e-09!66;UBERON:0005177!1.71e-07!85;UBERON:0005256!2.58e-07!47;UBERON:0004119!5.81e-07!130;UBERON:0000925!5.81e-07!130;UBERON:0006595!5.81e-07!130;UBERON:0000468!6.45e-07!333;UBERON:0004921!8.83e-07!126;UBERON:0004185!8.83e-07!126|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.07e-11,51;UBERON:0005172,1.19e-10,49;UBERON:0005173,1.19e-10,49;UBERON:0002417,1.19e-10,49;UBERON:0000916,1.19e-10,49;UBERON:0002365,1.36e-10,25;UBERON:0002330,1.36e-10,25;UBERON:0009854,3.02e-10,23;UBERON:0009856,3.02e-10,23;UBERON:0002107,1.27e-09,22;UBERON:0007499,1.27e-09,22;UBERON:0006925,1.27e-09,22;UBERON:0009497,1.27e-09,22;UBERON:0000015,1.27e-09,22;UBERON:0002423,1.27e-09,22;UBERON:0006235,1.27e-09,22;UBERON:0008835,1.27e-09,22;UBERON:0003894,1.27e-09,22;UBERON:0004161,1.27e-09,22;UBERON:0008836,1.27e-09,22;UBERON:0005177,2.71e-09,79;UBERON:0009569,7.09e-09,66;UBERON:0005256,2.60e-08,45;UBERON:0002100,1.64e-07,90;UBERON:0003104,2.73e-07,61;UBERON:0009142,2.73e-07,61|phase1_expression=15.8547358633746,12.9120900826564,15.0149748998547,22.0798874253986,25.5456822272637,7.55456723603504,13.5495331545405,15.1074288426644,6.89864738543167,3.04283884218592,14.7247452673934,6.06268408364557,25.6801094896809,13.1130603628496,16.9885978525988,15.1856450542369,13.9912375625629,18.4545366734569,21.8011949433125,14.004858509335,32.4865368377087,24.3262830442169,17.2391860831697,25.2788028013583,23.3997466688513,14.3557991028755,19.8150518233174,19.6078821744159,36.8645433745365,15.8778981748756,16.6297882991479,10.1604907753541,11.0711661765223,0,37.2618589479144,40.2287841767551,30.8295727956177,42.6902263351646,27.346737058333,30.3643771504803,48.2349820185432,29.3709558532132,33.9857247121808,16.1147927008739,14.6996550268296,15.2343804294196,19.559783608701,15.9158364157726,20.4308149943059,23.9148775861369,22.1178546168073,35.9381410912429,15.7715649694272,11.6057942721815,14.7881271622684,12.6057123657614,17.1920063963254,14.4388185837684,18.4107979382234,22.7466121086974,18.3811107016792,13.2149367506962,25.789549087223,15.2982951937838,21.7550599764734,18.4724829885986,17.6764065205859,11.9107674649682,18.2493717662921,17.4157660447881,14.5124223332454,19.9955689082663,20.0990372265968,20.0884910712525,17.2521847832825,21.1420320920305,15.4162233399144,18.6423513604374,19.6616362567992,15.9582408153535,18.6634792948916,16.6692278578163,24.5681039121215,14.069065250792,16.6550090076723,16.2045722010517,17.0846016958924,16.0303523409758,9.31432177998164,11.638020256445,16.5222758559956,88.6236593290828,57.117592031451,98.7656840697205,151.397905265307,150.985060951802,33.9875496718839,13.1231348385104,6.75443611967459,10.2468476607999,20.281452447842,5.13305909657271,10.1922095882658,0,38.9683873820185,43.8312567271921,34.88118670602,45.3310002484668,22.2686579936568,55.6658021493093,26.3697696684527,58.152906357619,41.7414050033466,52.9036468339705,40.215337840411,46.3709722006503,115.440049931953,52.344967205008,15.9229899350977,15.6913844448987,14.575540218386,24.7286379098963,108.107221506511,36.8903804234549,26.8091784721222,72.8052607344485,14.1381846916986,17.9970819298022,16.3920592924253,39.8443100816828,33.3975440057597,19.7277332817197,49.3661069346065,37.0787413128979,43.4277013129481,33.4217001919581,18.1274067653563,32.5946262998444,98.3091530306995,63.7638823336016,30.7084245391981,25.5191335921155,29.5301892880773,28.3325057531144,21.7716797284249,25.62274405697,22.0199052715363,43.7208696548936,27.8082710883366,24.2055782614809,26.2167175004284,26.5226836237366,27.5266776733342,26.8154168222068,30.6615383247836,26.8696260204966,21.7686088067103,15.1835265197682,16.76564646434,33.1401236056803,32.1300702174102,26.2890609733082,33.3810077175146,29.5146347621106,31.3162239161378,32.0896843755563,27.0956135413615,24.2871912123713,22.2155797383199,20.1925980817287,23.9152988160274,27.7779976108131,35.5671186771502,27.2439030083555,41.6374098156972,22.6390147234426,139.767145202147,41.2542883995129,31.7799493297499,25.3137972327878,30.9281907173024,47.1939447618621,69.1595716357547,77.9925067061493,52.1981967698963,97.5017811966144,62.5824669912671,67.4462440219501,62.3885078781184,62.0185391971413,65.4898291120324,68.7037392727567,30.9158678553523,30.2758558415781,25.9227792048085,36.8608903400019,38.4025924591899,31.1403040313014,41.2302222050157,70.852871030209,88.7042812303768,94.1520360723338,105.240682615938,26.0278364917107,31.8425572083389,33.7293168577281,43.0063457343626,50.1648492285027,52.4529254669725,88.0350180599481,90.1471860869197,93.6254418971358,51.7565543498476,101.222337765833,112.333562321242,118.459493757195,151.94960925306,110.479566392211,35.1031061316549,24.8233749419335,20.8595169845793,22.4063513223248,27.4587590497547,29.8161138246432,35.7065461329021,23.0257704472203,29.6354070919639,26.1328333785554,20.2507556195009,28.6760800752541,25.9027472798843,29.2191098334653,22.6186925908908,24.4757557718419,43.7670202986942,37.8033342437484,37.7293886471311,34.2258124849233,9.50822683184717,32.0638077549554,10.7272794601527,16.0079885161622,11.4174400798383,8.12493913038677,13.3679204449436,8.77537245445381,6.47697122679831,9.64444331107329,9.88219444866309,33.4174169078679,42.5820255624806,26.3537093427538,19.8722090411363,36.4583971769303,42.4784442687881,31.0759214278376,31.1393263673694,32.0628635585027,32.483208216885,34.4327365697199,30.7529668870183,25.4473610634254,23.5288269733916,24.3348303610578,33.7339547439996,29.9093075419742,46.2997863825152,29.7100805151662,40.2305506564366,36.0086218853075,37.9508099994465,29.7875925395458,31.7579609762093,35.3179340972935,39.8941903708308,44.4847348814022,85.5650184453252,28.855094264759,24.5425928577776,21.3507754245672,27.4556391207214,28.3963756558956,52.1750697567433,32.0785772478182,23.0675689077101,23.9408766837338,25.1864557222808,23.169320211577,25.8352090392738,21.0475919350001,10.1987057996313,16.5142713741916,12.9907975376158,90.6937087114358,30.8427593741607,26.4315307264903,30.457506111748,30.317802922098,48.6948517153976,44.2355056142212,38.3512034565559,45.2837779632371,51.8459893167171,54.0565202385625,223.786096657624,28.5576602943999,26.6388169635927,30.1399341933274,27.2527227538013,28.3846290824507,24.7623773542541,20.7024971901881,22.4398997071021,76.5821663018439,105.418982290379,33.1811676659587,29.8006066476541,30.915998106613,30.2715517538262,27.9281645241271,25.6298947667832,19.5918582717549,23.4826348207578,25.8474111867258,27.4344503957999,24.1982844328417,30.7966903137618,25.688561717968,32.6086557086577,42.3985817360445,19.7567498502918,13.0982230649835,16.9563462527719,53.3203279528846,40.9147796483577,34.2493537379786,49.0903588091061,63.6996572124911,40.0973808258117,41.8895965221531,36.6653128601214,44.6818274093588,32.1988784292202,37.769694869485,38.4762825132129,52.2372595740096,48.4862377613099,55.4003533574447,24.2862393346973,17.5570944296454,27.6588441321697,28.929699331127,32.4900402073373,36.7687016900028,39.1154240930843,37.2923453602398,39.1521435702015,31.8398486822385,35.994060584414,34.3299941322659,30.7144144501214,29.6436455634545,28.0285088503393,28.5776214769844,22.481559233302,22.9561972351809,30.906442560248,33.2669559503738,36.6870100052395,30.8807902717247,27.4201618439419,35.4645256582882,33.1265019061964,29.1920397226284,30.7318994426258,32.3575745068547,31.5065544122399,42.6468126459881,27.7605942410567,26.8917236885288,27.0092488491995,28.6633156194037,37.2309759193603,29.7274587746156,37.6629889597108,34.594239701776,24.6761948368808,26.4709702943419,23.650519233283|short_description=p1@Nit1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:27045 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:D3YY54,uniprot:Q8VDK1,uniprot:D3Z2Y2 | |||
|association_with_transcript=0bp_to_ENSMUST00000111289,ENSMUST00000111295,ENSMUST00000141357,ENSMUST00000148339,NM_001242580,NM_012049,uc007doa.2,uc007dob.2_5end | |||
|cluster_id=chr1:173275762..173275784,- | |||
|description=CAGE_peak_1_at_Nit1_5end | |||
|id=chr1:173275762..173275784,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.07e-11!51;UBERON:0005172!1.19e-10!49;UBERON:0005173!1.19e-10!49;UBERON:0002417!1.19e-10!49;UBERON:0000916!1.19e-10!49;UBERON:0002365!1.36e-10!25;UBERON:0002330!1.36e-10!25;UBERON:0009854!3.02e-10!23;UBERON:0009856!3.02e-10!23;UBERON:0002107!1.27e-09!22;UBERON:0007499!1.27e-09!22;UBERON:0006925!1.27e-09!22;UBERON:0009497!1.27e-09!22;UBERON:0000015!1.27e-09!22;UBERON:0002423!1.27e-09!22;UBERON:0006235!1.27e-09!22;UBERON:0008835!1.27e-09!22;UBERON:0003894!1.27e-09!22;UBERON:0004161!1.27e-09!22;UBERON:0008836!1.27e-09!22;UBERON:0000481!3.74e-09!230;UBERON:0009569!7.09e-09!66;UBERON:0005177!1.71e-07!85;UBERON:0005256!2.58e-07!47;UBERON:0004119!5.81e-07!130;UBERON:0000925!5.81e-07!130;UBERON:0006595!5.81e-07!130;UBERON:0000468!6.45e-07!333;UBERON:0004921!8.83e-07!126;UBERON:0004185!8.83e-07!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.07e-11,51;UBERON:0005172,1.19e-10,49;UBERON:0005173,1.19e-10,49;UBERON:0002417,1.19e-10,49;UBERON:0000916,1.19e-10,49;UBERON:0002365,1.36e-10,25;UBERON:0002330,1.36e-10,25;UBERON:0009854,3.02e-10,23;UBERON:0009856,3.02e-10,23;UBERON:0002107,1.27e-09,22;UBERON:0007499,1.27e-09,22;UBERON:0006925,1.27e-09,22;UBERON:0009497,1.27e-09,22;UBERON:0000015,1.27e-09,22;UBERON:0002423,1.27e-09,22;UBERON:0006235,1.27e-09,22;UBERON:0008835,1.27e-09,22;UBERON:0003894,1.27e-09,22;UBERON:0004161,1.27e-09,22;UBERON:0008836,1.27e-09,22;UBERON:0005177,2.71e-09,79;UBERON:0009569,7.09e-09,66;UBERON:0005256,2.60e-08,45;UBERON:0002100,1.64e-07,90;UBERON:0003104,2.73e-07,61;UBERON:0009142,2.73e-07,61 | |||
|phase1_expression=15.8547358633746,12.9120900826564,15.0149748998547,22.0798874253986,25.5456822272637,7.55456723603504,13.5495331545405,15.1074288426644,6.89864738543167,3.04283884218592,14.7247452673934,6.06268408364557,25.6801094896809,13.1130603628496,16.9885978525988,15.1856450542369,13.9912375625629,18.4545366734569,21.8011949433125,14.004858509335,32.4865368377087,24.3262830442169,17.2391860831697,25.2788028013583,23.3997466688513,14.3557991028755,19.8150518233174,19.6078821744159,36.8645433745365,15.8778981748756,16.6297882991479,10.1604907753541,11.0711661765223,0,37.2618589479144,40.2287841767551,30.8295727956177,42.6902263351646,27.346737058333,30.3643771504803,48.2349820185432,29.3709558532132,33.9857247121808,16.1147927008739,14.6996550268296,15.2343804294196,19.559783608701,15.9158364157726,20.4308149943059,23.9148775861369,22.1178546168073,35.9381410912429,15.7715649694272,11.6057942721815,14.7881271622684,12.6057123657614,17.1920063963254,14.4388185837684,18.4107979382234,22.7466121086974,18.3811107016792,13.2149367506962,25.789549087223,15.2982951937838,21.7550599764734,18.4724829885986,17.6764065205859,11.9107674649682,18.2493717662921,17.4157660447881,14.5124223332454,19.9955689082663,20.0990372265968,20.0884910712525,17.2521847832825,21.1420320920305,15.4162233399144,18.6423513604374,19.6616362567992,15.9582408153535,18.6634792948916,16.6692278578163,24.5681039121215,14.069065250792,16.6550090076723,16.2045722010517,17.0846016958924,16.0303523409758,9.31432177998164,11.638020256445,16.5222758559956,88.6236593290828,57.117592031451,98.7656840697205,151.397905265307,150.985060951802,33.9875496718839,13.1231348385104,6.75443611967459,10.2468476607999,20.281452447842,5.13305909657271,10.1922095882658,0,38.9683873820185,43.8312567271921,34.88118670602,45.3310002484668,22.2686579936568,55.6658021493093,26.3697696684527,58.152906357619,41.7414050033466,52.9036468339705,40.215337840411,46.3709722006503,115.440049931953,52.344967205008,15.9229899350977,15.6913844448987,14.575540218386,24.7286379098963,108.107221506511,36.8903804234549,26.8091784721222,72.8052607344485,14.1381846916986,17.9970819298022,16.3920592924253,39.8443100816828,33.3975440057597,19.7277332817197,49.3661069346065,37.0787413128979,43.4277013129481,33.4217001919581,18.1274067653563,32.5946262998444,98.3091530306995,63.7638823336016,30.7084245391981,25.5191335921155,29.5301892880773,28.3325057531144,21.7716797284249,25.62274405697,22.0199052715363,43.7208696548936,27.8082710883366,24.2055782614809,26.2167175004284,26.5226836237366,27.5266776733342,26.8154168222068,30.6615383247836,26.8696260204966,21.7686088067103,15.1835265197682,16.76564646434,33.1401236056803,32.1300702174102,26.2890609733082,33.3810077175146,29.5146347621106,31.3162239161378,32.0896843755563,27.0956135413615,24.2871912123713,22.2155797383199,20.1925980817287,23.9152988160274,27.7779976108131,35.5671186771502,27.2439030083555,41.6374098156972,22.6390147234426,139.767145202147,41.2542883995129,31.7799493297499,25.3137972327878,30.9281907173024,47.1939447618621,69.1595716357547,77.9925067061493,52.1981967698963,97.5017811966144,62.5824669912671,67.4462440219501,62.3885078781184,62.0185391971413,65.4898291120324,68.7037392727567,30.9158678553523,30.2758558415781,25.9227792048085,36.8608903400019,38.4025924591899,31.1403040313014,41.2302222050157,70.852871030209,88.7042812303768,94.1520360723338,105.240682615938,26.0278364917107,31.8425572083389,33.7293168577281,43.0063457343626,50.1648492285027,52.4529254669725,88.0350180599481,90.1471860869197,93.6254418971358,51.7565543498476,101.222337765833,112.333562321242,118.459493757195,151.94960925306,110.479566392211,35.1031061316549,24.8233749419335,20.8595169845793,22.4063513223248,27.4587590497547,29.8161138246432,35.7065461329021,23.0257704472203,29.6354070919639,26.1328333785554,20.2507556195009,28.6760800752541,25.9027472798843,29.2191098334653,22.6186925908908,24.4757557718419,43.7670202986942,37.8033342437484,37.7293886471311,34.2258124849233,9.50822683184717,32.0638077549554,10.7272794601527,16.0079885161622,11.4174400798383,8.12493913038677,13.3679204449436,8.77537245445381,6.47697122679831,9.64444331107329,9.88219444866309,33.4174169078679,42.5820255624806,26.3537093427538,19.8722090411363,36.4583971769303,42.4784442687881,31.0759214278376,31.1393263673694,32.0628635585027,32.483208216885,34.4327365697199,30.7529668870183,25.4473610634254,23.5288269733916,24.3348303610578,33.7339547439996,29.9093075419742,46.2997863825152,29.7100805151662,40.2305506564366,36.0086218853075,37.9508099994465,29.7875925395458,31.7579609762093,35.3179340972935,39.8941903708308,44.4847348814022,85.5650184453252,28.855094264759,24.5425928577776,21.3507754245672,27.4556391207214,28.3963756558956,52.1750697567433,32.0785772478182,23.0675689077101,23.9408766837338,25.1864557222808,23.169320211577,25.8352090392738,21.0475919350001,10.1987057996313,16.5142713741916,12.9907975376158,90.6937087114358,30.8427593741607,26.4315307264903,30.457506111748,30.317802922098,48.6948517153976,44.2355056142212,38.3512034565559,45.2837779632371,51.8459893167171,54.0565202385625,223.786096657624,28.5576602943999,26.6388169635927,30.1399341933274,27.2527227538013,28.3846290824507,24.7623773542541,20.7024971901881,22.4398997071021,76.5821663018439,105.418982290379,33.1811676659587,29.8006066476541,30.915998106613,30.2715517538262,27.9281645241271,25.6298947667832,19.5918582717549,23.4826348207578,25.8474111867258,27.4344503957999,24.1982844328417,30.7966903137618,25.688561717968,32.6086557086577,42.3985817360445,19.7567498502918,13.0982230649835,16.9563462527719,53.3203279528846,40.9147796483577,34.2493537379786,49.0903588091061,63.6996572124911,40.0973808258117,41.8895965221531,36.6653128601214,44.6818274093588,32.1988784292202,37.769694869485,38.4762825132129,52.2372595740096,48.4862377613099,55.4003533574447,24.2862393346973,17.5570944296454,27.6588441321697,28.929699331127,32.4900402073373,36.7687016900028,39.1154240930843,37.2923453602398,39.1521435702015,31.8398486822385,35.994060584414,34.3299941322659,30.7144144501214,29.6436455634545,28.0285088503393,28.5776214769844,22.481559233302,22.9561972351809,30.906442560248,33.2669559503738,36.6870100052395,30.8807902717247,27.4201618439419,35.4645256582882,33.1265019061964,29.1920397226284,30.7318994426258,32.3575745068547,31.5065544122399,42.6468126459881,27.7605942410567,26.8917236885288,27.0092488491995,28.6633156194037,37.2309759193603,29.7274587746156,37.6629889597108,34.594239701776,24.6761948368808,26.4709702943419,23.650519233283 | |||
|short_description=p1@Nit1 | |||
}} |
Revision as of 06:06, 5 August 2015
Short description: | p1@Nit1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nit1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000111289, ENSMUST00000111295, ENSMUST00000141357, ENSMUST00000148339, NM_001242580, NM_012049, uc007doa.2, uc007dob.2_5end |
EntrezGene: | 27045 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 2.07e-11 | 51 |
abdomen element | 1.19e-10 | 49 |
abdominal segment element | 1.19e-10 | 49 |
abdominal segment of trunk | 1.19e-10 | 49 |
abdomen | 1.19e-10 | 49 |
exocrine gland | 1.36e-10 | 25 |
exocrine system | 1.36e-10 | 25 |
digestive tract diverticulum | 3.02e-10 | 23 |
sac | 3.02e-10 | 23 |
liver | 1.27e-09 | 22 |
epithelial sac | 1.27e-09 | 22 |
digestive gland | 1.27e-09 | 22 |
epithelium of foregut-midgut junction | 1.27e-09 | 22 |
anatomical boundary | 1.27e-09 | 22 |
hepatobiliary system | 1.27e-09 | 22 |
foregut-midgut junction | 1.27e-09 | 22 |
hepatic diverticulum | 1.27e-09 | 22 |
liver primordium | 1.27e-09 | 22 |
septum transversum | 1.27e-09 | 22 |
liver bud | 1.27e-09 | 22 |
trunk region element | 2.71e-09 | 79 |
subdivision of trunk | 7.09e-09 | 66 |
trunk mesenchyme | 2.60e-08 | 45 |
trunk | 1.64e-07 | 90 |
mesenchyme | 2.73e-07 | 61 |
entire embryonic mesenchyme | 2.73e-07 | 61 |