FFCP PHASE1:Hg19::chr7:128001971..128001994,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:128001971..128001994,- to FFCP PHASE1:Hg19::chr7:128001971..128001994,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=401399 | |EntrezGene=401399 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=37280 | |HGNC=37280 | ||
|TSSclassifier=strong | |||
|UniProt=C9JH25,C9JWH6 | |UniProt=C9JH25,C9JWH6 | ||
|association_with_transcript=-232bp_to_ENST00000435512,ENST00000446477,ENST00000495931,ENST00000535159,NM_001114726,NM_001174164,uc010llh.2_5end | |||
|cluster_id=chr7:128001971..128001994,- | |||
|coexpression_cluster_id=C4650 | |||
|description=CAGE_peak_1_at_PRRT4_5end | |||
|id=chr7:128001971..128001994,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000136;6.61e-19;13!CL:0000333;2.02e-17;5!CL:0002521;1.56e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,3.97e-16,15;CL:0002521,2.04e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:171!2.58e-10!10 | |||
|ontology_enrichment_disease_v019=DOID:171;3.28e-33;10!DOID:169;1.53e-14;6!DOID:3095;2.06e-14;22!DOID:2994;2.06e-14;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,3.73e-33,10;DOID:169,1.29e-14,6;DOID:3095,2.18e-14,22;DOID:2994,2.18e-14,22 | |||
|ontology_enrichment_uberon=UBERON:0001049!3.49e-14!57;UBERON:0005068!3.49e-14!57;UBERON:0006241!3.49e-14!57;UBERON:0007135!3.49e-14!57;UBERON:0002346!1.02e-13!90;UBERON:0003080!2.48e-12!42;UBERON:0002616!2.81e-12!59;UBERON:0000955!3.54e-12!69;UBERON:0006238!3.54e-12!69;UBERON:0000073!5.19e-12!94;UBERON:0001016!5.19e-12!94;UBERON:0002780!1.60e-11!41;UBERON:0001890!1.60e-11!41;UBERON:0006240!1.60e-11!41;UBERON:0007023!5.11e-11!115;UBERON:0003075!5.29e-11!86;UBERON:0007284!5.29e-11!86;UBERON:0001017!5.80e-11!82;UBERON:0002020!9.06e-11!34;UBERON:0003528!9.06e-11!34;UBERON:0005743!9.77e-11!86;UBERON:0001893!2.49e-10!34;UBERON:0003056!4.91e-10!61;UBERON:0002791!1.05e-09!33;UBERON:0001869!1.77e-09!32;UBERON:0000924!1.82e-09!173;UBERON:0006601!1.82e-09!173;UBERON:0002619!1.15e-07!22;UBERON:0004121!1.16e-07!169;UBERON:0001950!1.97e-07!20;UBERON:0000153!2.16e-07!129;UBERON:0007811!2.16e-07!129;UBERON:0000956!3.88e-07!25;UBERON:0000203!3.88e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0002346;7.56e-22;4!UBERON:0000923;7.56e-22;4!UBERON:0010316;7.56e-22;4!UBERON:0005291;7.56e-22;4!UBERON:0002050;1.64e-17;5!UBERON:0005423;1.64e-17;5!UBERON:0000013;2.02e-17;5!UBERON:0002410;2.02e-17;5!UBERON:0000010;1.00e-09;8!UBERON:0002190;1.56e-07;3!UBERON:0005383;1.56e-07;3!UBERON:0005382;1.56e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,1.64e-17,5;UBERON:0002410,1.64e-17,5;UBERON:0000010,8.97e-10,8;UBERON:0005383,1.41e-07,3;UBERON:0005382,1.41e-07,3;UBERON:0002190,2.04e-07,3 | |||
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|phase1_expression=0,1.07050261945492,0.140954404095971,0,0.446961094427288,0,0,1.26343974685366,1.04474251279935,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0.767658796194425,0,0,0.30120591877825,0,0,0,0.587200878669695,0.553995408531877,0,0.217010870715852,0,0,0,0.145398238779565,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535081656179426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,1.09288586487763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.232387885739037,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,1.96565443335525,0,0,0.122988438543114,0,0,0,0.301586917234893,0.0925884451585296,0,0,0,0.34779121492523,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0.144119953416961,0,0.126995788584338,0.381988425558278,0,0,0.514137463516618,0.600686115687835,0,0,0,0,0,3.57656445851882,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0.179060963239896,0,0,0,0.256686072559497,0,0,0,0.837581326671744,0.637938751653163,0,0,0,0,0,0,0,0.178428988797162,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165018999841176,0,0,0,0,0,0,0,0,0,0.0852266274161009,0.267096106940212,0.165284915360978,0,0.382838137483752,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349934720244983,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01976898167023,0,0.797131363644112,2.19537308576098,0,0.423347165447766,2.921597462471,0.842391534340376,0.456469358066384,3.44695770700651,0,0,0.1605880751037,0,0.851692475380653,2.74804275804612,0,0.223676107892416,0.166849141711909,4.10315000344285,0,0,0,0,2.81974010175699,0,1.46508179271894,0,0,0,0,0,0,0,0.140669416410513,0,0,0.211125408127993,0.398495976502139,0.828851746593443,0,0,0,0,0,0,0,0.0986434056369336,0,0,0.969332746095218,0,1.99613798001194,0.520855522170466,0,1.44999915086959,0.1137934482855,0.254253650292766,0.236387681767936,0.344743373241465,1.45802306691627,0.347249989866585,0,1.20596438625408,0,0.331737779793674,0.295547618953547,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.619202951523374,0,0,0,0,0.067401132980677,2.40773294189637,0.234264445725339,0,0.19566461893209,0,0,0,0.61214552326098,0,0.450970258243478,0.414752765588989,0.664653872707185,0,0,1.19472429772959,0,0,0,0.293977192243133,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0.126621591911757,0,0,0.213452994739353,0,0,0,0,0.288109595976299,0,0.707082103850386,0,0,0,0,0,0.136905378891993,0,0,0,0.558564802544508,0.916641696046735,0,0,0,0.223171457441873,0.201550417460179,0,0,0,0,0,0.0984274815147488,0,0,0.681017030557878,0,0,0,0,0,0.182248669974074,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.775697738169303,0.52893040697076,0,0.704815022316672,0,0.314408610199332,0,0,0,0,0,4.89616023032527,3.2589686222951,4.59518365145192,11.803414705553,0,0,0.488105059607853,0.3755727921195,0,0.332787154610557,0.18628920882415,0.138348634936231,0,0,0.570930667089935,0,0.936669811613763,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0.132864840313363,0,0,0,0,0,2.98736843143594,0,0,0,0.279759015438889,0,1.53473245564382,0,3.61711666268562,19.8761541509465,4.07358071889661,11.4790456854909,7.43614585554013,5.02780426175919,0,0.0788617450012534,0,0,0,0.385375350578757,0,0.478901577171454,0,1.51243017733031,0.207471757392654,0,0,0,0.235939446695481,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0.337687923091973,0,0.206686796501184,0.0634158101939068,0.546974809018219,0,0.992422356778588,1.05522746615772,0,0,0.672567444437648,0.606965604236632,0,0,0,0,0.271878931907327,0.131545547125698,0.118193840883968,0,0,1.72827148907602,0,0.913158720509496,0,0,0.714765441766563,0.316027223465453,0,3.99874026295933,0,0.207216164163037,0.3414369541879,0,0,0,0,0,0,0,0,0,0,0,0,0.205325613712494,2.3196288626764,0.485710993059139,0,3.38216317774326,0.118920090777569,0,0,0.150962843566674,0.0771741581079447,0.218559560503957,0,0,0.235676547101626,0.588925401344836,0,0,0,0,0.257831551894309,0,0,0,0,0,0,0.143339583151451,0,0.543931921527318,0.872701380680755,0,0,0,0,0,0,0.126698501011437,0.305966489225945,0,0.459474497674225,0,0,0,0,0.310298987585686,0.852935927603924,0.714193294391221,0.129177819672012,0.186224142887574,0,0,0,0,0,0.202056159043763,0,0,0.244209805832924,0,0,0,0,0.122241444182866,0,0.665756774185513,0.201273793591026,0 | ||
|short_description=p1@PRRT4 | |||
}} | }} |
Latest revision as of 03:20, 16 September 2015
Short description: | p1@PRRT4 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRRT4_5end |
Coexpression cluster: | C4650_neuroblastoma_neuroectodermal_mature_rhabdomyosarcoma_neuroepithelioma_small_acute |
Association with transcript: | -232bp_to_ENST00000435512, ENST00000446477, ENST00000495931, ENST00000535159, NM_001114726, NM_001174164, uc010llh.2_5end |
EntrezGene: | PRRT4 |
HGNC: | 37280 |
UniProt: | C9JH25C9JWH6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
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fat cell | 3.97e-16 | 15 |
subcutaneous fat cell | 2.04e-07 | 3 |
Ontology term | p-value | n |
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sympathetic nervous system | 1.64e-17 | 5 |
autonomic nervous system | 1.64e-17 | 5 |
peripheral nervous system | 8.97e-10 | 8 |
caudate-putamen | 1.41e-07 | 3 |
dorsal striatum | 1.41e-07 | 3 |
subcutaneous adipose tissue | 2.04e-07 | 3 |
Ontology term | p-value | n |
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neuroectodermal tumor | 3.73e-33 | 10 |
neuroendocrine tumor | 1.29e-14 | 6 |
germ cell and embryonal cancer | 2.18e-14 | 22 |
germ cell cancer | 2.18e-14 | 22 |