FFCP PHASE1:Hg19::chr17:61919985..61920012,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6603 | |EntrezGene=6603 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11107 | |HGNC=11107 | ||
|TSSclassifier=strong | |||
|UniProt=Q92925 | |UniProt=Q92925 | ||
|association_with_transcript=-56bp_to_ENST00000225742_5end | |association_with_transcript=-56bp_to_ENST00000225742_5end | ||
|cluster_id=chr17:61919985..61920012,- | |||
|description=CAGE_peak_3_at_SMARCD2_5end | |description=CAGE_peak_3_at_SMARCD2_5end | ||
|id=chr17:61919985..61920012,- | |id=chr17:61919985..61920012,- | ||
|ontology_enrichment_celltype=CL:0002321!6.68e-13!248;CL:0000220!1.34e-12!246;CL:0000055!4.80e-09!180;CL:0000066!2.96e-07!254;CL:0000223!3.19e-07!59;CL:0000548!7.45e-07!679;CL:0000004!7.45e-07!679;CL:0000255!7.45e-07!679;CL:0000012!8.35e-07!682;CL:0002076!9.14e-07!43 | |ontology_enrichment_celltype=CL:0002321!6.68e-13!248;CL:0000220!1.34e-12!246;CL:0000055!4.80e-09!180;CL:0000066!2.96e-07!254;CL:0000223!3.19e-07!59;CL:0000548!7.45e-07!679;CL:0000004!7.45e-07!679;CL:0000255!7.45e-07!679;CL:0000012!8.35e-07!682;CL:0002076!9.14e-07!43 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,8.37e-13,250;CL:0000223,5.95e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002100!1.45e-09!216;UBERON:0000475!1.82e-08!365;UBERON:0003104!5.19e-08!238;UBERON:0009142!5.19e-08!238;UBERON:0009569!7.80e-08!113;UBERON:0003102!1.70e-07!95;UBERON:0000466!4.94e-07!126 | |||
|ontology_enrichment_uberon_v019=UBERON:0007196;1.77e-07;15!UBERON:0001558;1.77e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,2.09e-10,199;UBERON:0007196,1.51e-07,15;UBERON:0001558,1.51e-07,15;UBERON:0003104,3.64e-07,160;UBERON:0009142,3.64e-07,160;UBERON:0000915,7.31e-07,52;UBERON:0005256,7.54e-07,122;UBERON:0009569,8.04e-07,112 | |||
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| ||
|short_description=p3@SMARCD2 | |short_description=p3@SMARCD2 | ||
}} | }} |
Latest revision as of 18:24, 16 September 2015
Short description: | p3@SMARCD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SMARCD2_5end |
Coexpression cluster: | NA |
Association with transcript: | -56bp_to_ENST00000225742_5end |
EntrezGene: | SMARCD2 |
HGNC: | 11107 |
UniProt: | Q92925 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 8.37e-13 | 250 |
endodermal cell | 5.95e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
trunk | 2.09e-10 | 199 |
tracheobronchial tree | 1.51e-07 | 15 |
lower respiratory tract | 1.51e-07 | 15 |
mesenchyme | 3.64e-07 | 160 |
entire embryonic mesenchyme | 3.64e-07 | 160 |
thoracic segment of trunk | 7.31e-07 | 52 |
trunk mesenchyme | 7.54e-07 | 122 |
subdivision of trunk | 8.04e-07 | 112 |