FFCP PHASE1:Hg19::chr1:243419021..243419028,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9859 | |EntrezGene=9859 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28920 | |HGNC=28920 | ||
|TSSclassifier=strong | |||
|UniProt=E7ES90,F8W8A3,Q5SW79 | |UniProt=E7ES90,F8W8A3,Q5SW79 | ||
|association_with_transcript=-313bp_to_ENST00000424081,ENST00000532008,NM_001042404,NM_001042405,NM_014812,uc001hzs.2,uc001hzt.2,uc001hzu.2_5end | |association_with_transcript=-313bp_to_ENST00000424081,ENST00000532008,NM_001042404,NM_001042405,NM_014812,uc001hzs.2,uc001hzt.2,uc001hzu.2_5end | ||
|cluster_id=chr1:243419021..243419028,- | |||
|description=CAGE_peak_20_at_CEP170_5end | |description=CAGE_peak_20_at_CEP170_5end | ||
|id=chr1:243419021..243419028,- | |id=chr1:243419021..243419028,- | ||
|ontology_enrichment_celltype=CL:0002334!4.49e-12!12;CL:0000055!1.27e-11!180;CL:0000057!3.56e-11!75;CL:0000359!6.19e-11!32;CL:0000048!1.07e-09!430;CL:0000723!3.30e-09!436;CL:0000034!1.40e-08!444;CL:0002551!2.74e-08!6;CL:0000192!4.57e-08!42;CL:0000514!4.57e-08!42;CL:0000144!1.45e-07!625;CL:0000680!1.86e-07!57;CL:0000056!1.86e-07!57;CL:0000355!1.86e-07!57;CL:0002371!4.57e-07!591 | |ontology_enrichment_celltype=CL:0002334!4.49e-12!12;CL:0000055!1.27e-11!180;CL:0000057!3.56e-11!75;CL:0000359!6.19e-11!32;CL:0000048!1.07e-09!430;CL:0000723!3.30e-09!436;CL:0000034!1.40e-08!444;CL:0002551!2.74e-08!6;CL:0000192!4.57e-08!42;CL:0000514!4.57e-08!42;CL:0000144!1.45e-07!625;CL:0000680!1.86e-07!57;CL:0000056!1.86e-07!57;CL:0000355!1.86e-07!57;CL:0002371!4.57e-07!591 | ||
|ontology_enrichment_celltype_v019=CL:0002582;1.89e-27;3!CL:0002334;6.08e-26;12!CL:0002583;2.64e-18;2!CL:0002591;5.06e-10;1!CL:0002539;2.31e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002582,1.91e-27,3;CL:0002334,3.88e-26,12;CL:0002583,9.18e-19,2;CL:0002591,9.82e-10,1;CL:0002539,2.66e-08,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.10e-11!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;3.08e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.54e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0001637!1.43e-11!42;UBERON:0003509!1.43e-11!42;UBERON:0004572!1.43e-11!42;UBERON:0004573!1.02e-10!33;UBERON:0004571!1.02e-10!33;UBERON:0000914!1.36e-09!83;UBERON:0002329!1.36e-09!83;UBERON:0003077!1.36e-09!83;UBERON:0003059!1.36e-09!83;UBERON:0007282!1.36e-09!83;UBERON:0009618!1.36e-09!83;UBERON:0007285!1.36e-09!83;UBERON:0004290!2.10e-09!70;UBERON:0000486!4.70e-09!82;UBERON:0001981!2.29e-08!60;UBERON:0007500!2.29e-08!60;UBERON:0004537!2.29e-08!60;UBERON:0006965!2.29e-08!60;UBERON:0002118!3.98e-08!5;UBERON:0004532!3.98e-08!5;UBERON:0000055!7.25e-08!69;UBERON:0002049!3.31e-07!79;UBERON:0007798!3.31e-07!79;UBERON:0004872!5.78e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0004237;2.31e-08;10!UBERON:0004695;2.31e-08;10!UBERON:0002111;2.31e-08;10!UBERON:0004178;2.31e-08;10!UBERON:0002118;4.94e-08;5!UBERON:0002072;7.24e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004237,2.66e-08,10;UBERON:0004695,2.66e-08,10;UBERON:0002111,2.66e-08,10;UBERON:0004178,2.66e-08,10;UBERON:0002072,4.78e-08,5;UBERON:0002118,4.95e-08,5 | |||
|phase1_expression=0,0.428201047781966,0.281908808191942,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20538905604795,0,0.975865597581014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0.232429036905685,0,0,0,0.256160706529101,0.236482229888585,0,0,0,0,0,0.224723484445085,0,0.320929027076094,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0,0,0,0.324547393654683,0,0.398873881556595,0,0,0,0,0,0,0,0,0,0.208994966536811,0.258416759169329,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,0,0,0,0.633152558322899,0.662045904066094,0.286836620748814,0.709336764396714,0,0,0,0,0,0.163461903113459,0,0,0,0.624320153660641,1.1409436430889,0.597794722207204,0.23486899728753,0.485618833104395,0.140450806702248,0,0,0.103325781175765,0,0,0,0,0.336672227908132,0.250237039743928,1.10825646193673,0,0,0,0.226864366320042,0.179389635688862,0,0,0,0.103052529238439,0,0,0.843881661206331,0.194874010322397,0.252433774244115,0,0,0,0,0,0.193260853163297,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234817388471643,0,0,0.380508304469197,0,0,0.738651018262192,0.234004265139238,0.297262324577456,0,0,0.141775097242386,0,0,0,0,0,0.207328115540772,0,0.25248486685276,0,0,0,0,0.102827492703324,0,0,0,0,0.36669142910475,0.387815147273333,0,0,0.26593811658487,0,0,0,0,0,0,0,0.65147236858747,0,0,1.50719688529793,0.871533458600294,0.499864955910285,0,0,0,0,0,0,0.723906533337896,0.205476322550383,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35142424497814,0,0,0,0.664225598535437,0,0.521301686808497,0,0,0,0,0.213455115606889,0,0,0,0.248107807818777,0.920771839728375,0.280660094433074,0.768834895534206,0,1.28683136914886,0,1.69630663182921,1.77561725313127,2.05317890034523,3.11552657510173,1.39452454151951,0,0.200506470303285,0,0.114814448164607,0.728364672026868,0,0,0.15403067420883,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14853107599234,0,0,0,0,0,0,0,0,0,0.0890320356467374,0.495854746082934,0,0.255225424989168,0,0.464845549297286,1.88887408098384,0.6970372701606,0,1.06461206063404,0,0.37064843820784,0.429374660225974,0,0,0.190630193923825,0,0,0.95460974377781,0,0,0,0,0.404364963146632,0,0.842516912477962,0,0.974853958525138,0,0,0,1.13008116620243,0.551365343546124,1.99031692572366,0,0,0,0,0,0.281695602532241,0.286822704408103,0,0,0.354761064070598,0,0,0,0,0,0,0,0,0,0,0,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,0.766021480529467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0.533034776018635,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104421949505455,0,0,0,0,0,0,0,1.20990716048664,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0,0,0,0,0,0,0,0.745515213392595,0,0.271808412147228,0.104602846312333,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0.979762080328227,1.19730191562487,0,0,0,0,0,0,0,0,0,0.106787412567695,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.74627401443437,0,0,0,0,0,0,0,1.39893480524502,0.591420599958536,0.796483835818512,0,0.310525913752519,1.65882483136342,0.53168342911599,0.521745061811734,0,1.52322084867518,2.84809513243263,0.727394636810238,0.429642228169954,1.39210127963548,0.398095888698616,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0.308801447160972,0.438568099157414,0,0.192914038270915,0.337884881306145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0.0757786982182394,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0.428201047781966,0.281908808191942,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20538905604795,0,0.975865597581014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0.232429036905685,0,0,0,0.256160706529101,0.236482229888585,0,0,0,0,0,0.224723484445085,0,0.320929027076094,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0,0,0,0.324547393654683,0,0.398873881556595,0,0,0,0,0,0,0,0,0,0.208994966536811,0.258416759169329,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,0,0,0,0.633152558322899,0.662045904066094,0.286836620748814,0.709336764396714,0,0,0,0,0,0.163461903113459,0,0,0,0.624320153660641,1.1409436430889,0.597794722207204,0.23486899728753,0.485618833104395,0.140450806702248,0,0,0.103325781175765,0,0,0,0,0.336672227908132,0.250237039743928,1.10825646193673,0,0,0,0.226864366320042,0.179389635688862,0,0,0,0.103052529238439,0,0,0.843881661206331,0.194874010322397,0.252433774244115,0,0,0,0,0,0.193260853163297,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234817388471643,0,0,0.380508304469197,0,0,0.738651018262192,0.234004265139238,0.297262324577456,0,0,0.141775097242386,0,0,0,0,0,0.207328115540772,0,0.25248486685276,0,0,0,0,0.102827492703324,0,0,0,0,0.36669142910475,0.387815147273333,0,0,0.26593811658487,0,0,0,0,0,0,0,0.65147236858747,0,0,1.50719688529793,0.871533458600294,0.499864955910285,0,0,0,0,0,0,0.723906533337896,0.205476322550383,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35142424497814,0,0,0,0.664225598535437,0,0.521301686808497,0,0,0,0,0.213455115606889,0,0,0,0.248107807818777,0.920771839728375,0.280660094433074,0.768834895534206,0,1.28683136914886,0,1.69630663182921,1.77561725313127,2.05317890034523,3.11552657510173,1.39452454151951,0,0.200506470303285,0,0.114814448164607,0.728364672026868,0,0,0.15403067420883,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14853107599234,0,0,0,0,0,0,0,0,0,0.0890320356467374,0.495854746082934,0,0.255225424989168,0,0.464845549297286,1.88887408098384,0.6970372701606,0,1.06461206063404,0,0.37064843820784,0.429374660225974,0,0,0.190630193923825,0,0,0.95460974377781,0,0,0,0,0.404364963146632,0,0.842516912477962,0,0.974853958525138,0,0,0,1.13008116620243,0.551365343546124,1.99031692572366,0,0,0,0,0,0.281695602532241,0.286822704408103,0,0,0.354761064070598,0,0,0,0,0,0,0,0,0,0,0,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,0.766021480529467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0.533034776018635,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104421949505455,0,0,0,0,0,0,0,1.20990716048664,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0,0,0,0,0,0,0,0.745515213392595,0,0.271808412147228,0.104602846312333,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0.979762080328227,1.19730191562487,0,0,0,0,0,0,0,0,0,0.106787412567695,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.74627401443437,0,0,0,0,0,0,0,1.39893480524502,0.591420599958536,0.796483835818512,0,0.310525913752519,1.65882483136342,0.53168342911599,0.521745061811734,0,1.52322084867518,2.84809513243263,0.727394636810238,0.429642228169954,1.39210127963548,0.398095888698616,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0.308801447160972,0.438568099157414,0,0.192914038270915,0.337884881306145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0.0757786982182394,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p20@CEP170 | |short_description=p20@CEP170 | ||
}} | }} |
Latest revision as of 19:29, 16 September 2015
Short description: | p20@CEP170 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_CEP170_5end |
Coexpression cluster: | NA |
Association with transcript: | -313bp_to_ENST00000424081, ENST00000532008, NM_001042404, NM_001042405, NM_014812, uc001hzs.2, uc001hzt.2, uc001hzu.2_5end |
EntrezGene: | CEP170 |
HGNC: | 28920 |
UniProt: | E7ES90F8W8A3Q5SW79 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
visceral preadipocyte | 1.91e-27 | 3 |
preadipocyte | 3.88e-26 | 12 |
subcutaneous preadipocyte | 9.18e-19 | 2 |
smooth muscle cell of the pulmonary artery | 9.82e-10 | 1 |
aortic smooth muscle cell | 2.66e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
blood vessel smooth muscle | 2.66e-08 | 10 |
arterial system smooth muscle | 2.66e-08 | 10 |
artery smooth muscle tissue | 2.66e-08 | 10 |
aorta smooth muscle tissue | 2.66e-08 | 10 |
hypodermis | 4.78e-08 | 5 |
right ovary | 4.95e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.54e-10 | 14 |