FFCP PHASE1:Hg19::chr1:149824160..149824183,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=126961,333932,653604 | |EntrezGene=126961,333932,653604 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20503,20505,25311 | |HGNC=20503,20505,25311 | ||
|TSSclassifier=strong | |||
|UniProt=Q71DI3 | |UniProt=Q71DI3 | ||
|association_with_transcript=0bp_to_ENST00000403683,NM_001005464,NM_021059,uc001esy.2_5end | |association_with_transcript=0bp_to_ENST00000403683,NM_001005464,NM_021059,uc001esy.2_5end | ||
|cluster_id=chr1:149824160..149824183,+ | |||
|coexpression_cluster_id=C600 | |||
|description=CAGE_peak_1_at_HIST2H3A_5end,CAGE_peak_1_at_HIST2H3C_5end,CAGE_peak_1_at_HIST2H3D_5end | |description=CAGE_peak_1_at_HIST2H3A_5end,CAGE_peak_1_at_HIST2H3C_5end,CAGE_peak_1_at_HIST2H3D_5end | ||
|id=chr1:149824160..149824183,+ | |id=chr1:149824160..149824183,+ | ||
|ontology_enrichment_celltype=CL:0000012!2.33e-10!682;CL:0000003!4.23e-10!722;CL:0000548!2.72e-09!679;CL:0000004!2.72e-09!679;CL:0000255!2.72e-09!679;CL:0002032!1.38e-08!165;CL:0000837!1.38e-08!165;CL:0000037!5.29e-08!172;CL:0000566!5.29e-08!172;CL:0000988!4.17e-07!182 | |ontology_enrichment_celltype=CL:0000012!2.33e-10!682;CL:0000003!4.23e-10!722;CL:0000548!2.72e-09!679;CL:0000004!2.72e-09!679;CL:0000255!2.72e-09!679;CL:0002032!1.38e-08!165;CL:0000837!1.38e-08!165;CL:0000037!5.29e-08!172;CL:0000566!5.29e-08!172;CL:0000988!4.17e-07!182 | ||
|ontology_enrichment_celltype_v019=CL:0000236;4.77e-08;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,3.81e-09,53;CL:0000051,3.81e-09,53;CL:0000037,1.24e-08,168;CL:0000838,1.42e-08,52;CL:0002032,1.92e-08,161;CL:0000837,1.92e-08,161;CL:0000988,1.60e-07,177;CL:0000236,2.90e-07,14 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.21e-14!235;DOID:14566!5.42e-14!239;DOID:2531!1.52e-10!51;DOID:0060083!1.52e-10!51;DOID:0050686!4.40e-10!137;DOID:1240!9.08e-09!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001737!6.05e-08!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;5.42e-14;9!UBERON:0001557;5.42e-14;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,5.45e-14,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,9.41255205032485,13.8619741445515,12.4152715365853,8.29485757943862,0.369363174230364,0.612002073732759,0.313454721478088,0.286235987131057,0.410623275218653,0.376627918784408,0.152826811495903,0.57470412614962,0.157421562627358,1.18009283054671,0.767658796194425,4.4896675761662,0,0.90361775633475,0,1.39440961044543,1.27952309238679,159.718638998157,0,0,0,0,0,0,0.145398238779565,0,0,0.697287110717054,0.411167888021826,0.309706370895104,0,0.512321413058201,0.47296445977717,0.689491361473237,0,1.35426486594342,0.376484679085209,0,0.224723484445085,0.306083892370903,1.60464513538047,0.639337125799041,0.659702600373432,0.398927315243264,0,0.290209238628584,0,1.24564449799115,0.251248665256743,0,0,3.63239701580021,0.736555271975129,0.632924774881769,0,0.212604299965044,0,0.112328631146495,0.150176892841506,0,0,0,0,15.839662001519,7.64594055766984,2.66852776159066,7.68114400619713,6.00593980554019,8.04653415936277,3.96626923670917,8.58648379081828,0,0,0,3.96513985737078,1.68152568894461,207.283274717986,0,0,0,24.5764148224297,0,0,1.94826728407911,72.7510283460183,4.12448270464772,3.1014745241707,0.541607727530031,123.480032215551,108.339436517379,182.854949919288,190.957862290021,79.9856516628745,0,0,0,176.875883950901,0,1.71813722741315,0.253019692019503,5.09704662918555,3.90650072313851,10.4549724889321,1.50575119077773,1.66382594500744,2.49861453104692,1.65744076430812,2.46338399076314,0,0,0,0,0,40.1488444188685,0,0,0,0.795285947051099,0,0.378139268656271,0.221729397462564,0.087834785693126,0.0654895377488563,0.364295288292542,0,0,0,0,0,0,0,0.39752481473341,0.860234595106124,0,0,0,0,0.835979866147242,0.258416759169329,0,0,0,1.52054421143703,0,0,0,0.267899184852239,0,0.225222960966644,1.53316637465883,0.949265659568129,0.183201743930407,1.31780417436063,0,0,0,0.25326102332916,0.264818361626438,0,0,0.560677600142307,1.06748995729705,0,0,0,0,0,0,0.234321431833797,0,0.570471821544449,0,0.352303495931295,0.971237666208789,0.561803226808994,0,0.737005903870608,0,0,0,0,0,1.0100166837244,0.375355559615893,0,0,0.30648779579902,0.150238058906597,0.340296549480063,0,0,0,0.300091096084402,0.103052529238439,0,0,23.9662391782598,0,0,0,3.23292113637624,0,0,0,0,0,0.286804595389004,0.243947412259191,0,0.464775771478074,0.414644220061482,138.019505428969,218.621438086422,0,0,0,0,0,188.699346063551,148.860281338964,155.211103244962,151.985094425239,143.582553656896,136.193335369769,120.943683419667,86.729887585403,111.9614226714,0.738155454624648,0,0.4115740113314,1.47008711385542,0,0,0,1.32438929824395,0.245976877086227,16.4705097886585,0,0,0.402115889646523,0.0925884451585296,0,0,0,23.3020113999904,4.3441216867254,0,66.2069282984553,32.3432058798817,5.53143078571493,2.57545848628462,0,0,0.148631162288728,7.49870671894216,6.38332087155666,14.6028350159658,0,0.290633938513962,0.383382679165211,0,27.3830629781133,2.69526550203004,1.44119953416961,0.50496973370552,57.9100795944582,0.381988425558278,0,0,0.102827492703324,72.9833630560719,7.43148724839503,0,0.43596006883328,0.4400297149257,0,0,151.309192707524,0,0,0.257207374262142,0,0.532844358032199,0,0,0,1.30294473717494,0.355391948742546,0.791951872933429,0,0,0,2.43247561282381,6.02708509718552,6.32501818449095,0,0,77.0239287219879,0,0,0,0.896681151948218,0,0,0,0,0,0.773288812777695,0.502548796003046,100.7943227612,0,0,0,0,0,0,3.32753378449291,8.20773348466944,2.05013139544115,13.8226869691402,0,0,0,0,0,0.173767228936166,0,0,0,0,0,0.303127571446259,0,0.30239029332968,0,4.910783145218,0,0,0,0,0,0.308419387605311,0.177561725313127,0.0821271560138091,0.519254429183621,0.464841513839837,0.241718899183244,0,0,0.34444334449382,0,0.262248829918848,0,0,0.784349769176855,5.84556898613043,0.105551628892876,1.13733384070897,0.340187410553031,0.647747748306418,0,0,0,0.509752546090077,0.831076008928724,0.671624264166535,584.766091014708,1009.92514730919,0.256450125116389,0.328014645699706,0,0,1.28197250745681,0.330037999682352,0,0,0,0.386682873168488,0.462145851343933,0.460511024178389,0.275673144969061,0.429680979473094,0.145016693914229,0.681813019328807,0,0,0,10.5918551370505,0,0,0,0.6970372701606,0,0,0,0.18532421910392,0.143124886741991,0,0,0,0.255897791311334,0,0,0.78494864019923,0.359744915166629,0.274537029736055,0.117812402345686,0,0,0.421258456238981,0.48763373908959,0,1.05650146756755,0.136499911407986,0,0,0,0,0.438450885253763,0,8.52663177660623,0,0.30982349809975,0.563391205064483,47.1823348751329,10.8073945114433,0,0.709522128141196,0,0,0.379473173765715,1.04980416073495,0.0962221127255121,0,3.26672954583968,0.0941438007767792,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,2.41544127663434,1.298422916788,1.63626239701352,2.07254154547469,0.997896857164083,197.059025866205,0.211673582723883,94.4649846198956,0.280797178113459,0.684704037099577,1.09675927041116,137.848962399537,123.075122461766,0.481764225311099,1.00899853595524,0.851692475380653,0.687010689511529,1.22896305723383,0.447352215784832,0.500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| ||
|short_description=p1@HIST2H3A,p1@HIST2H3C,p1@HIST2H3D | |short_description=p1@HIST2H3A,p1@HIST2H3C,p1@HIST2H3D | ||
}} | }} |
Latest revision as of 20:39, 16 September 2015
Short description: | p1@HIST2H3A, p1@HIST2H3C, p1@HIST2H3D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HIST2H3A_5end, CAGE_peak_1_at_HIST2H3C_5end, CAGE_peak_1_at_HIST2H3D_5end |
Coexpression cluster: | C600_Reticulocytes_CD34_HES3GFP_Hep2_Mesenchymal_iPS_CD4 |
Association with transcript: | 0bp_to_ENST00000403683, NM_001005464, NM_021059, uc001esy.2_5end |
EntrezGene: | 126961,333932,653604 |
HGNC: | 20505, 25311&submit=Submit 20503, 20505, 25311 |
UniProt: | Q71DI3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 3.81e-09 | 53 |
common lymphoid progenitor | 3.81e-09 | 53 |
hematopoietic stem cell | 1.24e-08 | 168 |
lymphoid lineage restricted progenitor cell | 1.42e-08 | 52 |
hematopoietic oligopotent progenitor cell | 1.92e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.92e-08 | 161 |
hematopoietic cell | 1.60e-07 | 177 |
B cell | 2.90e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
larynx | 5.45e-14 | 9 |