FFCP PHASE2:Hg19::chr6:30890456..30890482,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:57176 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:21642 |TSScla...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=57176 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=21642 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
Latest revision as of 19:27, 17 September 2015
| Short description: | p11@VARS2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_11_at_VARS2_5end |
| Coexpression cluster: | C1044_Renal_amniotic_Mammary_chorionic_bile_prostate_Amniotic |
| Association with transcript: | 96bp_to_ENST00000477052_5end |
| EntrezGene: | VARS2 |
| HGNC: | 21642 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p11@VARS2 |
|---|
0.0
2.5
5.0
7.5
10.0
12.5
15.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| brush border epithelial cell | 6.91e-39 | 3 |
| kidney cortex tubule cell | 6.91e-39 | 3 |
| epithelial cell of proximal tubule | 6.91e-39 | 3 |
| kidney cortical cell | 4.50e-38 | 12 |
| renal cortical epithelial cell | 4.50e-38 | 12 |
| epithelial cell of nephron | 1.31e-30 | 15 |
| kidney cell | 4.33e-27 | 17 |
| kidney epithelial cell | 4.33e-27 | 17 |
| kidney tubule cell | 3.03e-26 | 10 |
| nephron tubule epithelial cell | 3.03e-26 | 10 |
Showing 1 to 10 of 14 entries
| Ontology term | p-value | n |
|---|---|---|
| renal cortex tubule | 6.91e-39 | 3 |
| region of nephron tubule | 6.91e-39 | 3 |
| proximal tubule | 6.91e-39 | 3 |
| cortex of kidney | 4.50e-38 | 12 |
| renal parenchyma | 4.50e-38 | 12 |
| amnion | 9.10e-37 | 7 |
| somatic layer of lateral plate mesoderm | 2.71e-32 | 8 |
| cortex | 1.31e-30 | 15 |
| nephron epithelium | 1.31e-30 | 15 |
| renal tubule | 1.31e-30 | 15 |
Showing 1 to 10 of 34 entries
