FFCP PHASE1:Hg19::chr1:38273288..38273308,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:38273288..38273308,- to FFCP PHASE1:Hg19::chr1:38273288..38273308,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79693 | |EntrezGene=79693 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=28905 | |HGNC=28905 | ||
|TSSclassifier=strong | |||
|UniProt=Q86U90 | |UniProt=Q86U90 | ||
|association_with_transcript=-398bp_to_AK027129_5end | |||
|cluster_id=chr1:38273288..38273308,- | |||
|description=CAGE_peak_3_at_YRDC_5end | |||
|id=chr1:38273288..38273308,- | |||
|ontology_enrichment_celltype=CL:0000066!5.35e-21!254;CL:0002321!2.17e-11!248;CL:0000220!3.36e-11!246;CL:0000548!1.53e-09!679;CL:0000004!1.53e-09!679;CL:0000255!1.53e-09!679;CL:0000012!3.15e-09!682;CL:0000076!1.70e-08!62;CL:0002076!1.17e-07!43;CL:0000039!4.43e-07!7;CL:0000586!4.43e-07!7;CL:0000077!9.88e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0000039;1.20e-08;7!CL:0000586;1.20e-08;7!CL:0000317;5.94e-08;2!CL:1000448;5.94e-08;2!CL:0002308;5.94e-08;2!CL:0002140;5.94e-08;2!CL:0002253;5.94e-08;2!CL:0000362;8.09e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000076,1.05e-09,63;CL:0000066,9.86e-09,253;CL:0000039,1.53e-08,7;CL:0000586,1.53e-08,7;CL:0000317,5.37e-08,2;CL:1000448,5.37e-08,2;CL:0002308,5.37e-08,2;CL:0002140,5.37e-08,2;CL:0002253,7.03e-08,2;CL:0000362,8.84e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.03e-13!106;DOID:14566!1.31e-12!239;DOID:162!5.78e-12!235;DOID:0050687!6.41e-11!143 | |||
|ontology_enrichment_disease_v019=DOID:299;9.32e-09;25!DOID:4468;5.94e-08;2!DOID:193;1.41e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:299,7.00e-09,25;DOID:4468,4.38e-08,2;DOID:193,1.34e-07,29;DOID:305,2.89e-07,106 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002419;5.94e-08;2!UBERON:0007771;5.94e-08;2!UBERON:0003297;5.94e-08;2!UBERON:0001821;5.94e-08;2!UBERON:0003487;5.94e-08;2!UBERON:0001820;5.94e-08;2!UBERON:0000473;1.13e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002419,5.37e-08,2;UBERON:0007771,5.37e-08,2;UBERON:0003297,5.37e-08,2;UBERON:0001821,5.37e-08,2;UBERON:0003487,5.37e-08,2;UBERON:0001820,5.37e-08,2;UBERON:0005089,5.37e-08,2;UBERON:0005088,5.37e-08,2;UBERON:0000473,1.40e-07,8 | |||
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| ||
|short_description=p3@YRDC | |||
}} | }} |
Latest revision as of 22:22, 17 September 2015
Short description: | p3@YRDC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_YRDC_5end |
Coexpression cluster: | NA |
Association with transcript: | -398bp_to_AK027129_5end |
EntrezGene: | YRDC |
HGNC: | 28905 |
UniProt: | Q86U90 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
squamous epithelial cell | 1.05e-09 | 63 |
epithelial cell | 9.86e-09 | 253 |
germ line cell | 1.53e-08 | 7 |
germ cell | 1.53e-08 | 7 |
sebum secreting cell | 5.37e-08 | 2 |
epithelial cell of sweat gland | 5.37e-08 | 2 |
epithelial cell of skin gland | 5.37e-08 | 2 |
acinar cell of sebaceous gland | 5.37e-08 | 2 |
epithelial cell of large intestine | 7.03e-08 | 2 |
epidermal cell | 8.84e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
skin gland | 5.37e-08 | 2 |
epidermis gland | 5.37e-08 | 2 |
gland of integumental system | 5.37e-08 | 2 |
sebaceous gland | 5.37e-08 | 2 |
skin sebaceous gland | 5.37e-08 | 2 |
sweat gland | 5.37e-08 | 2 |
sweat gland placode | 5.37e-08 | 2 |
sebaceous gland placode | 5.37e-08 | 2 |
testis | 1.40e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 7.00e-09 | 25 |
clear cell adenocarcinoma | 4.38e-08 | 2 |
reproductive organ cancer | 1.34e-07 | 29 |
carcinoma | 2.89e-07 | 106 |