FFCP PHASE1:Hg19::chr22:22398325..22398339,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=34302 | |HGNC=34302 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000337471,ENST00000546598,uc002zvu.2_5end | |association_with_transcript=0bp_to_ENST00000337471,ENST00000546598,uc002zvu.2_5end | ||
|cluster_id=chr22:22398325..22398339,- | |||
|coexpression_cluster_id=C682 | |coexpression_cluster_id=C682 | ||
|description=CAGE_peak_1_at_PRAMEL_5end | |description=CAGE_peak_1_at_PRAMEL_5end | ||
|id=chr22:22398325..22398339,- | |id=chr22:22398325..22398339,- | ||
|ontology_enrichment_celltype=CL:0000945!5.63e-77!24;CL:0000826!5.63e-77!24;CL:0000236!6.25e-51!14;CL:0000542!2.69e-35!53;CL:0000051!2.69e-35!53;CL:0000838!1.15e-32!52;CL:0002087!8.29e-17!119;CL:0000738!2.06e-13!140;CL:0002031!8.79e-12!124;CL:0000037!7.49e-10!172;CL:0000566!7.49e-10!172;CL:0000785!1.27e-09!2;CL:0000955!1.27e-09!2;CL:0000818!1.27e-09!2;CL:0000954!1.27e-09!2;CL:0000816!1.27e-09!2;CL:0000988!5.31e-09!182;CL:0002032!1.48e-08!165;CL:0000837!1.48e-08!165 | |ontology_enrichment_celltype=CL:0000945!5.63e-77!24;CL:0000826!5.63e-77!24;CL:0000236!6.25e-51!14;CL:0000542!2.69e-35!53;CL:0000051!2.69e-35!53;CL:0000838!1.15e-32!52;CL:0002087!8.29e-17!119;CL:0000738!2.06e-13!140;CL:0002031!8.79e-12!124;CL:0000037!7.49e-10!172;CL:0000566!7.49e-10!172;CL:0000785!1.27e-09!2;CL:0000955!1.27e-09!2;CL:0000818!1.27e-09!2;CL:0000954!1.27e-09!2;CL:0000816!1.27e-09!2;CL:0000988!5.31e-09!182;CL:0002032!1.48e-08!165;CL:0000837!1.48e-08!165 | ||
|ontology_enrichment_celltype_v019=CL:0000945;8.15e-117;24!CL:0000236;4.94e-78;13!CL:0000542;2.77e-37;53!CL:0000785;7.28e-09;1!CL:0000819;7.28e-09;1!CL:0002087;1.08e-08;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,7.68e-117,24;CL:0000826,7.68e-117,24;CL:0000236,2.58e-72,14;CL:0000542,2.36e-56,53;CL:0000051,2.36e-56,53;CL:0000838,5.31e-52,52;CL:0002087,1.17e-23,115;CL:0002031,3.22e-20,120;CL:0000738,1.98e-19,136;CL:0002032,8.04e-16,161;CL:0000837,8.04e-16,161;CL:0000037,5.31e-15,168;CL:0000988,4.84e-14,177;CL:0000819,7.56e-09,1 | |||
|ontology_enrichment_development_v019=CL:0000051;2.77e-37;53!UBERON:0001045;2.05e-08;1 | |||
|ontology_enrichment_disease=DOID:0060058!4.28e-11!10 | |ontology_enrichment_disease=DOID:0060058!4.28e-11!10 | ||
|ontology_enrichment_disease_v019=DOID:0060058;2.65e-12;10!DOID:0060073;7.28e-09;1!DOID:8675;7.28e-09;1!DOID:12603;1.71e-08;1!DOID:630;3.53e-08;1!DOID:0050177;3.53e-08;1!DOID:0050427;3.53e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,2.69e-12,10;DOID:0060073,7.56e-09,1;DOID:8675,7.56e-09,1;DOID:12603,1.84e-08,1;DOID:630,3.06e-08,1;DOID:0050177,3.06e-08,1;DOID:0050427,3.06e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0000178!1.11e-25!15;UBERON:0000179!1.11e-25!15;UBERON:0000463!1.11e-25!15;UBERON:0002106!1.03e-12!3;UBERON:0004854!1.03e-12!3;UBERON:0009034!1.03e-12!3;UBERON:0002095!1.03e-12!3;UBERON:0004782!1.03e-12!3;UBERON:0003281!1.03e-12!3;UBERON:0009664!1.03e-12!3;UBERON:0002296!1.03e-12!3;UBERON:0005602!1.03e-12!3;UBERON:0001179!1.03e-12!3;UBERON:0006293!1.03e-12!3;UBERON:0007023!1.80e-08!115 | |ontology_enrichment_uberon=UBERON:0000178!1.11e-25!15;UBERON:0000179!1.11e-25!15;UBERON:0000463!1.11e-25!15;UBERON:0002106!1.03e-12!3;UBERON:0004854!1.03e-12!3;UBERON:0009034!1.03e-12!3;UBERON:0002095!1.03e-12!3;UBERON:0004782!1.03e-12!3;UBERON:0003281!1.03e-12!3;UBERON:0009664!1.03e-12!3;UBERON:0002296!1.03e-12!3;UBERON:0005602!1.03e-12!3;UBERON:0001179!1.03e-12!3;UBERON:0006293!1.03e-12!3;UBERON:0007023!1.80e-08!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0001154;2.05e-08;1!UBERON:0001153;2.05e-08;1!UBERON:0009854;2.05e-08;1!UBERON:0002372;2.55e-08;1!UBERON:0001961;2.55e-08;1!UBERON:0001744;2.55e-08;1!UBERON:0001042;2.55e-08;1!UBERON:0001735;2.55e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001154,1.98e-08,1;UBERON:0001153,1.98e-08,1;UBERON:0001045,1.98e-08,1;UBERON:0002372,2.29e-08,1;UBERON:0001961,2.29e-08,1;UBERON:0001744,2.29e-08,1;UBERON:0001735,2.29e-08,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.95361992306356,4.18713006194723,7.08397031823113,0,0,0,0,0,0,14.0990305056149,14.3590924812296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.79981222306614,6.00752472388345,12.4531295540898,8.10787422876364,10.8106916499723,8.62128659931725,5.94940385506376,10.494591299889,3.41527781465669,1.17447437874188,4.20500550937752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,1.52234282769651,0.764637207142375,1.13929437434833,0.952927101831156,0.411362273086194,0,0.540031437238115,0.79312517629427,0,0,0,4.08766985276581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.86797481743607,0,0,2.21552649829925,0,0,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.0884575645033392,0,0,0,0,0,0,0,12.4069256666653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387956065953678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.538134166849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345701962667338,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308696632431779,0,0,0,0,0,0,0,0,1.12780701575824,0.193373663920732,0.299823467774787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.62673006756891,0.0717222053926763,0,0,0,0,0,0,0,0,0,2.61655931668334,1.9234109538194 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.95361992306356,4.18713006194723,7.08397031823113,0,0,0,0,0,0,14.0990305056149,14.3590924812296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.79981222306614,6.00752472388345,12.4531295540898,8.10787422876364,10.8106916499723,8.62128659931725,5.94940385506376,10.494591299889,3.41527781465669,1.17447437874188,4.20500550937752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,1.52234282769651,0.764637207142375,1.13929437434833,0.952927101831156,0.411362273086194,0,0.540031437238115,0.79312517629427,0,0,0,4.08766985276581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.86797481743607,0,0,2.21552649829925,0,0,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.0884575645033392,0,0,0,0,0,0,0,12.4069256666653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387956065953678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.538134166849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345701962667338,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308696632431779,0,0,0,0,0,0,0,0,1.12780701575824,0.193373663920732,0.299823467774787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.62673006756891,0.0717222053926763,0,0,0,0,0,0,0,0,0,2.61655931668334,1.9234109538194 | ||
|short_description=p1@PRAMEL | |short_description=p1@PRAMEL | ||
}} | }} |
Latest revision as of 07:04, 19 September 2015
Short description: | p1@PRAMEL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRAMEL_5end |
Coexpression cluster: | C682_Burkitt_lymphoma_CD19_appendix_tonsil_spleen_diffuse |
Association with transcript: | 0bp_to_ENST00000337471, ENST00000546598, uc002zvu.2_5end |
EntrezGene: | NA |
HGNC: | 34302 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 7.68e-117 | 24 |
pro-B cell | 7.68e-117 | 24 |
B cell | 2.58e-72 | 14 |
lymphocyte | 2.36e-56 | 53 |
common lymphoid progenitor | 2.36e-56 | 53 |
lymphoid lineage restricted progenitor cell | 5.31e-52 | 52 |
nongranular leukocyte | 1.17e-23 | 115 |
hematopoietic lineage restricted progenitor cell | 3.22e-20 | 120 |
leukocyte | 1.98e-19 | 136 |
hematopoietic oligopotent progenitor cell | 8.04e-16 | 161 |
hematopoietic multipotent progenitor cell | 8.04e-16 | 161 |
hematopoietic stem cell | 5.31e-15 | 168 |
hematopoietic cell | 4.84e-14 | 177 |
B-1 B cell | 7.56e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
vermiform appendix | 1.98e-08 | 1 |
caecum | 1.98e-08 | 1 |
midgut | 1.98e-08 | 1 |
tonsil | 2.29e-08 | 1 |
mucosa-associated lymphoid tissue | 2.29e-08 | 1 |
lymphoid tissue | 2.29e-08 | 1 |
tonsillar ring | 2.29e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 2.69e-12 | 10 |
lymphatic system cancer | 7.56e-09 | 1 |
lymphosarcoma | 7.56e-09 | 1 |
acute leukemia | 1.84e-08 | 1 |
genetic disease | 3.06e-08 | 1 |
monogenic disease | 3.06e-08 | 1 |
xeroderma pigmentosum | 3.06e-08 | 1 |