FFCP PHASE1:Hg19::chr6:123110370..123110382,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10924 | |EntrezGene=10924 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17389 | |HGNC=17389 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-54bp_to_ENST00000487215_5end | |association_with_transcript=-54bp_to_ENST00000487215_5end | ||
|cluster_id=chr6:123110370..123110382,+ | |||
|coexpression_cluster_id=C2841 | |coexpression_cluster_id=C2841 | ||
|description=CAGE_peak_2_at_SMPDL3A_5end | |description=CAGE_peak_2_at_SMPDL3A_5end | ||
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|ontology_enrichment_celltype=CL:0000860!1.74e-12!45;CL:0002057!4.06e-12!42;CL:0002194!1.35e-09!63;CL:0000576!1.35e-09!63;CL:0000040!1.35e-09!63;CL:0000559!1.35e-09!63;CL:0002009!2.55e-09!65;CL:0000557!2.18e-07!71;CL:0000839!3.84e-07!70 | |ontology_enrichment_celltype=CL:0000860!1.74e-12!45;CL:0002057!4.06e-12!42;CL:0002194!1.35e-09!63;CL:0000576!1.35e-09!63;CL:0000040!1.35e-09!63;CL:0000559!1.35e-09!63;CL:0002009!2.55e-09!65;CL:0000557!2.18e-07!71;CL:0000839!3.84e-07!70 | ||
|ontology_enrichment_celltype_v019=CL:0000860;8.26e-12;33!CL:0002057;8.26e-12;33!CL:0000473;1.13e-08;39!CL:0000234;1.13e-08;39!CL:0000576;1.43e-08;48 | |ontology_enrichment_celltype_v019=CL:0000860;8.26e-12;33!CL:0002057;8.26e-12;33!CL:0000473;1.13e-08;39!CL:0000234;1.13e-08;39!CL:0000576;1.43e-08;48 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.14e-12,42;CL:0002057,1.14e-12,42;CL:0000473,4.55e-11,48;CL:0000234,4.55e-11,48;CL:0002194,3.77e-09,59;CL:0000576,3.77e-09,59;CL:0000040,3.77e-09,59;CL:0000559,3.77e-09,59;CL:0002009,1.93e-08,61;CL:0000839,6.60e-07,66 | |||
|ontology_enrichment_development_v019=CL:0002057;8.89e-10;42 | |ontology_enrichment_development_v019=CL:0002057;8.89e-10;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!1.43e-18!659;UBERON:0000062!3.88e-15!511;UBERON:0002050!8.70e-14!605;UBERON:0005423!8.70e-14!605;UBERON:0000923!1.04e-13!604;UBERON:0005291!1.04e-13!604;UBERON:0006598!1.04e-13!604;UBERON:0002532!1.04e-13!604;UBERON:0000467!1.33e-13!625;UBERON:0000922!2.45e-13!612;UBERON:0000480!2.56e-13!626;UBERON:0002204!4.17e-08!167;UBERON:0000926!2.71e-07!448;UBERON:0004120!2.71e-07!448;UBERON:0006603!2.71e-07!448 | |ontology_enrichment_uberon=UBERON:0000468!1.43e-18!659;UBERON:0000062!3.88e-15!511;UBERON:0002050!8.70e-14!605;UBERON:0005423!8.70e-14!605;UBERON:0000923!1.04e-13!604;UBERON:0005291!1.04e-13!604;UBERON:0006598!1.04e-13!604;UBERON:0002532!1.04e-13!604;UBERON:0000467!1.33e-13!625;UBERON:0000922!2.45e-13!612;UBERON:0000480!2.56e-13!626;UBERON:0002204!4.17e-08!167;UBERON:0000926!2.71e-07!448;UBERON:0004120!2.71e-07!448;UBERON:0006603!2.71e-07!448 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,3.70e-07,118;UBERON:0001007,6.30e-07,145;UBERON:0001555,6.30e-07,145;UBERON:0007026,6.30e-07,145;UBERON:0002204,9.38e-07,167 | |||
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| ||
|short_description=p2@SMPDL3A | |short_description=p2@SMPDL3A | ||
}} | }} |
Latest revision as of 05:15, 20 September 2015
Short description: | p2@SMPDL3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SMPDL3A_5end |
Coexpression cluster: | C2841_sacrococcigeal_CD14_Smooth_colon_Prostate_anaplastic_tridermal |
Association with transcript: | -54bp_to_ENST00000487215_5end |
EntrezGene: | SMPDL3A |
HGNC: | 17389 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.14e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.14e-12 | 42 |
defensive cell | 4.55e-11 | 48 |
phagocyte | 4.55e-11 | 48 |
monopoietic cell | 3.77e-09 | 59 |
monocyte | 3.77e-09 | 59 |
monoblast | 3.77e-09 | 59 |
promonocyte | 3.77e-09 | 59 |
macrophage dendritic cell progenitor | 1.93e-08 | 61 |
myeloid lineage restricted progenitor cell | 6.60e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 3.70e-07 | 118 |
digestive system | 6.30e-07 | 145 |
digestive tract | 6.30e-07 | 145 |
primitive gut | 6.30e-07 | 145 |
musculoskeletal system | 9.38e-07 | 167 |