FFCP PHASE1:Hg19::chr11:113746212..113746268,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57646 | |EntrezGene=57646 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12625 | |HGNC=12625 | ||
|TSSclassifier=strong | |||
|UniProt=Q6NZX9,F5H2G4,F5H6Q3,Q96RU2 | |UniProt=Q6NZX9,F5H2G4,F5H6Q3,Q96RU2 | ||
|association_with_transcript=0bp_to_ENST00000260188,ENST00000537642,ENST00000537706,ENST00000540925,ENST00000542033,ENST00000544750,NM_020886,uc001poh.2,uc001poi.2,uc001poj.3,uc010rwy.1,uc010rwz.1_5end | |association_with_transcript=0bp_to_ENST00000260188,ENST00000537642,ENST00000537706,ENST00000540925,ENST00000542033,ENST00000544750,NM_020886,uc001poh.2,uc001poi.2,uc001poj.3,uc010rwy.1,uc010rwz.1_5end | ||
|cluster_id=chr11:113746212..113746268,- | |||
|description=CAGE_peak_1_at_USP28_5end | |description=CAGE_peak_1_at_USP28_5end | ||
|id=chr11:113746212..113746268,- | |id=chr11:113746212..113746268,- | ||
|ontology_enrichment_celltype=CL:0000542!1.06e-08!53;CL:0000051!1.06e-08!53;CL:0000945!1.85e-08!24;CL:0000826!1.85e-08!24;CL:0000838!2.02e-08!52;CL:0000236!2.02e-07!14 | |ontology_enrichment_celltype=CL:0000542!1.06e-08!53;CL:0000051!1.06e-08!53;CL:0000945!1.85e-08!24;CL:0000826!1.85e-08!24;CL:0000838!2.02e-08!52;CL:0000236!2.02e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000236;1.94e-08;13!CL:0000945;2.03e-08;24 | |ontology_enrichment_celltype_v019=CL:0000236;1.94e-08;13!CL:0000945;2.03e-08;24 | ||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.10e-08,53;CL:0000051,1.10e-08,53;CL:0000945,1.84e-08,24;CL:0000826,1.84e-08,24;CL:0000838,2.10e-08,52;CL:0000236,2.02e-07,14 | |||
|ontology_enrichment_development_v019=UBERON:0003104;3.09e-08;31 | |ontology_enrichment_development_v019=UBERON:0003104;3.09e-08;31 | ||
|ontology_enrichment_disease=DOID:305!1.68e-09!106;DOID:0050687!1.75e-08!143 | |ontology_enrichment_disease=DOID:305!1.68e-09!106;DOID:0050687!1.75e-08!143 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:305,1.91e-09,106;DOID:0050687,2.09e-08,143 | |||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.30e-09,114;UBERON:0001007,3.86e-07,145;UBERON:0001555,3.86e-07,145;UBERON:0007026,3.86e-07,145 | |||
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| ||
|short_description=p1@USP28 | |short_description=p1@USP28 | ||
}} | }} |
Latest revision as of 06:28, 25 September 2015
Short description: | p1@USP28 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_USP28_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000260188, ENST00000537642, ENST00000537706, ENST00000540925, ENST00000542033, ENST00000544750, NM_020886, uc001poh.2, uc001poi.2, uc001poj.3, uc010rwy.1, uc010rwz.1_5end |
EntrezGene: | USP28 |
HGNC: | 12625 |
UniProt: | Q6NZX9F5H2G4F5H6Q3Q96RU2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.10e-08 | 53 |
common lymphoid progenitor | 1.10e-08 | 53 |
lymphocyte of B lineage | 1.84e-08 | 24 |
pro-B cell | 1.84e-08 | 24 |
lymphoid lineage restricted progenitor cell | 2.10e-08 | 52 |
B cell | 2.02e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.30e-09 | 114 |
digestive system | 3.86e-07 | 145 |
digestive tract | 3.86e-07 | 145 |
primitive gut | 3.86e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.91e-09 | 106 |
cell type cancer | 2.09e-08 | 143 |