FFCP PHASE1:Mm9::chr14:52604201..52604213,+: Difference between revisions
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|id=chr14:52604201..52604213,+
|short_description=p9@Arhgef40
|description=CAGE_peak_9_at_Arhgef40_5end
|association_with_transcript=-294bp_to_ENSMUST00000093813,EN...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=268739 | |EntrezGene=268739 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=58 | |||
|TSSclassifier=NA | |||
|UniProt=Q3UPH7 | |UniProt=Q3UPH7 | ||
|association_with_transcript=-294bp_to_ENSMUST00000093813,ENSMUST00000100639,NM_001145921,NM_001145922,NM_198249,uc007tno.2,uc007tnp.2,uc007tnq.2,uc007tnr.2,uc007tns.2,uc007tnt.2_5end | |||
|cluster_id=chr14:52604201..52604213,+ | |||
|description=CAGE_peak_9_at_Arhgef40_5end | |||
|id=chr14:52604201..52604213,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,1.42e-23,3;CL:0000066,2.69e-23,25;CL:0000239,3.78e-20,6;CL:0000677,3.78e-20,6;CL:0000584,3.78e-20,6;CL:0000075,2.51e-17,7;CL:0002076,2.53e-17,15;CL:0002563,1.49e-13,9;CL:0002251,1.49e-13,9;CL:0000223,5.95e-13,20;CL:0000473,1.82e-10,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.81e-17,15;UBERON:0001962,2.24e-15,2;UBERON:0001961,2.24e-15,2;UBERON:0001744,2.24e-15,2;UBERON:0003350,1.49e-13,9;UBERON:0004808,1.49e-13,9;UBERON:0001277,1.49e-13,9;UBERON:0000485,3.83e-11,11;UBERON:0004923,7.57e-11,24;UBERON:0002465,1.42e-10,3;UBERON:0001242,1.81e-09,13;UBERON:0001262,1.81e-09,13;UBERON:0004786,1.81e-09,13;UBERON:0003199,1.47e-08,1 | |||
|phase1_expression=0.320297694209588,5.58360652222978,7.27998783023258,0,0,6.04365378882803,6.54115393667472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55987876469451,3.44113921600755,6.89078356938024,9.04600191934057,9.26526300549323,0,0,0.886922042621219,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0,0,0,0,0.219686182734472,0,0.139986421625363,0,0,0,0,0,0.286533439938757,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441737081903227,0,0,0,0,0,0.153606533256243,0,0,0,0.279182999001381,0,0.15279824777681,0,0,0,0.075726193333184,0.226714680320357,0,0,0,0,0,0,0.140444420131752,0.170430322578058,0,0,0,0,2.54805239706646,0,0.216491041011214,0,1.01104889002957,0,0.258937883647172,0,0,0,0.230615497256059,0,0,0,0,0,0,0.161766849947409,0,0,0,0,0.209446706813455,0,0.11981512450592,0,0.127070227073065,0.149790639404823,0,0.251308704225729,0,0,0,0,0.101839363850316,0.124406970610093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348252166522167,0,0,0,0,0.284163499395593,0.207125772535502,0,0,0,0,0,0,0,0,0,0.32833492815819,0.0810688095458557,0,0,0.134206418760372,0,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0.397912944082302,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0.295220295959204,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0.179397413521912,0,0,0,0,0,0,0,0,0,0,0.221464689648775,0,0.327726629431476,0.172684981865896,0,0,0,0,0.551873492609465,0.321101179975584,0.117211686592203,0,0,0,0.390438744296638,0,0,0.222798674082394,0,0,0,0,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0,0.18006109403131,0,0.214337035031592,0.177340233642274,0,0,0.304464949114599,0,0,0,0.16488625294148,0,0,0,0,0,0.18542530201051,0.170870880797853,0,0,0,0.136694227721025,0,1.01987057996313,0.419854356970974,0.690999869022119,0,0,0,0.108005340821801,0,0,0.134864346384821,0.0826534557253359,0,0,0,0,0,0,0,0,0.168956125490778,0,0,0,0,0,0,0.405450430580328,0.205421914329655,0.129920822977795,0.358053391334963,0,0.120195449519969,0,0.201932899896295,0,0.201652370273681,0,0.192423683280659,0.350630706544707,0,0,0,0,0.19318959403219,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0.0640251524048693,0,0,0.115884325944855,0,0,0,0,0.177475806159338,0,0,0,0,0,0,0,0,0.118635018124174,0,0,0.154936841185966,0,0,0,0,0,0,0.231867835620421 | |phase1_expression=0.320297694209588,5.58360652222978,7.27998783023258,0,0,6.04365378882803,6.54115393667472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55987876469451,3.44113921600755,6.89078356938024,9.04600191934057,9.26526300549323,0,0,0.886922042621219,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0,0,0,0,0.219686182734472,0,0.139986421625363,0,0,0,0,0,0.286533439938757,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441737081903227,0,0,0,0,0,0.153606533256243,0,0,0,0.279182999001381,0,0.15279824777681,0,0,0,0.075726193333184,0.226714680320357,0,0,0,0,0,0,0.140444420131752,0.170430322578058,0,0,0,0,2.54805239706646,0,0.216491041011214,0,1.01104889002957,0,0.258937883647172,0,0,0,0.230615497256059,0,0,0,0,0,0,0.161766849947409,0,0,0,0,0.209446706813455,0,0.11981512450592,0,0.127070227073065,0.149790639404823,0,0.251308704225729,0,0,0,0,0.101839363850316,0.124406970610093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348252166522167,0,0,0,0,0.284163499395593,0.207125772535502,0,0,0,0,0,0,0,0,0,0.32833492815819,0.0810688095458557,0,0,0.134206418760372,0,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0.397912944082302,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0.295220295959204,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0.179397413521912,0,0,0,0,0,0,0,0,0,0,0.221464689648775,0,0.327726629431476,0.172684981865896,0,0,0,0,0.551873492609465,0.321101179975584,0.117211686592203,0,0,0,0.390438744296638,0,0,0.222798674082394,0,0,0,0,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0,0.18006109403131,0,0.214337035031592,0.177340233642274,0,0,0.304464949114599,0,0,0,0.16488625294148,0,0,0,0,0,0.18542530201051,0.170870880797853,0,0,0,0.136694227721025,0,1.01987057996313,0.419854356970974,0.690999869022119,0,0,0,0.108005340821801,0,0,0.134864346384821,0.0826534557253359,0,0,0,0,0,0,0,0,0.168956125490778,0,0,0,0,0,0,0.405450430580328,0.205421914329655,0.129920822977795,0.358053391334963,0,0.120195449519969,0,0.201932899896295,0,0.201652370273681,0,0.192423683280659,0.350630706544707,0,0,0,0,0.19318959403219,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0.0640251524048693,0,0,0.115884325944855,0,0,0,0,0.177475806159338,0,0,0,0,0,0,0,0,0.118635018124174,0,0,0.154936841185966,0,0,0,0,0,0,0.231867835620421 | ||
|short_description=p9@Arhgef40 | |||
}} | }} |
Latest revision as of 01:03, 26 September 2015
Short description: | p9@Arhgef40 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_Arhgef40_5end |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | -294bp_to_ENSMUST00000093813, ENSMUST00000100639, NM_001145921, NM_001145922, NM_198249, uc007tno.2, uc007tnp.2, uc007tnq.2, uc007tnr.2, uc007tns.2, uc007tnt.2_5end |
EntrezGene: | Arhgef40 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 1.42e-23 | 3 |
epithelial cell | 2.69e-23 | 25 |
brush border epithelial cell | 3.78e-20 | 6 |
gut absorptive cell | 3.78e-20 | 6 |
enterocyte | 3.78e-20 | 6 |
columnar/cuboidal epithelial cell | 2.51e-17 | 7 |
endo-epithelial cell | 2.53e-17 | 15 |
intestinal epithelial cell | 1.49e-13 | 9 |
epithelial cell of alimentary canal | 1.49e-13 | 9 |
endodermal cell | 5.95e-13 | 20 |
defensive cell | 1.82e-10 | 7 |
Ontology term | p-value | n |
---|---|---|
mucosa | 1.81e-17 | 15 |
gut-associated lymphoid tissue | 2.24e-15 | 2 |
mucosa-associated lymphoid tissue | 2.24e-15 | 2 |
lymphoid tissue | 2.24e-15 | 2 |
epithelium of mucosa | 1.49e-13 | 9 |
gastrointestinal system epithelium | 1.49e-13 | 9 |
intestinal epithelium | 1.49e-13 | 9 |
simple columnar epithelium | 3.83e-11 | 11 |
organ component layer | 7.57e-11 | 24 |
lymphoid system | 1.42e-10 | 3 |
intestinal mucosa | 1.81e-09 | 13 |
wall of intestine | 1.81e-09 | 13 |
gastrointestinal system mucosa | 1.81e-09 | 13 |
egg chamber | 1.47e-08 | 1 |