CL:0000010: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
mNo edit summary |
||
| (2 intermediate revisions by 2 users not shown) | |||
| Line 1: | Line 1: | ||
{{CL | {{CL | ||
|id=CL:0000010 | |id=CL:0000010 | ||
|name=obsolete_cell line cell | |name=cell culture cell;;obsolete_cell line cell | ||
|namespace=efo | |namespace=cell;;efo | ||
|def="A cell in vitro that is propagated as part of a cell culture." [ReO:mhb] | |def="A cell in vitro that is propagated as part of a cell culture." [ReO:mhb] | ||
|xref= | |xref= | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
| Line 20: | Line 19: | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | ||
|is_obsolete=true | |is_obsolete=true | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Latest revision as of 14:20, 28 January 2020
| Name: | cell culture cell;;obsolete_cell line cell |
|---|---|
| Namespace: | cell;;efo |
| Definition: | "A cell in vitro that is propagated as part of a cell culture." [ReO:mhb] |
| Synonyms: | "cell line cell" NARROW [] |
| Comments: | The class has been re-labeled to 'culture' instead of 'line', as this class intends to cover cultured cells of multicellular and unicellular organisms, and both immortal and mortal cultured cells. 'Cell line' has different meanings to different people, in some cases referring to a culture that has been passaged, and in others referring to cultures that are immortal. 'Cell line cell' is included, however, as a narrow synonym. |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000578(experimentally modified cell in vitro) |
|---|
Children
| is a: | CL:0000001 (primary cell culture cell),CL:0000002 (permanent cell line cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
Mouse (Mus musculus)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000010 (cell culture cell;;obsolete_cell line cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results for this cluster
