FFCP PHASE1:Hg19::chr14:107013453..107013460,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=5607 | |HGNC=5607 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=16bp_to_ENST00000390625_5end | |association_with_transcript=16bp_to_ENST00000390625_5end | ||
|cluster_id=chr14:107013453..107013460,- | |||
|coexpression_cluster_id=C218 | |||
|description=CAGE_peak_2_at_IGHV3-49_5end | |description=CAGE_peak_2_at_IGHV3-49_5end | ||
|id=chr14:107013453..107013460,- | |id=chr14:107013453..107013460,- | ||
|ontology_enrichment_celltype=CL:0000236!1.39e-29!14;CL:0000945!3.42e-16!24;CL:0000826!3.42e-16!24 | |ontology_enrichment_celltype=CL:0000236!1.39e-29!14;CL:0000945!3.42e-16!24;CL:0000826!3.42e-16!24 | ||
|ontology_enrichment_celltype_v019=CL:0000236;4.36e-75;13!CL:0000945;6.29e-40;24!CL:0000542;2.42e-14;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,1.18e-69,14;CL:0000945,5.96e-40,24;CL:0000826,5.96e-40,24;CL:0000838,1.66e-17,52;CL:0000542,3.85e-17,53;CL:0000051,3.85e-17,53;CL:0002087,7.34e-07,115 | |||
|ontology_enrichment_development_v019=CL:0000051;2.42e-14;53!UBERON:0001045;6.59e-10;1!UBERON:0008801;1.06e-09;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.41e-29!115;UBERON:0003408!2.52e-08!10;UBERON:0001829!3.61e-08!2;UBERON:0004177!1.30e-07!7;UBERON:0000178!1.71e-07!15;UBERON:0000179!1.71e-07!15;UBERON:0000463!1.71e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;2.64e-10;33!UBERON:0002372;3.74e-10;1!UBERON:0001961;3.74e-10;1!UBERON:0001744;3.74e-10;1!UBERON:0001042;3.74e-10;1!UBERON:0001735;3.74e-10;1!UBERON:0000029;6.59e-10;1!UBERON:0001154;6.59e-10;1!UBERON:0001153;6.59e-10;1!UBERON:0009854;6.59e-10;1!UBERON:0001831;1.06e-09;1!UBERON:0001567;1.06e-09;1!UBERON:0001155;5.83e-09;9!UBERON:0000160;1.36e-07;17!UBERON:0000059;2.04e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002372,3.74e-10,1;UBERON:0001961,3.74e-10,1;UBERON:0001744,3.74e-10,1;UBERON:0001735,3.74e-10,1;UBERON:0007023,3.85e-10,114;UBERON:0000029,6.31e-10,1;UBERON:0001154,7.50e-10,1;UBERON:0001153,7.50e-10,1;UBERON:0001045,7.50e-10,1;UBERON:0001831,1.06e-09,1;UBERON:0001567,1.06e-09,1;UBERON:0008801,1.06e-09,1;UBERON:0001155,5.52e-09,9;UBERON:0005409,7.05e-08,25;UBERON:0000160,1.36e-07,17;UBERON:0000059,1.95e-07,11 | |||
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| ||
|short_description=p2@IGHV3-49 | |short_description=p2@IGHV3-49 | ||
}} | }} |
Latest revision as of 22:47, 18 September 2015
Short description: | p2@IGHV3-49 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_IGHV3-49_5end |
Coexpression cluster: | C218_tonsil_lymph_CD19_spleen_colon_appendix_salivary |
Association with transcript: | 16bp_to_ENST00000390625_5end |
EntrezGene: | NA |
HGNC: | 5607 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 1.18e-69 | 14 |
lymphocyte of B lineage | 5.96e-40 | 24 |
pro-B cell | 5.96e-40 | 24 |
lymphoid lineage restricted progenitor cell | 1.66e-17 | 52 |
lymphocyte | 3.85e-17 | 53 |
common lymphoid progenitor | 3.85e-17 | 53 |
nongranular leukocyte | 7.34e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
tonsil | 3.74e-10 | 1 |
mucosa-associated lymphoid tissue | 3.74e-10 | 1 |
lymphoid tissue | 3.74e-10 | 1 |
tonsillar ring | 3.74e-10 | 1 |
adult organism | 3.85e-10 | 114 |
lymph node | 6.31e-10 | 1 |
vermiform appendix | 7.50e-10 | 1 |
caecum | 7.50e-10 | 1 |
midgut | 7.50e-10 | 1 |
parotid gland | 1.06e-09 | 1 |
cheek | 1.06e-09 | 1 |
parotid gland primordium | 1.06e-09 | 1 |
colon | 5.52e-09 | 9 |
gastrointestinal system | 7.05e-08 | 25 |
intestine | 1.36e-07 | 17 |
large intestine | 1.95e-07 | 11 |