FFCP PHASE1:Hg19::chr17:38256590..38256599,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9572 | |EntrezGene=9572 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7962 | |HGNC=7962 | ||
|TSSclassifier=strong | |||
|UniProt=F1D8S3,P20393 | |UniProt=F1D8S3,P20393 | ||
|association_with_transcript=373bp_to_NM_021724,uc002htz.1,uc010cwq.1_5end | |association_with_transcript=373bp_to_NM_021724,uc002htz.1,uc010cwq.1_5end | ||
|cluster_id=chr17:38256590..38256599,- | |||
|description=CAGE_peak_8_at_NR1D1_5end | |description=CAGE_peak_8_at_NR1D1_5end | ||
|id=chr17:38256590..38256599,- | |id=chr17:38256590..38256599,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000136;1.78e-07;13 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0007297;1.30e-09;2!UBERON:0009117;8.14e-07;10!UBERON:0005564;8.14e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.31e-24!115;UBERON:0001049!8.65e-09!57;UBERON:0005068!8.65e-09!57;UBERON:0006241!8.65e-09!57;UBERON:0007135!8.65e-09!57;UBERON:0000955!9.93e-08!69;UBERON:0006238!9.93e-08!69;UBERON:0002616!2.22e-07!59;UBERON:0001017!2.88e-07!82;UBERON:0003080!3.04e-07!42;UBERON:0002780!8.56e-07!41;UBERON:0001890!8.56e-07!41;UBERON:0006240!8.56e-07!41;UBERON:0005743!8.79e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0003135;1.52e-09;11!UBERON:0000473;1.03e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.40e-14,114;UBERON:0003135,1.69e-09,11;UBERON:0000473,1.14e-08,8 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,2.53299878168311,1.26343974685366,0.261185628199839,0.245733936501509,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0.136874425072884,0,0.152826811495903,0.0821005894499457,0,0.393364276848904,0,0.154816123316076,0,0.30120591877825,0.369754010166788,0,0,0,0,0.200544447470142,0,0,0,0.515151135268373,0,0,0,0,0,0,0,0,0,0,0.645484683583826,1.35426486594342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0.637812899895131,0.209658645508376,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411202997999018,0,0,0.473447805734733,0,0,0.294605907474837,0.664601683750863,0.541607727530031,0.128091319725675,0,0,0,0.289803085735052,0,0,1.04535523804977,0,0,0,0,0,0,0,0.150575119077773,0.255973222308837,0,0,0,0.201606743224732,0,0.289648807765598,0,0,0,0,0,0.579386075843295,0,0,0,0,0,0.785874452986276,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0.17859945656816,0,0,0,0,0,0,0,0.436094052142534,0,0,0.264818361626438,0.286836620748814,0,0,0,0.24666754841716,0.311211035399766,0,0,0,0,0,0.312160076830321,0,0.298897361103602,0.117434498643765,0,0,0.408308342509787,0,0,0,0.494533858557114,0,0,0,0,0,0,0,0.600952235626387,0,0.358779271377724,0.213557388818567,0,0.300091096084402,0.206105058476878,0.257640540045629,0.18611685633159,0.168776332241266,0.194874010322397,0,0,0.323292113637624,0.355009592516614,0.10075209822764,0,0.193260853163297,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.207322110030741,0,0.36497735907583,0,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,1.26755034821831,0,0.590789906681404,0,0.122988438543114,0,0.548751427043128,1.1240175325762,0.100528972411631,0,0,0,0,0,0,0,0,0,1.58040879591855,0,0,0,0.148631162288728,0,0.16798212819886,0,0.0895585227028483,0,0,0,0.176096868026452,2.28060927094849,0.576479813667846,1.76739406796932,0,1.14596527667483,0,0,0.308482478109971,0,0.285826432630578,0,0,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0.410952645100767,0.179060963239896,0,0.197030760201927,0,0.128343036279748,0.508189248444927,0,0,0,0,0,0,0.828831026872071,0,0,0,0,0.178428988797162,0,0,0.300946099727719,0,0,0,0,0.173767228936166,0,0,0.413536052245775,0.431428401637234,0.106727557803444,4.85004114314015,0,0.30239029332968,0,0,0,0.128139149255701,0,0,0,0,0.355123450626254,0.164254312027618,0,0,0.362578348774867,0,0.644566922551274,0,0.182091168006717,0.262248829918848,0.902399225814824,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.824328093181778,0.0915694648183434,0.247528499761764,0,0,0,0.386682873168488,0,0,0,0,0,0,0.178064071293475,0,0.192190067365106,0,0.10115778085555,0.929691098594572,0,0,0.616067160352178,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0.243713489631284,0,0.136499911407986,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0.354761064070598,1.05553817648832,0,0,0.349934720244983,0.0962221127255121,0.670302275535787,0,1.50630081242847,0,1.68471475667626,0.443430153536676,0,0,0,0,0,0,0,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46508179271894,0,0,0.284136146806413,0.47748896947538,0,0.307160702099232,0.994147647766298,0.140669416410513,1.11308705022906,0,0,0.398495976502139,0,0,0,0.246169610922139,0.622079175323615,0.179736702294654,0,0,2.17015492401254,0,0,0,1.48428957058962,0,0.260427761085233,0,0.724999575434793,0,0,0,1.37897349296586,0.583209226766509,0,0.885741385813839,0.120596438625408,1.52581736317083,0.774054819518572,0.591095237907095,0.87754158861589,0,0,7.00247352384553,0,0,0.0897576444097721,0,0.31900115973192,0.641183153813036,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0.141353071433941,0.432777279484182,0.995261931078505,1.85760885457012,2.4441205797345,0,0.123563938946503,0,0.134802265961354,0,1.1713222286267,0,0.19566461893209,0.242780379534093,0,0,0.30607276163049,0.379119477770928,0.450970258243478,0.103688191397247,0,0,0.627865836814451,0,0,0,0,0.783939179315021,0,3.14508002835654,0,0.0967563312890851,0.0730893170861856,0.0821154570532092,2.61870344518732,0.0882561266915003,0.90392296312213,0,0.19871461170299,0.189932387867636,0,0,0.85381197895741,0.19980960958213,0,0,0,0.288109595976299,0.124252535565433,0,0.135904206073614,0,0.101998217636322,0.577901179803038,0,0.136905378891993,0,0,0,0,0,0.717873024576814,0,0,0.446342914883745,0.134366944973453,0,0,0.0787831823072236,0,0.202210631562555,0,0.0846733320657845,0,0.544813624446302,0,0.412618309791701,0,0,1.5476039091159,0.303747783290123,0,0,0.209818352539992,0.105600336519406,0,0,2.85878130549347,2.64836788146173,0,0.542999601753713,0,0,0,0,0,0,2.19828350517124,2.65013777824443,0,0.39669780522807,0,0,1.38823636338003,0.157204305099666,0,0,0,0,0,1.08803560673895,1.2534494701135,0.919036730290385,2.62298104567844,0.942324577501406,0,1.09823638411767,0.876336514945499,0.573409195690071,0.998361463831671,0.124192805882767,0.138348634936231,0.124980407962107,0.909894705249887,0,0,0,0,0.298509605773748,0,0,0,0,0,0,0.604923695052956,0,0,0.159296767163702,0.449803112163605,0,0,0.797525143673985,0,0,0.380805212168795,0.406870733204662,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0.71635536432595,0,0,0.353378291891762,0,0,0,0,0.303859956177382,0.276516872303462,0,0,0,0,0,0,0,0,0.172214979660816,0,0.552317850755522,0.139879507719444,0,0.127894371303652,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0.798169295285756,1.02558182120378,0,0.691572524642179,0.807378228159255,0,0,0.11796972334774,0.183428598521679,0,0.381382095467167,0,0,1.20336525358812,0.20170506870352,0.781514011233092,0,0.163771917510097,0.443568258651136,0.472763092328763,0,0.620060389503552,0.19024743058172,0,0.548257766857182,0,1.05522746615772,0.127762427639595,1.07140367175657,0.336283722218824,1.21393120847326,0.455324382702595,0.177404740325278,0.115233987555779,0.514464028312255,0.0679697329768317,0.657727735628491,0.118193840883968,0,2.27629969266491,0.471346769748006,0,0,0,0,0.285906176706625,0.158013611732727,0,0,0,0.207216164163037,0.17071847709395,0,0,0.118332000730565,0.340853619036631,2.54032230114557,0,0,0.955538938977433,0,0,0.121917924982269,3.23714418593947,6.05710560451857,0,0.485710993059139,0,0.198950775161368,0,0,0,0.150962843566674,0.848915739187391,0.437119121007915,0.470317296361523,0.490296643507811,0.235676547101626,0.588925401344836,0,0,0.509781344063451,0.187967835959707,0.128915775947154,0.0999411559249289,0,0,0.0802413666891683,0,0.917458566809082,0.286679166302903,0.315543124386369,0.543931921527318,0,0,0,0,0,0,0,0,0.101988829741982,0.534434810531121,2.57305718697566,2.005660314339,4.31938579843965,0.267964130156178,0,0,0.852935927603924,0,0.322944549180031,0.186224142887574,0,0.700118741059814,0,1.74173398317569,0,0.202056159043763,0.78894425931944,0.665320713092027,0.244209805832924,0.533636729388577,0,0.179650404213174,0,0.733448665097199,0,0.665756774185513,0.201273793591026,0 | |phase1_expression=0,0,0.140954404095971,0,0,0,2.53299878168311,1.26343974685366,0.261185628199839,0.245733936501509,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0.136874425072884,0,0.152826811495903,0.0821005894499457,0,0.393364276848904,0,0.154816123316076,0,0.30120591877825,0.369754010166788,0,0,0,0,0.200544447470142,0,0,0,0.515151135268373,0,0,0,0,0,0,0,0,0,0,0.645484683583826,1.35426486594342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0.637812899895131,0.209658645508376,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411202997999018,0,0,0.473447805734733,0,0,0.294605907474837,0.664601683750863,0.541607727530031,0.128091319725675,0,0,0,0.289803085735052,0,0,1.04535523804977,0,0,0,0,0,0,0,0.150575119077773,0.255973222308837,0,0,0,0.201606743224732,0,0.289648807765598,0,0,0,0,0,0.579386075843295,0,0,0,0,0,0.785874452986276,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0.17859945656816,0,0,0,0,0,0,0,0.436094052142534,0,0,0.264818361626438,0.286836620748814,0,0,0,0.24666754841716,0.311211035399766,0,0,0,0,0,0.312160076830321,0,0.298897361103602,0.117434498643765,0,0,0.408308342509787,0,0,0,0.494533858557114,0,0,0,0,0,0,0,0.600952235626387,0,0.358779271377724,0.213557388818567,0,0.300091096084402,0.206105058476878,0.257640540045629,0.18611685633159,0.168776332241266,0.194874010322397,0,0,0.323292113637624,0.355009592516614,0.10075209822764,0,0.193260853163297,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.207322110030741,0,0.36497735907583,0,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,1.26755034821831,0,0.590789906681404,0,0.122988438543114,0,0.548751427043128,1.1240175325762,0.100528972411631,0,0,0,0,0,0,0,0,0,1.58040879591855,0,0,0,0.148631162288728,0,0.16798212819886,0,0.0895585227028483,0,0,0,0.176096868026452,2.28060927094849,0.576479813667846,1.76739406796932,0,1.14596527667483,0,0,0.308482478109971,0,0.285826432630578,0,0,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0.410952645100767,0.179060963239896,0,0.197030760201927,0,0.128343036279748,0.508189248444927,0,0,0,0,0,0,0.828831026872071,0,0,0,0,0.178428988797162,0,0,0.300946099727719,0,0,0,0,0.173767228936166,0,0,0.413536052245775,0.431428401637234,0.106727557803444,4.85004114314015,0,0.30239029332968,0,0,0,0.128139149255701,0,0,0,0,0.355123450626254,0.164254312027618,0,0,0.362578348774867,0,0.644566922551274,0,0.182091168006717,0.262248829918848,0.902399225814824,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.824328093181778,0.0915694648183434,0.247528499761764,0,0,0,0.386682873168488,0,0,0,0,0,0,0.178064071293475,0,0.192190067365106,0,0.10115778085555,0.929691098594572,0,0,0.616067160352178,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0.243713489631284,0,0.136499911407986,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0.354761064070598,1.05553817648832,0,0,0.349934720244983,0.0962221127255121,0.670302275535787,0,1.50630081242847,0,1.68471475667626,0.443430153536676,0,0,0,0,0,0,0,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46508179271894,0,0,0.284136146806413,0.47748896947538,0,0.307160702099232,0.994147647766298,0.140669416410513,1.11308705022906,0,0,0.398495976502139,0,0,0,0.246169610922139,0.622079175323615,0.179736702294654,0,0,2.17015492401254,0,0,0,1.48428957058962,0,0.260427761085233,0,0.724999575434793,0,0,0,1.37897349296586,0.583209226766509,0,0.885741385813839,0.120596438625408,1.52581736317083,0.774054819518572,0.591095237907095,0.87754158861589,0,0,7.00247352384553,0,0,0.0897576444097721,0,0.31900115973192,0.641183153813036,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0.141353071433941,0.432777279484182,0.995261931078505,1.85760885457012,2.4441205797345,0,0.123563938946503,0,0.134802265961354,0,1.1713222286267,0,0.19566461893209,0.242780379534093,0,0,0.30607276163049,0.379119477770928,0.450970258243478,0.103688191397247,0,0,0.627865836814451,0,0,0,0,0.783939179315021,0,3.14508002835654,0,0.0967563312890851,0.0730893170861856,0.0821154570532092,2.61870344518732,0.0882561266915003,0.90392296312213,0,0.19871461170299,0.189932387867636,0,0,0.85381197895741,0.19980960958213,0,0,0,0.288109595976299,0.124252535565433,0,0.135904206073614,0,0.101998217636322,0.577901179803038,0,0.136905378891993,0,0,0,0,0,0.717873024576814,0,0,0.446342914883745,0.134366944973453,0,0,0.0787831823072236,0,0.202210631562555,0,0.0846733320657845,0,0.544813624446302,0,0.412618309791701,0,0,1.5476039091159,0.303747783290123,0,0,0.209818352539992,0.105600336519406,0,0,2.85878130549347,2.64836788146173,0,0.542999601753713,0,0,0,0,0,0,2.19828350517124,2.65013777824443,0,0.39669780522807,0,0,1.38823636338003,0.157204305099666,0,0,0,0,0,1.08803560673895,1.2534494701135,0.919036730290385,2.62298104567844,0.942324577501406,0,1.09823638411767,0.876336514945499,0.573409195690071,0.998361463831671,0.124192805882767,0.138348634936231,0.124980407962107,0.909894705249887,0,0,0,0,0.298509605773748,0,0,0,0,0,0,0.604923695052956,0,0,0.159296767163702,0.449803112163605,0,0,0.797525143673985,0,0,0.380805212168795,0.406870733204662,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0.71635536432595,0,0,0.353378291891762,0,0,0,0,0.303859956177382,0.276516872303462,0,0,0,0,0,0,0,0,0.172214979660816,0,0.552317850755522,0.139879507719444,0,0.127894371303652,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0.798169295285756,1.02558182120378,0,0.691572524642179,0.807378228159255,0,0,0.11796972334774,0.183428598521679,0,0.381382095467167,0,0,1.20336525358812,0.20170506870352,0.781514011233092,0,0.163771917510097,0.443568258651136,0.472763092328763,0,0.620060389503552,0.19024743058172,0,0.548257766857182,0,1.05522746615772,0.127762427639595,1.07140367175657,0.336283722218824,1.21393120847326,0.455324382702595,0.177404740325278,0.115233987555779,0.514464028312255,0.0679697329768317,0.657727735628491,0.118193840883968,0,2.27629969266491,0.471346769748006,0,0,0,0,0.285906176706625,0.158013611732727,0,0,0,0.207216164163037,0.17071847709395,0,0,0.118332000730565,0.340853619036631,2.54032230114557,0,0,0.955538938977433,0,0,0.121917924982269,3.23714418593947,6.05710560451857,0,0.485710993059139,0,0.198950775161368,0,0,0,0.150962843566674,0.848915739187391,0.437119121007915,0.470317296361523,0.490296643507811,0.235676547101626,0.588925401344836,0,0,0.509781344063451,0.187967835959707,0.128915775947154,0.0999411559249289,0,0,0.0802413666891683,0,0.917458566809082,0.286679166302903,0.315543124386369,0.543931921527318,0,0,0,0,0,0,0,0,0.101988829741982,0.534434810531121,2.57305718697566,2.005660314339,4.31938579843965,0.267964130156178,0,0,0.852935927603924,0,0.322944549180031,0.186224142887574,0,0.700118741059814,0,1.74173398317569,0,0.202056159043763,0.78894425931944,0.665320713092027,0.244209805832924,0.533636729388577,0,0.179650404213174,0,0.733448665097199,0,0.665756774185513,0.201273793591026,0 | ||
|short_description=p8@NR1D1 | |short_description=p8@NR1D1 | ||
}} | }} |
Latest revision as of 23:59, 19 September 2015
Short description: | p8@NR1D1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_NR1D1_5end |
Coexpression cluster: | NA |
Association with transcript: | 373bp_to_NM_021724, uc002htz.1, uc010cwq.1_5end |
EntrezGene: | NR1D1 |
HGNC: | 7962 |
UniProt: | F1D8S3P20393 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.40e-14 | 114 |
male reproductive organ | 1.69e-09 | 11 |
testis | 1.14e-08 | 8 |