FFCP PHASE1:Hg19::chr12:52882275..52882287,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:52882275..52882287,- | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_at_chr12:52882275..52882287,- | |description=CAGE_peak_at_chr12:52882275..52882287,- | ||
|id=chr12:52882275..52882287,- | |id=chr12:52882275..52882287,- | ||
|ontology_enrichment_celltype=CL:0002076!5.96e-24!43;CL:0002159!4.23e-23!13;CL:0002368!2.65e-22!13;CL:0000223!2.93e-16!59;CL:0000066!1.01e-14!254;CL:0002166!8.72e-13!3;CL:0002328!2.39e-12!3;CL:0002202!1.27e-10!9;CL:0002632!1.27e-10!9;CL:0000240!1.92e-10!6;CL:0000311!1.92e-10!6;CL:0000079!1.92e-10!6;CL:0000237!1.92e-10!6;CL:0000036!1.92e-10!6;CL:0000357!1.92e-10!6;CL:0000114!1.92e-10!6;CL:0002077!5.40e-10!33;CL:0000244!8.84e-10!4;CL:0000731!8.84e-10!4;CL:0002327!3.69e-09!4;CL:0000575!7.40e-09!2;CL:0000362!5.27e-08!8;CL:0000312!1.20e-07!5;CL:0002251!1.24e-07!21;CL:0000622!2.23e-07!5 | |ontology_enrichment_celltype=CL:0002076!5.96e-24!43;CL:0002159!4.23e-23!13;CL:0002368!2.65e-22!13;CL:0000223!2.93e-16!59;CL:0000066!1.01e-14!254;CL:0002166!8.72e-13!3;CL:0002328!2.39e-12!3;CL:0002202!1.27e-10!9;CL:0002632!1.27e-10!9;CL:0000240!1.92e-10!6;CL:0000311!1.92e-10!6;CL:0000079!1.92e-10!6;CL:0000237!1.92e-10!6;CL:0000036!1.92e-10!6;CL:0000357!1.92e-10!6;CL:0000114!1.92e-10!6;CL:0002077!5.40e-10!33;CL:0000244!8.84e-10!4;CL:0000731!8.84e-10!4;CL:0002327!3.69e-09!4;CL:0000575!7.40e-09!2;CL:0000362!5.27e-08!8;CL:0000312!1.20e-07!5;CL:0002251!1.24e-07!21;CL:0000622!2.23e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002159;1.06e-20;14!CL:0002166;1.74e-16;3!CL:0000244;1.31e-12;4!CL:0000731;1.31e-12;4!CL:0002537;1.77e-10;5!CL:0000312;2.84e-10;5!CL:0002368;9.87e-09;13!CL:0000240;1.04e-08;6!CL:0000311;1.04e-08;6!CL:0000079;1.04e-08;6!CL:0000237;1.04e-08;6!CL:0002077;1.01e-07;34!CL:0000575;3.92e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,1.74e-20,14;CL:0002166,1.37e-16,3;CL:0000244,6.84e-13,4;CL:0000731,6.84e-13,4;CL:0002537,1.47e-10,5;CL:0000312,4.32e-10,5;CL:0002368,1.00e-08,13;CL:0000240,1.47e-08,6;CL:0000311,1.47e-08,6;CL:0000079,1.47e-08,6;CL:0000237,1.47e-08,6;CL:0000036,1.47e-08,6;CL:0000357,1.47e-08,6;CL:0000114,1.47e-08,6;CL:0002077,2.05e-08,34;CL:0000575,5.60e-07,2;CL:0002076,6.75e-07,42 | |||
|ontology_enrichment_development_v019=CL:0000357;1.04e-08;6!CL:0000114;1.04e-08;6!UBERON:0008814;2.50e-07;2!UBERON:0010056;2.50e-07;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0001708;1.31e-12;4!UBERON:0008895;1.31e-12;4!UBERON:0005631;2.30e-11;10!UBERON:0000158;2.30e-11;10!UBERON:0011159;2.84e-10;5!UBERON:0000365;2.84e-10;5!UBERON:0005910;1.04e-08;6!UBERON:0000305;9.88e-08;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001708,1.10e-12,4;UBERON:0008895,1.10e-12,4;UBERON:0000365,1.69e-10,5;UBERON:0011159,2.47e-10,5;UBERON:0005910,6.77e-09,6;UBERON:0010188,9.27e-09,6;UBERON:0002539,9.27e-09,6;UBERON:0008816,9.27e-09,6;UBERON:0005631,2.61e-08,14;UBERON:0000158,2.61e-08,14;UBERON:0000305,8.64e-08,7;UBERON:0004871,6.42e-07,8 | |||
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| ||
|short_description=p@chr12:52882275..52882287,- | |short_description=p@chr12:52882275..52882287,- | ||
}} | }} |
Latest revision as of 09:33, 24 July 2015
Short description: | p@chr12:52882275..52882287, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:52882275..52882287, - |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 1.74e-20 | 14 |
epithelial cell of Malassez | 1.37e-16 | 3 |
transitional epithelial cell | 6.84e-13 | 4 |
urothelial cell | 6.84e-13 | 4 |
amnion mesenchymal stem cell | 1.47e-10 | 5 |
keratinocyte | 4.32e-10 | 5 |
respiratory epithelial cell | 1.00e-08 | 13 |
stratified squamous epithelial cell | 1.47e-08 | 6 |
keratin accumulating cell | 1.47e-08 | 6 |
stratified epithelial cell | 1.47e-08 | 6 |
keratinizing barrier epithelial cell | 1.47e-08 | 6 |
epithelial fate stem cell | 1.47e-08 | 6 |
stratified epithelial stem cell | 1.47e-08 | 6 |
surface ectodermal cell | 1.47e-08 | 6 |
ecto-epithelial cell | 2.05e-08 | 34 |
corneal epithelial cell | 5.60e-07 | 2 |
endo-epithelial cell | 6.75e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
jaw skeleton | 1.10e-12 | 4 |
splanchnocranium | 1.10e-12 | 4 |
urothelium | 1.69e-10 | 5 |
primary subdivision of cranial skeletal system | 2.47e-10 | 5 |
transitional epithelium | 6.77e-09 | 6 |
protuberance | 9.27e-09 | 6 |
pharyngeal arch | 9.27e-09 | 6 |
embryonic head | 9.27e-09 | 6 |
extraembryonic membrane | 2.61e-08 | 14 |
membranous layer | 2.61e-08 | 14 |
amnion | 8.64e-08 | 7 |
somatic layer of lateral plate mesoderm | 6.42e-07 | 8 |