FFCP PHASE1:Hg19::chr12:53200837..53200852,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:53200837..53200852,- | |||
|coexpression_cluster_id=C60 | |||
|description=CAGE_peak_at_chr12:53200837..53200852,- | |description=CAGE_peak_at_chr12:53200837..53200852,- | ||
|id=chr12:53200837..53200852,- | |id=chr12:53200837..53200852,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002623;1.14e-10;3!CL:0000622;6.58e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002623,1.09e-10,3;CL:0000622,6.39e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0009143;7.48e-30;1!UBERON:0008814;1.54e-15;2!UBERON:0010056;1.54e-15;2 | |||
|ontology_enrichment_disease=DOID:178!9.61e-12!1;DOID:326!9.61e-12!1;DOID:3978!9.61e-12!1;DOID:3394!9.61e-12!1;DOID:5844!9.61e-12!1 | |ontology_enrichment_disease=DOID:178!9.61e-12!1;DOID:326!9.61e-12!1;DOID:3978!9.61e-12!1;DOID:3394!9.61e-12!1;DOID:5844!9.61e-12!1 | ||
|ontology_enrichment_disease_v019=DOID:4362;6.58e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:4362,6.77e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000341!4.86e-22!2;UBERON:0003127!2.13e-21!2;UBERON:0006562!1.07e-15!11;UBERON:0001723!2.10e-15!3;UBERON:0001033!2.10e-15!3;UBERON:0010056!2.10e-15!3;UBERON:0002372!4.06e-12!1;UBERON:0001961!4.06e-12!1;UBERON:0001744!4.06e-12!1;UBERON:0001735!4.06e-12!1;UBERON:0000989!6.26e-12!1;UBERON:0008811!6.26e-12!1;UBERON:0006258!6.26e-12!1;UBERON:0005876!6.26e-12!1;UBERON:0004874!6.26e-12!1;UBERON:0001042!2.66e-10!10;UBERON:0009145!2.66e-10!10;UBERON:0000078!8.27e-10!18;UBERON:0000166!1.97e-08!21;UBERON:0000002!5.36e-08!6;UBERON:0001560!5.36e-08!6;UBERON:0003126!9.10e-07!7;UBERON:0001005!9.10e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0001723;1.49e-38;3!UBERON:0001033;1.49e-38;3!UBERON:0002372;2.37e-29;1!UBERON:0001961;2.37e-29;1!UBERON:0001744;2.37e-29;1!UBERON:0001042;2.37e-29;1!UBERON:0001735;2.37e-29;1!UBERON:0000165;1.28e-16;28!UBERON:0000341;1.33e-15;2!UBERON:0006562;2.05e-15;2!UBERON:0001043;6.73e-11;3!UBERON:0001041;4.29e-09;14!UBERON:0001555;2.07e-08;54!UBERON:0000153;7.15e-08;54!UBERON:0004921;1.40e-07;33!UBERON:0007811;1.41e-07;52!UBERON:0000161;6.87e-07;19!UBERON:0000166;6.87e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001723,1.49e-38,3;UBERON:0001033,1.49e-38,3;UBERON:0010056,1.49e-38,3;UBERON:0002372,2.37e-29,1;UBERON:0001961,2.37e-29,1;UBERON:0001744,2.37e-29,1;UBERON:0001735,2.37e-29,1;UBERON:0001042,4.28e-26,10;UBERON:0009145,4.28e-26,10;UBERON:0006562,8.35e-24,11;UBERON:0000166,5.39e-21,22;UBERON:0000165,4.49e-16,29;UBERON:0000930,4.49e-16,29;UBERON:0000341,1.33e-15,2;UBERON:0001557,3.96e-14,19;UBERON:0000161,4.68e-13,36;UBERON:0000153,9.34e-12,62;UBERON:0007811,9.34e-12,62;UBERON:0001043,6.73e-11,3;UBERON:0009143,6.73e-11,3;UBERON:0001444,1.01e-09,49;UBERON:0000033,1.45e-08,56;UBERON:0001041,1.81e-08,87;UBERON:0008814,2.77e-07,18 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11538995422883,0.461701551022782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.3309241163113,0,0,0,0,0,0.391102765469606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38251932362818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.46318936653433,0.23806443146374,0,0,0,0,0,6.7492191848058,5.4757328173645,3.83906702183149,0.143444410785353,0.332660356546013,0,0,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11538995422883,0.461701551022782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.3309241163113,0,0,0,0,0,0.391102765469606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38251932362818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.46318936653433,0.23806443146374,0,0,0,0,0,6.7492191848058,5.4757328173645,3.83906702183149,0.143444410785353,0.332660356546013,0,0,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p@chr12:53200837..53200852,- | |short_description=p@chr12:53200837..53200852,- | ||
}} | }} |
Latest revision as of 09:40, 24 July 2015
Short description: | p@chr12:53200837..53200852, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:53200837..53200852, - |
Coexpression cluster: | C60_esophagus_tonsil_throat_tongue_uterus_cervix_cervical |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
acinar cell of salivary gland | 1.09e-10 | 3 |
acinar cell | 6.39e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
tongue | 1.49e-38 | 3 |
gustatory system | 1.49e-38 | 3 |
future tongue | 1.49e-38 | 3 |
tonsil | 2.37e-29 | 1 |
mucosa-associated lymphoid tissue | 2.37e-29 | 1 |
lymphoid tissue | 2.37e-29 | 1 |
tonsillar ring | 2.37e-29 | 1 |
chordate pharynx | 4.28e-26 | 10 |
pharyngeal region of foregut | 4.28e-26 | 10 |
pharynx | 8.35e-24 | 11 |
oral opening | 5.39e-21 | 22 |
mouth | 4.49e-16 | 29 |
stomodeum | 4.49e-16 | 29 |
throat | 1.33e-15 | 2 |
upper respiratory tract | 3.96e-14 | 19 |
orifice | 4.68e-13 | 36 |
anterior region of body | 9.34e-12 | 62 |
craniocervical region | 9.34e-12 | 62 |
esophagus | 6.73e-11 | 3 |
esophageal region | 6.73e-11 | 3 |
subdivision of head | 1.01e-09 | 49 |
head | 1.45e-08 | 56 |
foregut | 1.81e-08 | 87 |
pharyngeal arch system | 2.77e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
cervical cancer | 6.77e-07 | 5 |