FFCP PHASE1:Hg19::chr19:48102065..48102072,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:48102065..48102072,+ | |||
|description=CAGE_peak_at_chr19:48102065..48102072,+ | |description=CAGE_peak_at_chr19:48102065..48102072,+ | ||
|id=chr19:48102065..48102072,+ | |id=chr19:48102065..48102072,+ | ||
|ontology_enrichment_celltype=CL:0000223!1.61e-10!59;CL:0000066!2.12e-10!254;CL:0002076!1.39e-07!43;CL:0000083!2.08e-07!4 | |ontology_enrichment_celltype=CL:0000223!1.61e-10!59;CL:0000066!2.12e-10!254;CL:0002076!1.39e-07!43;CL:0000083!2.08e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:1001319;1.48e-40;1!CL:1000600;1.48e-40;1!CL:0002535;4.66e-21;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1001319,3.30e-40,1;CL:1000600,3.30e-40,1;CL:0002535,4.66e-21,2 | |||
|ontology_enrichment_development_v019=UBERON:0008814;4.66e-21;2!UBERON:0010056;4.66e-21;2 | |||
|ontology_enrichment_disease=DOID:0050687!1.40e-17!143;DOID:305!2.42e-17!106;DOID:162!1.46e-16!235;DOID:14566!5.50e-16!239;DOID:299!9.59e-13!25;DOID:1749!1.27e-10!14;DOID:170!2.63e-08!6;DOID:4468!1.09e-07!2;DOID:1793!2.08e-07!4;DOID:193!3.33e-07!29;DOID:4929!5.41e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.76e-26;14!DOID:4468;4.66e-21;2!DOID:4362;2.97e-09;5!DOID:120;7.03e-07;27 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.90e-26,14;DOID:4468,5.70e-21,2;DOID:305,5.66e-10,106;DOID:4362,2.97e-09,5;DOID:0050687,1.55e-07,143;DOID:120,7.24e-07,27 | |||
|ontology_enrichment_uberon=UBERON:0000344!4.69e-12!12;UBERON:0002394!2.04e-07!4;UBERON:0003928!2.04e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0004645;1.48e-40;1!UBERON:0001256;1.48e-40;1!UBERON:0001259;1.48e-40;1!UBERON:0001255;4.66e-21;2!UBERON:0006955;4.66e-21;2!UBERON:0004801;4.66e-21;2!UBERON:0001556;4.66e-21;2!UBERON:0001723;1.60e-14;3!UBERON:0001033;1.60e-14;3!UBERON:0003343;3.10e-11;4!UBERON:0004785;3.10e-11;4!UBERON:0000365;2.97e-09;5!UBERON:0000344;5.93e-09;20!UBERON:0000002;6.33e-08;6!UBERON:0000974;6.33e-08;6!UBERON:0005910;6.33e-08;6!UBERON:0001560;6.33e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004645,3.30e-40,1;UBERON:0001256,3.30e-40,1;UBERON:0001259,3.30e-40,1;UBERON:0006955,4.66e-21,2;UBERON:0004801,4.66e-21,2;UBERON:0001255,6.96e-21,2;UBERON:0001556,6.96e-21,2;UBERON:0001723,1.22e-14,3;UBERON:0001033,1.22e-14,3;UBERON:0010056,1.22e-14,3;UBERON:0003343,2.53e-11,4;UBERON:0004785,2.53e-11,4;UBERON:0000365,3.49e-09,5;UBERON:0000344,5.93e-09,20;UBERON:0000002,6.34e-08,6;UBERON:0001560,6.34e-08,6;UBERON:0005910,7.25e-08,6 | |||
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| ||
|short_description=p@chr19:48102065..48102072,+ | |short_description=p@chr19:48102065..48102072,+ | ||
}} | }} |
Latest revision as of 15:33, 27 July 2015
Short description: | p@chr19:48102065..48102072, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:48102065..48102072, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bladder cell | 3.30e-40 | 1 |
lower urinary tract cell | 3.30e-40 | 1 |
epithelial cell of cervix | 4.66e-21 | 2 |
Ontology term | p-value | n |
---|---|---|
urinary bladder urothelium | 3.30e-40 | 1 |
wall of urinary bladder | 3.30e-40 | 1 |
mucosa of urinary bladder | 3.30e-40 | 1 |
uterine epithelium | 4.66e-21 | 2 |
cervix epithelium | 4.66e-21 | 2 |
urinary bladder | 6.96e-21 | 2 |
lower urinary tract | 6.96e-21 | 2 |
tongue | 1.22e-14 | 3 |
gustatory system | 1.22e-14 | 3 |
future tongue | 1.22e-14 | 3 |
mucosa of oral region | 2.53e-11 | 4 |
respiratory system mucosa | 2.53e-11 | 4 |
urothelium | 3.49e-09 | 5 |
mucosa | 5.93e-09 | 20 |
uterine cervix | 6.34e-08 | 6 |
neck of organ | 6.34e-08 | 6 |
transitional epithelium | 7.25e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.90e-26 | 14 |
clear cell adenocarcinoma | 5.70e-21 | 2 |
carcinoma | 5.66e-10 | 106 |
cervical cancer | 2.97e-09 | 5 |
cell type cancer | 1.55e-07 | 143 |
female reproductive organ cancer | 7.24e-07 | 27 |