FFCP PHASE1:Hg19::chr2:65257848..65257867,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:65257848..65257867,+ | |||
|coexpression_cluster_id=C682 | |||
|description=CAGE_peak_at_chr2:65257848..65257867,+ | |description=CAGE_peak_at_chr2:65257848..65257867,+ | ||
|id=chr2:65257848..65257867,+ | |id=chr2:65257848..65257867,+ | ||
|ontology_enrichment_celltype=CL:0000945!1.28e-45!24;CL:0000826!1.28e-45!24;CL:0000236!1.15e-32!14;CL:0000542!6.00e-20!53;CL:0000051!6.00e-20!53;CL:0000838!2.94e-18!52;CL:0002087!1.27e-12!119;CL:0000738!9.41e-10!140;CL:0000842!2.37e-09!3;CL:0002031!5.40e-08!124;CL:0000037!1.72e-07!172;CL:0000566!1.72e-07!172;CL:0000224!4.03e-07!4;CL:0000988!9.72e-07!182 | |ontology_enrichment_celltype=CL:0000945!1.28e-45!24;CL:0000826!1.28e-45!24;CL:0000236!1.15e-32!14;CL:0000542!6.00e-20!53;CL:0000051!6.00e-20!53;CL:0000838!2.94e-18!52;CL:0002087!1.27e-12!119;CL:0000738!9.41e-10!140;CL:0000842!2.37e-09!3;CL:0002031!5.40e-08!124;CL:0000037!1.72e-07!172;CL:0000566!1.72e-07!172;CL:0000224!4.03e-07!4;CL:0000988!9.72e-07!182 | ||
|ontology_enrichment_celltype_v019=CL:0000236;3.57e-65;13!CL:0000945;5.64e-59;24!CL:0000542;1.93e-20;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,1.94e-60,14;CL:0000945,5.14e-59,24;CL:0000826,5.14e-59,24;CL:0000838,4.04e-26,52;CL:0000542,1.38e-25,53;CL:0000051,1.38e-25,53;CL:0002087,1.67e-10,115;CL:0002031,5.61e-10,120;CL:0000738,1.49e-08,136;CL:0002032,6.81e-07,161;CL:0000837,6.81e-07,161 | |||
|ontology_enrichment_development_v019=CL:0000051;1.93e-20;53!UBERON:0004872;5.94e-12;7!UBERON:0001045;2.37e-10;1!UBERON:0009143;8.99e-10;1!UBERON:0006298;8.99e-10;1!UBERON:0008801;8.99e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060058;1.79e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,1.72e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0007023!5.16e-14!115;UBERON:0001829!9.90e-08!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0001829;8.23e-18;2!UBERON:0002106;7.19e-13;3!UBERON:0002372;1.80e-10;1!UBERON:0001961;1.80e-10;1!UBERON:0001744;1.80e-10;1!UBERON:0001042;1.80e-10;1!UBERON:0001735;1.80e-10;1!UBERON:0001154;2.37e-10;1!UBERON:0001153;2.37e-10;1!UBERON:0009854;2.37e-10;1!UBERON:0000029;8.99e-10;1!UBERON:0001831;8.99e-10;1!UBERON:0001736;8.99e-10;1!UBERON:0001567;8.99e-10;1!UBERON:0004177;4.53e-08;5!UBERON:0005057;4.53e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001829,6.93e-18,2;UBERON:0002106,8.34e-13,3;UBERON:0004854,8.34e-13,3;UBERON:0009034,8.34e-13,3;UBERON:0002095,8.34e-13,3;UBERON:0004782,8.34e-13,3;UBERON:0003281,8.34e-13,3;UBERON:0009664,8.34e-13,3;UBERON:0002296,8.34e-13,3;UBERON:0005602,8.34e-13,3;UBERON:0001179,8.34e-13,3;UBERON:0006293,8.34e-13,3;UBERON:0002372,1.80e-10,1;UBERON:0001961,1.80e-10,1;UBERON:0001744,1.80e-10,1;UBERON:0001735,1.80e-10,1;UBERON:0001154,2.37e-10,1;UBERON:0001153,2.37e-10,1;UBERON:0001045,2.37e-10,1;UBERON:0001831,7.55e-10,1;UBERON:0001567,7.55e-10,1;UBERON:0008801,7.55e-10,1;UBERON:0000029,8.24e-10,1;UBERON:0001736,8.99e-10,1;UBERON:0006298,8.99e-10,1 | |||
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| ||
|short_description=p@chr2:65257848..65257867,+ | |short_description=p@chr2:65257848..65257867,+ | ||
}} | }} |
Latest revision as of 11:28, 29 July 2015
Short description: | p@chr2:65257848..65257867, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:65257848..65257867, + |
Coexpression cluster: | C682_Burkitt_lymphoma_CD19_appendix_tonsil_spleen_diffuse |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 1.94e-60 | 14 |
lymphocyte of B lineage | 5.14e-59 | 24 |
pro-B cell | 5.14e-59 | 24 |
lymphoid lineage restricted progenitor cell | 4.04e-26 | 52 |
lymphocyte | 1.38e-25 | 53 |
common lymphoid progenitor | 1.38e-25 | 53 |
nongranular leukocyte | 1.67e-10 | 115 |
hematopoietic lineage restricted progenitor cell | 5.61e-10 | 120 |
leukocyte | 1.49e-08 | 136 |
hematopoietic oligopotent progenitor cell | 6.81e-07 | 161 |
hematopoietic multipotent progenitor cell | 6.81e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
major salivary gland | 6.93e-18 | 2 |
spleen | 8.34e-13 | 3 |
gastrointestinal system mesentery | 8.34e-13 | 3 |
stomach region | 8.34e-13 | 3 |
mesentery | 8.34e-13 | 3 |
gastrointestinal system serosa | 8.34e-13 | 3 |
mesentery of stomach | 8.34e-13 | 3 |
gut mesentery | 8.34e-13 | 3 |
dorsal mesentery | 8.34e-13 | 3 |
dorsal mesogastrium | 8.34e-13 | 3 |
peritoneal cavity | 8.34e-13 | 3 |
spleen primordium | 8.34e-13 | 3 |
tonsil | 1.80e-10 | 1 |
mucosa-associated lymphoid tissue | 1.80e-10 | 1 |
lymphoid tissue | 1.80e-10 | 1 |
tonsillar ring | 1.80e-10 | 1 |
vermiform appendix | 2.37e-10 | 1 |
caecum | 2.37e-10 | 1 |
midgut | 2.37e-10 | 1 |
parotid gland | 7.55e-10 | 1 |
cheek | 7.55e-10 | 1 |
parotid gland primordium | 7.55e-10 | 1 |
lymph node | 8.24e-10 | 1 |
submandibular gland | 8.99e-10 | 1 |
submandibular gland primordium | 8.99e-10 | 1 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 1.72e-08 | 10 |