FFCP PHASE1:Hg19::chr5:17604288..17604293,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:17604288..17604293,+ | |||
|coexpression_cluster_id=C99 | |||
|description=CAGE_peak_at_chr5:17604288..17604293,+ | |description=CAGE_peak_at_chr5:17604288..17604293,+ | ||
|id=chr5:17604288..17604293,+ | |id=chr5:17604288..17604293,+ | ||
|ontology_enrichment_celltype=CL:0002602!1.42e-09!2 | |ontology_enrichment_celltype=CL:0002602!1.42e-09!2 | ||
|ontology_enrichment_celltype_v019=CL:0002564;2.89e-12;3!CL:0002590;2.89e-12;3!CL:0000333;7.01e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002590,2.89e-12,3;CL:0002564,3.24e-12,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3095!9.97e-11!22;DOID:2994!9.97e-11!22;DOID:14566!6.83e-08!239;DOID:162!1.85e-07!235;DOID:0050687!2.69e-07!143;DOID:171!9.16e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:3095;5.40e-07;22!DOID:2994;5.40e-07;22!DOID:169;8.97e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,5.24e-07,22;DOID:2994,5.24e-07,22;DOID:169,8.48e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0009568!1.42e-09!2;UBERON:0002216!1.42e-09!2;UBERON:0002209!1.42e-09!2;UBERON:0002213!1.42e-09!2;UBERON:0004267!1.42e-09!2;UBERON:0006444!1.42e-09!2;UBERON:0001995!1.42e-09!2;UBERON:0004715!1.42e-09!2;UBERON:0001468!1.42e-09!2;UBERON:0001130!1.42e-09!2;UBERON:0001066!1.42e-09!2;UBERON:0004905!5.20e-08!5;UBERON:0000982!5.20e-08!5;UBERON:0004770!5.20e-08!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0002242;2.89e-12;3!UBERON:0000013;7.01e-08;5!UBERON:0002410;7.01e-08;5!UBERON:0011135;7.01e-08;5!UBERON:0002216;7.01e-08;5!UBERON:0005284;7.01e-08;5!UBERON:0011134;7.01e-08;5!UBERON:0002209;7.01e-08;5!UBERON:0002213;7.01e-08;5!UBERON:0007844;7.01e-08;5!UBERON:0011138;7.01e-08;5!UBERON:0001130;7.01e-08;5!UBERON:0001066;7.01e-08;5!UBERON:0001468;7.01e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002242,3.24e-12,3;UBERON:0003068,3.24e-12,3;UBERON:0002328,3.24e-12,3;UBERON:0004880,3.24e-12,3;UBERON:0000013,6.55e-08,5;UBERON:0002410,6.55e-08,5;UBERON:0005284,7.01e-08,5;UBERON:0011135,7.49e-08,5;UBERON:0002216,7.49e-08,5;UBERON:0011134,7.49e-08,5;UBERON:0002209,7.49e-08,5;UBERON:0002213,7.49e-08,5;UBERON:0005856,7.49e-08,5;UBERON:0005866,7.49e-08,5;UBERON:0005863,7.49e-08,5;UBERON:0007844,7.49e-08,5;UBERON:0011138,7.49e-08,5;UBERON:0001130,7.49e-08,5;UBERON:0001066,7.49e-08,5;UBERON:0001468,7.49e-08,5 | |||
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| ||
|short_description=p@chr5:17604288..17604293,+ | |short_description=p@chr5:17604288..17604293,+ | ||
}} | }} |
Latest revision as of 13:30, 30 July 2015
Short description: | p@chr5:17604288..17604293, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:17604288..17604293, + |
Coexpression cluster: | C99_hairy_mycosis_submaxillary_salivary_cord_kidney_parotid |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the brain vasculature | 2.89e-12 | 3 |
nucleus pulposus cell of intervertebral disc | 3.24e-12 | 3 |
Ontology term | p-value | n |
---|---|---|
nucleus pulposus | 3.24e-12 | 3 |
axial mesoderm | 3.24e-12 | 3 |
notochord | 3.24e-12 | 3 |
chordamesoderm | 3.24e-12 | 3 |
sympathetic nervous system | 6.55e-08 | 5 |
autonomic nervous system | 6.55e-08 | 5 |
brain vasculature | 7.01e-08 | 5 |
intervertebral cartilage | 7.49e-08 | 5 |
symphysis | 7.49e-08 | 5 |
nonsynovial joint | 7.49e-08 | 5 |
fibrous joint | 7.49e-08 | 5 |
cartilaginous joint | 7.49e-08 | 5 |
developing mesenchymal condensation | 7.49e-08 | 5 |
pre-cartilage condensation | 7.49e-08 | 5 |
cartilaginous condensation | 7.49e-08 | 5 |
cartilage element | 7.49e-08 | 5 |
post-cranial axial skeletal system | 7.49e-08 | 5 |
vertebral column | 7.49e-08 | 5 |
intervertebral disk | 7.49e-08 | 5 |
intervertebral joint | 7.49e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 5.24e-07 | 22 |
germ cell cancer | 5.24e-07 | 22 |
neuroendocrine tumor | 8.48e-07 | 6 |