FFCP PHASE1:Hg19::chr2:30523559..30523563,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:30523559..30523563,- | |||
|coexpression_cluster_id=C423 | |||
|description=CAGE_peak_at_chr2:30523559..30523563,- | |description=CAGE_peak_at_chr2:30523559..30523563,- | ||
|id=chr2:30523559..30523563,- | |id=chr2:30523559..30523563,- | ||
|ontology_enrichment_celltype=CL:0002620!7.67e-24!23;CL:0000057!1.73e-19!75;CL:0000055!1.95e-15!180;CL:0002580!6.62e-14!3;CL:0002615!1.36e-13!3;CL:0000136!4.30e-13!15;CL:0002617!1.10e-09!2;CL:0000128!6.61e-09!7;CL:0000126!6.61e-09!7;CL:0000127!6.61e-09!7;CL:0002453!6.61e-09!7;CL:0002334!6.63e-09!12;CL:0002371!1.50e-07!591 | |ontology_enrichment_celltype=CL:0002620!7.67e-24!23;CL:0000057!1.73e-19!75;CL:0000055!1.95e-15!180;CL:0002580!6.62e-14!3;CL:0002615!1.36e-13!3;CL:0000136!4.30e-13!15;CL:0002617!1.10e-09!2;CL:0000128!6.61e-09!7;CL:0000126!6.61e-09!7;CL:0000127!6.61e-09!7;CL:0002453!6.61e-09!7;CL:0002334!6.63e-09!12;CL:0002371!1.50e-07!591 | ||
|ontology_enrichment_celltype_v019=CL:0002580;3.18e-25;3!CL:0002615;1.29e-24;3!CL:0000136;1.98e-22;13!CL:0002616;1.18e-19;1!CL:0002334;3.30e-14;12!CL:0002620;5.92e-13;23!CL:0002617;2.37e-10;2!CL:0002579;3.06e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002580,2.99e-25,3;CL:0002615,1.45e-24,3;CL:0002616,1.30e-19,1;CL:0000136,1.85e-19,15;CL:0002334,3.30e-14,12;CL:0002620,5.57e-13,23;CL:0000057,2.28e-11,76;CL:0002617,2.49e-10,2;CL:0002579,3.16e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!1.50e-13!5;DOID:450!1.50e-13!5;DOID:66!1.50e-13!5;DOID:423!1.50e-13!5;DOID:0080000!1.50e-13!5;DOID:11722!1.50e-13!5 | |ontology_enrichment_disease=DOID:17!1.50e-13!5;DOID:450!1.50e-13!5;DOID:66!1.50e-13!5;DOID:423!1.50e-13!5;DOID:0080000!1.50e-13!5;DOID:11722!1.50e-13!5 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003688!6.69e-18!6;UBERON:0002358!6.69e-18!6;UBERON:0003684!6.69e-18!6;UBERON:0001178!6.69e-18!6;UBERON:0002199!4.92e-15!45;UBERON:0002416!4.92e-15!45;UBERON:0002097!7.03e-15!40;UBERON:0000310!9.27e-11!10;UBERON:0001443!9.52e-10!11;UBERON:0000475!4.63e-09!365;UBERON:0004457!8.79e-09!12;UBERON:0000042!8.79e-09!12;UBERON:0003102!1.96e-07!95 | |ontology_enrichment_uberon=UBERON:0003688!6.69e-18!6;UBERON:0002358!6.69e-18!6;UBERON:0003684!6.69e-18!6;UBERON:0001178!6.69e-18!6;UBERON:0002199!4.92e-15!45;UBERON:0002416!4.92e-15!45;UBERON:0002097!7.03e-15!40;UBERON:0000310!9.27e-11!10;UBERON:0001443!9.52e-10!11;UBERON:0000475!4.63e-09!365;UBERON:0004457!8.79e-09!12;UBERON:0000042!8.79e-09!12;UBERON:0003102!1.96e-07!95 | ||
|ontology_enrichment_uberon_v019=UBERON:0003688;3.18e-27;6!UBERON:0002358;3.18e-27;6!UBERON:0003684;3.18e-27;6!UBERON:0001178;3.18e-27;6!UBERON:0004457;2.08e-18;9!UBERON:0000042;2.08e-18;9!UBERON:0000310;5.55e-17;10!UBERON:0001443;1.68e-15;11!UBERON:0005406;1.64e-10;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,3.64e-27,6;UBERON:0002358,3.64e-27,6;UBERON:0003684,3.64e-27,6;UBERON:0001178,3.64e-27,6;UBERON:0000310,5.55e-17,10;UBERON:0001443,1.68e-15,11;UBERON:0004457,5.91e-14,12;UBERON:0000042,5.91e-14,12;UBERON:0005406,1.72e-10,2;UBERON:0002097,2.05e-07,41 | |||
|phase1_expression=0.726713517082227,2.35510576280081,0.704772020479856,1.0007329835313,1.34088328328186,5.23403114460221,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0.573673241497627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0.717558542755448,0.427114777637135,0,1.80054657650641,0.206105058476878,5.41045134095821,0.744467425326359,0.675105328965065,0.584622030967192,3.78650661366172,0.368199594569197,0,4.26011511019937,0.403008392910561,0,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.415941723061614,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.744323423456331,14.732349435654,2.52594084989766,0.896974044789907,1.02341449813341,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178064071293475,0,0,0,0,0,0.94443704049192,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0.137539436597234,0.415440338029185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0.726713517082227,2.35510576280081,0.704772020479856,1.0007329835313,1.34088328328186,5.23403114460221,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0.573673241497627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0.717558542755448,0.427114777637135,0,1.80054657650641,0.206105058476878,5.41045134095821,0.744467425326359,0.675105328965065,0.584622030967192,3.78650661366172,0.368199594569197,0,4.26011511019937,0.403008392910561,0,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.415941723061614,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.744323423456331,14.732349435654,2.52594084989766,0.896974044789907,1.02341449813341,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178064071293475,0,0,0,0,0,0.94443704049192,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0.137539436597234,0.415440338029185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr2:30523559..30523563,- | |short_description=p@chr2:30523559..30523563,- | ||
}} | }} |
Latest revision as of 09:32, 29 July 2015
Short description: | p@chr2:30523559..30523563, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:30523559..30523563, - |
Coexpression cluster: | C423_Preadipocyte_Adipocyte_Chondrocyte_tenocyte_Osteoblast_Synoviocyte_Fibroblast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte of the breast | 2.99e-25 | 3 |
adipocyte of omentum tissue | 1.45e-24 | 3 |
perirenal adipocyte cell | 1.30e-19 | 1 |
fat cell | 1.85e-19 | 15 |
preadipocyte | 3.30e-14 | 12 |
skin fibroblast | 5.57e-13 | 23 |
fibroblast | 2.28e-11 | 76 |
adipocyte of breast | 2.49e-10 | 2 |
omentum preadipocyte | 3.16e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
omentum | 3.64e-27 | 6 |
peritoneum | 3.64e-27 | 6 |
abdominal cavity | 3.64e-27 | 6 |
visceral peritoneum | 3.64e-27 | 6 |
breast | 5.55e-17 | 10 |
chest | 1.68e-15 | 11 |
cavity lining | 5.91e-14 | 12 |
serous membrane | 5.91e-14 | 12 |
perirenal fat | 1.72e-10 | 2 |
skin of body | 2.05e-07 | 41 |