FFCP PHASE1:Hg19::chr12:58212533..58212539,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10677 | |EntrezGene=10677 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14188 | |HGNC=14188 | ||
|TSSclassifier=strong | |||
|UniProt=F8VVU1 | |UniProt=F8VVU1 | ||
|association_with_transcript=-46bp_to_ENST00000549994_5end | |association_with_transcript=-46bp_to_ENST00000549994_5end | ||
|cluster_id=chr12:58212533..58212539,- | |||
|coexpression_cluster_id=C171 | |coexpression_cluster_id=C171 | ||
|description=CAGE_peak_2_at_AVIL_5end | |description=CAGE_peak_2_at_AVIL_5end | ||
|id=chr12:58212533..58212539,- | |id=chr12:58212533..58212539,- | ||
|ontology_enrichment_celltype=CL:0000242!1.82e-14!2 | |ontology_enrichment_celltype=CL:0000242!1.82e-14!2 | ||
|ontology_enrichment_celltype_v019=CL:0000123;8.77e-67;2!CL:0000242;8.77e-67;2!CL:0000312;1.70e-27;5!CL:0000240;4.11e-23;6!CL:0000311;4.11e-23;6!CL:0000079;4.11e-23;6!CL:0000237;4.11e-23;6!CL:0000362;8.71e-16;9!CL:0002159;1.61e-10;14!CL:0000095;5.25e-08;17!CL:0000333;7.01e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,7.41e-67,2;CL:0000312,1.59e-27,5;CL:0000240,3.88e-23,6;CL:0000311,3.88e-23,6;CL:0000079,3.88e-23,6;CL:0000237,3.88e-23,6;CL:0000036,3.88e-23,6;CL:0000357,3.88e-23,6;CL:0000114,3.88e-23,6;CL:0000362,8.39e-16,9;CL:0002159,1.57e-10,14;CL:0000095,5.16e-08,17;CL:0000123,5.16e-08,17;CL:0000333,1.09e-07,41 | |||
|ontology_enrichment_development_v019=UBERON:0004140;7.05e-34;1!CL:0000357;4.11e-23;6!CL:0000114;4.11e-23;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:171;3.36e-14;10!DOID:3095;5.49e-07;22!DOID:2994;5.49e-07;22!DOID:169;8.97e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:171,3.25e-14,10;DOID:3095,5.40e-07,22;DOID:2994,5.40e-07,22;DOID:169,8.48e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0001282!9.44e-08!1;UBERON:0009842!9.44e-08!1;UBERON:0003704!9.44e-08!1;UBERON:0001171!9.44e-08!1;UBERON:0001172!9.44e-08!1;UBERON:0002581!2.47e-07!1;UBERON:0001882!2.63e-07!1;UBERON:0005403!2.63e-07!1;UBERON:0002363!2.98e-07!1;UBERON:0007647!2.98e-07!1;UBERON:0010115!2.98e-07!1;UBERON:0000369!5.55e-07!4;UBERON:0002435!5.55e-07!4;UBERON:0000204!5.55e-07!4;UBERON:0010082!5.55e-07!4 | |ontology_enrichment_uberon=UBERON:0001282!9.44e-08!1;UBERON:0009842!9.44e-08!1;UBERON:0003704!9.44e-08!1;UBERON:0001171!9.44e-08!1;UBERON:0001172!9.44e-08!1;UBERON:0002581!2.47e-07!1;UBERON:0001882!2.63e-07!1;UBERON:0005403!2.63e-07!1;UBERON:0002363!2.98e-07!1;UBERON:0007647!2.98e-07!1;UBERON:0010115!2.98e-07!1;UBERON:0000369!5.55e-07!4;UBERON:0002435!5.55e-07!4;UBERON:0000204!5.55e-07!4;UBERON:0010082!5.55e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0001003;6.93e-10;15!UBERON:0007376;6.93e-10;15!UBERON:0002346;1.27e-09;4!UBERON:0000923;1.27e-09;4!UBERON:0010316;1.27e-09;4!UBERON:0005291;1.27e-09;4!UBERON:0002050;5.92e-08;5!UBERON:0005423;5.92e-08;5!UBERON:0000013;7.01e-08;5!UBERON:0002410;7.01e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001003,6.78e-10,15;UBERON:0007376,6.78e-10,15;UBERON:0007383,6.78e-10,15;UBERON:0000013,6.55e-08,5;UBERON:0002410,6.55e-08,5 | |||
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|short_description=p2@AVIL | |short_description=p2@AVIL | ||
}} | }} |
Latest revision as of 16:50, 19 September 2015
Short description: | p2@AVIL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_AVIL_5end |
Coexpression cluster: | C171_merkel_neuroblastoma_pineal_retinoblastoma_carcinoid_small_eye |
Association with transcript: | -46bp_to_ENST00000549994_5end |
EntrezGene: | AVIL |
HGNC: | 14188 |
UniProt: | F8VVU1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 7.41e-67 | 2 |
keratinocyte | 1.59e-27 | 5 |
stratified squamous epithelial cell | 3.88e-23 | 6 |
keratin accumulating cell | 3.88e-23 | 6 |
stratified epithelial cell | 3.88e-23 | 6 |
keratinizing barrier epithelial cell | 3.88e-23 | 6 |
epithelial fate stem cell | 3.88e-23 | 6 |
stratified epithelial stem cell | 3.88e-23 | 6 |
surface ectodermal cell | 3.88e-23 | 6 |
epidermal cell | 8.39e-16 | 9 |
general ecto-epithelial cell | 1.57e-10 | 14 |
neuron associated cell | 5.16e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 5.16e-08 | 17 |
migratory neural crest cell | 1.09e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
skin epidermis | 6.78e-10 | 15 |
outer epithelium | 6.78e-10 | 15 |
enveloping layer of ectoderm | 6.78e-10 | 15 |
sympathetic nervous system | 6.55e-08 | 5 |
autonomic nervous system | 6.55e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 3.25e-14 | 10 |
germ cell and embryonal cancer | 5.40e-07 | 22 |
germ cell cancer | 5.40e-07 | 22 |
neuroendocrine tumor | 8.48e-07 | 6 |