FFCP PHASE1:Hg19::chr1:197881592..197881617,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56956 | |EntrezGene=56956 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14222 | |HGNC=14222 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000475727_5end | |association_with_transcript=0bp_to_ENST00000475727_5end | ||
|cluster_id=chr1:197881592..197881617,+ | |||
|coexpression_cluster_id=C680 | |coexpression_cluster_id=C680 | ||
|description=CAGE_peak_6_at_LHX9_5end | |description=CAGE_peak_6_at_LHX9_5end | ||
|id=chr1:197881592..197881617,+ | |id=chr1:197881592..197881617,+ | ||
|ontology_enrichment_celltype=CL:0002620!1.11e-23!23;CL:0000242!6.02e-10!2;CL:0000057!9.14e-08!75 | |ontology_enrichment_celltype=CL:0002620!1.11e-23!23;CL:0000242!6.02e-10!2;CL:0000057!9.14e-08!75 | ||
|ontology_enrichment_celltype_v019=CL:0000123;2.01e-40;2!CL:0000242;2.01e-40;2!CL:0000312;7.51e-17;5!CL:0000240;3.25e-14;6!CL:0000311;3.25e-14;6!CL:0000079;3.25e-14;6!CL:0000237;3.25e-14;6!CL:0000047;3.52e-11;2!CL:0002535;3.52e-11;2!CL:0000362;8.46e-10;9!CL:0002620;2.16e-08;23!CL:0002178;4.52e-08;3!CL:0002319;3.12e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,1.34e-40,2;CL:0000312,6.40e-17,5;CL:0000240,2.85e-14,6;CL:0000311,2.85e-14,6;CL:0000079,2.85e-14,6;CL:0000237,2.85e-14,6;CL:0000036,2.85e-14,6;CL:0000357,2.85e-14,6;CL:0000114,2.85e-14,6;CL:0002535,4.09e-11,2;CL:0000362,7.74e-10,9;CL:0002620,2.19e-08,23;CL:0002178,4.52e-08,3;CL:0002319,3.02e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000357;3.25e-14;6!CL:0000114;3.25e-14;6 | |||
|ontology_enrichment_disease=DOID:17!3.19e-14!5;DOID:450!3.19e-14!5;DOID:66!3.19e-14!5;DOID:423!3.19e-14!5;DOID:0080000!3.19e-14!5;DOID:11722!3.19e-14!5 | |ontology_enrichment_disease=DOID:17!3.19e-14!5;DOID:450!3.19e-14!5;DOID:66!3.19e-14!5;DOID:423!3.19e-14!5;DOID:0080000!3.19e-14!5;DOID:11722!3.19e-14!5 | ||
|ontology_enrichment_disease_v019=DOID:17;7.51e-17;5!DOID:450;7.51e-17;5!DOID:66;7.51e-17;5!DOID:423;7.51e-17;5!DOID:0080000;7.51e-17;5!DOID:11722;7.51e-17;5!DOID:154;2.02e-11;2!DOID:4236;2.02e-11;2 | |||
|ontology_enrichment_disease_v019_2=DOID:17,8.82e-17,5;DOID:450,8.82e-17,5;DOID:66,8.82e-17,5;DOID:423,8.82e-17,5;DOID:0080000,8.82e-17,5;DOID:11722,8.82e-17,5;DOID:154,2.02e-11,2;DOID:4236,2.02e-11,2 | |||
|ontology_enrichment_uberon=UBERON:0002097!1.76e-17!40;UBERON:0002199!3.54e-15!45;UBERON:0002416!3.54e-15!45 | |ontology_enrichment_uberon=UBERON:0002097!1.76e-17!40;UBERON:0002199!3.54e-15!45;UBERON:0002416!3.54e-15!45 | ||
|ontology_enrichment_uberon_v019=UBERON:0006955;3.52e-11;2!UBERON:0004801;3.52e-11;2!UBERON:0002199;5.09e-09;46!UBERON:0002416;5.09e-09;46!UBERON:0002097;3.78e-08;41!UBERON:0003102;4.34e-08;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,3.11e-12,41;UBERON:0006955,4.09e-11,2;UBERON:0004801,4.09e-11,2;UBERON:0002199,6.44e-11,46;UBERON:0002416,6.44e-11,46 | |||
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| ||
|short_description=p6@LHX9 | |short_description=p6@LHX9 | ||
}} | }} |
Latest revision as of 13:20, 19 September 2015
Short description: | p6@LHX9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LHX9_5end |
Coexpression cluster: | C680_gastric_signet_pineal_tubular_medulloblastoma_small_anaplastic |
Association with transcript: | 0bp_to_ENST00000475727_5end |
EntrezGene: | LHX9 |
HGNC: | 14222 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 1.34e-40 | 2 |
keratinocyte | 6.40e-17 | 5 |
stratified squamous epithelial cell | 2.85e-14 | 6 |
keratin accumulating cell | 2.85e-14 | 6 |
stratified epithelial cell | 2.85e-14 | 6 |
keratinizing barrier epithelial cell | 2.85e-14 | 6 |
epithelial fate stem cell | 2.85e-14 | 6 |
stratified epithelial stem cell | 2.85e-14 | 6 |
surface ectodermal cell | 2.85e-14 | 6 |
epithelial cell of cervix | 4.09e-11 | 2 |
epidermal cell | 7.74e-10 | 9 |
skin fibroblast | 2.19e-08 | 23 |
epithelial cell of stomach | 4.52e-08 | 3 |
neural cell | 3.02e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
skin of body | 3.11e-12 | 41 |
uterine epithelium | 4.09e-11 | 2 |
cervix epithelium | 4.09e-11 | 2 |
integument | 6.44e-11 | 46 |
integumental system | 6.44e-11 | 46 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 8.82e-17 | 5 |
myotonic disease | 8.82e-17 | 5 |
muscle tissue disease | 8.82e-17 | 5 |
myopathy | 8.82e-17 | 5 |
muscular disease | 8.82e-17 | 5 |
myotonic dystrophy | 8.82e-17 | 5 |
mixed cell type cancer | 2.02e-11 | 2 |
carcinosarcoma | 2.02e-11 | 2 |