FF:475-3I5: Difference between revisions

Latest revision as of 19:17, 4 June 2020

Name:	whole body, embryo E17
Species:	Mouse (Mus musculus)
Library ID:	CNhs10517
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	whole body
dev stage	17 days embryo
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004691

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10517		CAGE		DRX009149		DRR010023

Accession ID Mm9

Library id		BAM		CTSS
CNhs10517		DRZ001448		DRZ002831

Accession ID Mm10

Library id		BAM		CTSS
CNhs10517		DRZ012798		DRZ014181

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs10517

0	0
1	0.243
10	0
100	0.176
1000	0.176
1001	-0.0633
1002	0.0447
1003	0.335
1004	0.136
1005	0
1006	0.269
1007	-0.0202
1008	0
1009	0.111
101	-0.0674
1010	0
1011	0.246
1012	0
1013	-0.0375
1014	0.481
1015	0.232
1016	0.274
1017	0.0968
1018	0.243
1019	0
102	0
1020	0
1021	0
1022	0.0265
1023	0
1024	0.161
1025	0.176
1026	0.118
1027	0.0968
1028	0
1029	-0.0179
103	0.721
1030	0
1031	0.421
1032	0.0374
1033	0.0303
1034	0
1035	0
1036	-0.0723
1037	0
1038	-0.018
1039	-0.00831
104	0
1040	0.135
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10517

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0306
MA0003.1	MA0003.1	0.728
MA0004.1	MA0004.1	0.196
MA0006.1	MA0006.1	0.493
MA0007.1	MA0007.1	0.107
MA0009.1	MA0009.1	0.64
MA0014.1	MA0014.1	0.207
MA0017.1	MA0017.1	2.14197e-10
MA0018.2	MA0018.2	0.53
MA0019.1	MA0019.1	0.228
MA0024.1	MA0024.1	0.398
MA0025.1	MA0025.1	0.663
MA0027.1	MA0027.1	0.963
MA0028.1	MA0028.1	7.79861e-6
MA0029.1	MA0029.1	0.595
MA0030.1	MA0030.1	0.924
MA0031.1	MA0031.1	0.249
MA0035.2	MA0035.2	0.00787
MA0038.1	MA0038.1	0.0527
MA0039.2	MA0039.2	0.906
MA0040.1	MA0040.1	0.733
MA0041.1	MA0041.1	0.292
MA0042.1	MA0042.1	0.641
MA0043.1	MA0043.1	0.79
MA0046.1	MA0046.1	1.34826e-14
MA0047.2	MA0047.2	0.0035
MA0048.1	MA0048.1	0.0089
MA0050.1	MA0050.1	1.3185e-9
MA0051.1	MA0051.1	1.02954e-5
MA0052.1	MA0052.1	1.61395e-9
MA0055.1	MA0055.1	2.5934e-4
MA0057.1	MA0057.1	0.752
MA0058.1	MA0058.1	0.0923
MA0059.1	MA0059.1	0.0213
MA0060.1	MA0060.1	0.0475
MA0061.1	MA0061.1	0.048
MA0062.2	MA0062.2	2.15916e-11
MA0065.2	MA0065.2	8.43857e-5
MA0066.1	MA0066.1	0.0771
MA0067.1	MA0067.1	0.216
MA0068.1	MA0068.1	0.405
MA0069.1	MA0069.1	0.432
MA0070.1	MA0070.1	0.162
MA0071.1	MA0071.1	0.0113
MA0072.1	MA0072.1	0.0127
MA0073.1	MA0073.1	0.961
MA0074.1	MA0074.1	0.313
MA0076.1	MA0076.1	6.90427e-6
MA0077.1	MA0077.1	0.153
MA0078.1	MA0078.1	0.763
MA0079.2	MA0079.2	0.0414
MA0080.2	MA0080.2	4.01137e-10
MA0081.1	MA0081.1	0.0936
MA0083.1	MA0083.1	8.21615e-4
MA0084.1	MA0084.1	0.66
MA0087.1	MA0087.1	0.65
MA0088.1	MA0088.1	0.0966
MA0090.1	MA0090.1	0.595
MA0091.1	MA0091.1	0.77
MA0092.1	MA0092.1	0.775
MA0093.1	MA0093.1	0.188
MA0099.2	MA0099.2	0.477
MA0100.1	MA0100.1	0.0302
MA0101.1	MA0101.1	0.00421
MA0102.2	MA0102.2	0.833
MA0103.1	MA0103.1	0.532
MA0104.2	MA0104.2	0.399
MA0105.1	MA0105.1	0.0322
MA0106.1	MA0106.1	0.155
MA0107.1	MA0107.1	0.0324
MA0108.2	MA0108.2	3.99907e-27
MA0111.1	MA0111.1	0.892
MA0112.2	MA0112.2	0.00144
MA0113.1	MA0113.1	0.0874
MA0114.1	MA0114.1	2.35562e-8
MA0115.1	MA0115.1	1.41215e-7
MA0116.1	MA0116.1	0.192
MA0117.1	MA0117.1	0.345
MA0119.1	MA0119.1	0.309
MA0122.1	MA0122.1	0.957
MA0124.1	MA0124.1	0.773
MA0125.1	MA0125.1	0.00349
MA0131.1	MA0131.1	0.311
MA0135.1	MA0135.1	0.0145
MA0136.1	MA0136.1	6.93788e-15
MA0137.2	MA0137.2	4.89415e-5
MA0138.2	MA0138.2	4.14627e-4
MA0139.1	MA0139.1	0.235
MA0140.1	MA0140.1	6.87162e-4
MA0141.1	MA0141.1	7.67928e-5
MA0142.1	MA0142.1	0.366
MA0143.1	MA0143.1	0.345
MA0144.1	MA0144.1	0.0161
MA0145.1	MA0145.1	0.999
MA0146.1	MA0146.1	0.047
MA0147.1	MA0147.1	0.372
MA0148.1	MA0148.1	5.23807e-4
MA0149.1	MA0149.1	0.00321
MA0150.1	MA0150.1	0.00377
MA0152.1	MA0152.1	0.279
MA0153.1	MA0153.1	5.60157e-15
MA0154.1	MA0154.1	0.2
MA0155.1	MA0155.1	0.503
MA0156.1	MA0156.1	1.5869e-12
MA0157.1	MA0157.1	0.287
MA0159.1	MA0159.1	0.00412
MA0160.1	MA0160.1	0.00161
MA0162.1	MA0162.1	0.577
MA0163.1	MA0163.1	0.00482
MA0164.1	MA0164.1	0.472
MA0258.1	MA0258.1	0.0189
MA0259.1	MA0259.1	0.524

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10517

Novel motif	Logo	P-value
1	1	0.196
10	10	0.0344
100	100	0.531
101	101	0.364
102	102	0.843
103	103	0.0144
104	104	0.65
105	105	0.971
106	106	0.424
107	107	0.928
108	108	0.464
109	109	0.0502
11	11	0.0611
110	110	0.0492
111	111	0.00339
112	112	0.00498
113	113	0.974
114	114	0.134
115	115	0.915
116	116	0.646
117	117	0.00129
118	118	0.137
119	119	0.286
12	12	0.839
120	120	0.825
121	121	0.434
122	122	0.549
123	123	0.124
124	124	0.58
125	125	0.118
126	126	0.0157
127	127	0.35
128	128	0.536
129	129	0.144
13	13	1.6065e-5
130	130	0.976
131	131	0.882
132	132	0.805
133	133	0.38
134	134	0.412
135	135	0.785
136	136	0.122
137	137	0.363
138	138	0.713
139	139	0.0499
14	14	0.703
140	140	0.376
141	141	0.599
142	142	0.0358
143	143	0.264
144	144	0.755
145	145	0.0195
146	146	0.953
147	147	0.653
148	148	0.292
149	149	0.63
15	15	0.0141
150	150	0.282
151	151	0.54
152	152	0.495
153	153	0.681
154	154	0.313
155	155	0.128
156	156	2.73725e-6
157	157	0.691
158	158	0.0108
159	159	0.681
160	160	0.852
161	161	0.0746
162	162	0.742
163	163	0.35
164	164	0.0012
165	165	0.0372
166	166	0.779
167	167	0.00963
168	168	0.263
169	169	0.0387
17	17	0.232
18	18	0.695
19	19	0.436
2	2	0.0836
20	20	0.0167
21	21	0.719
22	22	0.413
23	23	0.556
24	24	0.231
25	25	0.357
26	26	0.0024
27	27	0.654
28	28	0.235
29	29	0.00573
3	3	0.0423
30	30	0.126
31	31	0.958
32	32	0.4
33	33	0.116
34	34	0.581
35	35	0.23
36	36	0.0846
37	37	0.0167
38	38	0.679
39	39	0.508
4	4	0.846
40	40	0.225
41	41	0.483
42	42	0.268
43	43	0.171
44	44	0.21
45	45	0.6
46	46	0.279
47	47	0.305
48	48	0.117
49	49	0.0723
5	5	0.0464
50	50	0.902
51	51	0.695
52	52	0.706
53	53	0.421
54	54	0.85
55	55	0.815
56	56	0.915
57	57	0.506
58	58	0.41
59	59	0.703
6	6	0.891
60	60	0.325
61	61	0.0767
62	62	0.268
63	63	0.587
64	64	0.772
65	65	0.79
66	66	0.779
67	67	0.957
68	68	0.807
69	69	0.979
7	7	0.0733
70	70	0.0524
71	71	0.0206
72	72	0.373
73	73	0.0242
74	74	0.498
75	75	0.0203
76	76	0.015
77	77	0.806
78	78	0.0231
79	79	0.698
8	8	0.0777
80	80	0.515
81	81	0.939
82	82	0.264
83	83	0.237
84	84	0.751
85	85	0.433
86	86	0.327
87	87	0.605
88	88	0.361
89	89	0.677
9	9	0.944
90	90	0.0192
91	91	0.606
92	92	0.321
93	93	0.0459
94	94	0.567
95	95	0.0251
96	96	0.592
97	97	0.863
98	98	0.817
99	99	0.741

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10517

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011365 mouse whole body- embryo E17 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000300 (mouse embryonic day 17 sample)
0011365 (mouse whole body- embryo E17 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004691
+|accession_numbers=CAGE;DRX009149;DRR010023;DRZ001448;DRZ002831;DRZ012798;DRZ014181
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000999,FF:0000292,FF:0000004,FF:0000300,FF:0011365
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:55631042..55631102,-!p1@Neurod6!1.66!44.72!Neurod6;;chr12:34642510..34642530,+!p1@Twist1!1.54!104.17!Twist1;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.48!36.97!Pou3f3;;chr11:98190918..98190951,-!p1@Neurod2!1.48!29.48!Neurod2;;chr1:136186574..136186592,+!p1@Myog!1.47!28.48!Myog;;chr11:94981424..94981439,+!p1@Dlx3!1.44!30.23!Dlx3;;chr16:91270004..91270023,+!p1@Olig1!1.43!29.73!Olig1;;chr17:48015839..48015915,-!p3@Foxp4!1.41!28.98!Foxp4;;chr12:30213247..30213333,+!p1@Myt1l!1.39!23.73!Myt1l;;chr11:121380640..121380655,-!p1@Zfp750!1.38!37.22!Zfp750;;chr3:95032091..95032183,-!p1@Mllt11!1.33!168.12!Mllt11;;chr1:179374784..179374800,+!p2@Zfp238!1.33!23.73!Zfp238;;chr2:79296783..79296801,-!p1@Neurod1!1.31!19.24!Neurod1;;chr9:91260594..91260612,-!p1@Zic1!1.30!18.74!Zic1;;chr5:77543897..77543911,-!p2@Hopx!1.28!33.97!Hopx;;chr3:99057269..99057306,+!p1@Tbx15!1.28!21.73!Tbx15;;chr6:6832076..6832092,-!p1@Dlx5!1.27!20.73!Dlx5;;chr12:74147689..74147711,-!p1@Six1!1.26!37.22!Six1;;chr7:116154364..116154444,+!p1@Tub!1.26!29.48!Tub;;chr2:71384802..71384815,-!p1@Dlx2!1.26!20.98!Dlx2;;chr9:31720843..31720888,-!p1@Barx2!1.25!18.49!Barx2;;chr12:28027561..28027591,-!p1@Sox11!1.24!104.42!Sox11;;chr13:72766250..72766273,+!p1@Irx2!1.24!25.48!Irx2;;chr19:5560600..5560617,-!p1@Ovol1!1.24!19.74!Ovol1;;chr2:61642631..61642684,+!p1@Tbr1!1.24!16.24!Tbr1;;chr2:38206580..38206600,+!p2@Lhx2!1.22!19.49!Lhx2;;chr17:44951553..44951586,-!p2@Runx2!1.21!16.99!Runx2;;chr9:91260616..91260653,-!p2@Zic1!1.20!14.99!Zic1;;chr4:135129538..135129558,-!p1@Grhl3!1.19!21.73!Grhl3;;chr2:120365588..120365602,-!p2@Zfp106!1.18!23.73!Zfp106;;chr11:121380594..121380609,-!p2@Zfp750!1.17!23.98!Zfp750;;chr1:57028125..57028149,-!p2@Satb2!1.17!13.74!Satb2;;chr15:102197405..102197454,-!p1@Sp7!1.17!13.74!Sp7;;chr13:72766279..72766296,+!p2@Irx2!1.16!19.98!Irx2;;chr2:38206744..38206766,+!p1@Lhx2!1.16!16.24!Lhx2;;chr16:25801993..25802014,+!p1@Trp63!1.16!13.49!Trp63;;chr2:65683890..65683907,+!p1@Csrnp3!1.15!25.23!Csrnp3;;chr3:34548909..34548927,+!p1@Sox2!1.15!21.98!Sox2;;chr13:40829137..40829205,-!p1@Tfap2a!1.15!14.74!Tfap2a;;chr13:83643159..83643226,+!p3@Mef2c!1.15!13.24!Mef2c;;chr19:55969923..55969944,+!p6@Tcf7l2!1.15!13.24!Tcf7l2;;chrX:108009761..108009788,+!p1@Pou3f4!1.15!12.99!Pou3f4;;chrX:90531838..90531861,+!p1@Arx!1.14!16.24!Arx;;chr13:55932591..55932622,-!p1@Pitx1!1.14!15.49!Pitx1;;chr14:49287186..49287225,-!p1@Otx2!1.14!12.74!Otx2;;chr16:91225808..91225824,+!p1@Olig2!1.14!12.74!Olig2;;chr7:6649134..6649167,-!p1@Zim1!1.13!67.20!Zim1;;chr11:116196664..116196679,-!p1@Foxj1!1.13!19.24!Foxj1;;chr6:6831950..6831985,-!p2@Dlx5!1.13!13.74!Dlx5;;chr15:76352832..76352900,-!p1@Scrt1!1.12!12.24!Scrt1;;chr1:165243591..165243625,-!p2@Prrx1!1.08!16.74!Prrx1;;chr4:154335024..154335039,+!p1@Hes5!1.08!13.24!Hes5;;chr7:53631837..53631850,+!p1@Myod1!1.08!10.99!Myod1;;chr5:98609885..98609900,+!p1@Prdm8!1.07!10.74!Prdm8;;chr13:99124189..99124205,+!p1@Foxd1!1.06!16.24!Foxd1;;chr7:30088977..30089002,+!p2@Dpf1!1.06!14.74!Dpf1;;chr8:87297280..87297326,-!p2@Nfix!1.05!24.23!Nfix;;chr11:121380611..121380625,-!p3@Zfp750!1.05!12.49!Zfp750;;chr10:12810631..12810649,+!p1@Plagl1!1.03!256.06!Plagl1;;chr12:109242266..109242295,-!p1@Bcl11b!1.03!83.44!Bcl11b;;chr12:57796615..57796687,+!p1@Pax9!1.03!9.74!Pax9;;chr2:146047829..146047847,+!p1@Insm1!1.02!17.24!Insm1;;chr12:30219426..30219506,+!p2@Myt1l!1.02!9.49!Myt1l;;chr17:86087592..86087615,-!p1@Six2!1.02!9.49!Six2;;chr17:44951431..44951445,-!p3@Runx2!1.01!9.24!Runx2;;chr19:19185671..19185693,-!p1@Rorb!1.00!21.73!Rorb;;chr12:54349410..54349461,+!p1@Npas3!0.99!10.74!Npas3;;chr14:122874619..122874634,+!p1@Zic2!0.99!8.74!Zic2;;chr3:127336052..127336058,+!p1@Neurog2!0.98!8.49!Neurog2;;chr3:101814061..101814094,+!p1@Nhlh2!0.98!8.49!Nhlh2;;chr6:6831928..6831949,-!p3@Dlx5!0.98!8.49!Dlx5;;chr1:140739014..140739032,-!p1@Lhx9!0.97!10.74!Lhx9;;chr8:12395603..12395621,+!p1@Sox1!0.97!8.24!Sox1;;chr10:106931775..106931798,-!p1@Myf6!0.97!8.24!Myf6;;chr17:25707623..25707639,-!p1@Sox8!0.96!35.72!Sox8;;chr10:44178521..44178557,-!p1@Prdm1!0.96!14.74!Prdm1;;chr7:17647736..17647772,-!p1@Hif3a!0.95!28.73!Hif3a;;chr13:72101178..72101203,-!p1@Irx1!0.95!12.49!Irx1;;chr4:124334894..124334899,+!p1@Pou3f1!0.95!10.49!Pou3f1;;chr2:172375081..172375105,+!p1@Tfap2c!0.95!7.99!Tfap2c;;chr5:38215819..38215823,-!p1@Msx1!0.94!20.73!Msx1;;chr15:35225845..35225867,+!p1@Osr2!0.94!19.74!Osr2;;chr6:70906450..70906454,+!p1@Foxi3!0.94!7.74!Foxi3;;chr4:46356509..46356527,+!p1@Foxe1!0.94!7.74!Foxe1;;chr2:103143336..103143367,-!p1@Ehf!0.93!12.49!Ehf;;chrX:58146612..58146615,-!p1@Sox3!0.93!7.49!Sox3;;chr10:126778916..126778974,-!p1@Gli1!0.92!16.74!Gli1;;chr10:86956396..86956411,-!p1@Ascl1!0.92!11.49!Ascl1;;chr11:96880072..96880079,+!p1@Sp6!0.92!7.24!Sp6;;chr18:66098702..66098742,-!p1@Rax!0.92!7.24!Rax;;chr9:43013917..43013968,-!p1@Pou2f3!0.92!7.24!Pou2f3;;chr15:102087737..102087801,-!p3@Rarg!0.91!11.99!Rarg;;chr1:57029281..57029326,-!p1@Satb2!0.91!11.24!Satb2;;chr13:53568104..53568156,-!p1@Msx2!0.90!10.49!Msx2;;chr16:18587076..18587106,-!p1@Tbx1!0.90!9.99!Tbx1;;chr14:118636214..118636235,-!p1@Sox21!0.90!8.49!Sox21;;chr1:165243379..165243402,-!p3@Prrx1!0.89!10.24!Prrx1;;chr13:72101161..72101177,-!p2@Irx1!0.89!9.49!Irx1;;chr5:77543935..77543947,-!p4@Hopx!0.89!6.74!Hopx;;chr4:119960301..119960359,-!p1@Foxo6!0.88!22.48!Foxo6;;chr2:9800207..9800234,-!p1@Gata3!0.88!20.98!Gata3;;chr4:13670499..13670526,+!p2@Runx1t1!0.88!15.24!Runx1t1;;chr4:87452200..87452229,-!p2@Mllt3!0.88!14.49!Mllt3;;chr3:17954233..17954249,+!p1@Bhlhe22!0.87!6.50!Bhlhe22;;chr2:61642743..61642758,+!p2@Tbr1!0.87!6.50!Tbr1;;chr4:87452180..87452196,-!p3@Mllt3!0.86!12.74!Mllt3;;chr10:102491405..102491416,-!p1@Alx1!0.86!6.25!Alx1;;chr15:102196745..102196769,-!p2@Sp7!0.86!6.25!Sp7;;chr8:94881733..94881790,+!p1@Irx5!0.85!12.49!Irx5;;chr5:138199361..138199441,+!p2@Tsc22d4!0.85!11.99!Tsc22d4;;chr7:30092993..30093076,+!p1@Dpf1!0.85!10.74!Dpf1;;chr2:91864449..91864492,-!p3@Creb3l1!0.85!10.24!Creb3l1;;chr3:128916868..128916890,+!p1@Pitx2!0.85!8.49!Pitx2;;chr4:150482563..150482655,-!p2@Camta1!0.84!22.23!Camta1;;chr12:34642682..34642753,+!p2@Twist1!0.84!16.49!Twist1;;chr6:128250380..128250442,-!p2@Tead4!0.84!7.74!Tead4;;chr7:144505957..144505972,-!p2@Ebf3!0.84!7.49!Ebf3;;chr1:19199236..19199258,+!p1@Tfap2b!0.84!6.00!Tfap2b;;chr2:71367142..71367167,+!p2@Dlx1!0.84!6.00!Dlx1;;chr17:26978409..26978442,-!p1@Nkx2-5!0.84!6.00!Nkx2-5;;chr11:84339016..84339044,-!p1@Lhx1!0.84!6.00!Lhx1;;chr11:21901608..21901634,-!p1@Otx1!0.84!6.00!Otx1;;chr8:87297878..87297935,-!p3@Nfix!0.83!13.49!Nfix;;chr1:93698030..93698064,+!p1@Twist2!0.83!11.99!Twist2;;chr12:37835120..37835133,+!p2@Meox2!0.83!8.49!Meox2;;chr15:76352677..76352737,-!p3@Scrt1!0.83!5.75!Scrt1;;chr1:169548377..169548430,+!p1@Rxrg!0.83!5.75!Rxrg;;chr10:62562530..62562540,+!p1@Atoh7!0.83!5.75!Atoh7;;chr3:34548946..34548972,+!p2@Sox2!0.82!6.25!Sox2;;chr14:67853425..67853454,+!p1@Ebf2!0.81!7.99!Ebf2;;chr11:106128936..106128955,-!p4@Smarcd2!0.81!6.50!Smarcd2;;chr4:150503457..150503498,-!p3@Camta1!0.81!6.25!Camta1;;chr1:173987720..173987729,-!p1@Nhlh1!0.81!5.50!Nhlh1;;chr8:87297330..87297365,-!p5@Nfix!0.81!5.50!Nfix;;chr14:67853632..67853674,+!p3@Ebf2!0.80!6.50!Ebf2;;chr2:73109983..73109996,+!p1@Sp9!0.80!5.25!Sp9;;chr19:5560570..5560582,-!p2@Ovol1!0.80!5.25!Ovol1;;chr2:151907338..151907360,+!p2@Scrt2!0.80!5.25!Scrt2;;chr19:55969946..55969973,+!p8@Tcf7l2!0.80!5.25!Tcf7l2;;chr12:37835141..37835194,+!p1@Meox2!0.79!16.99!Meox2;;chr2:91864300..91864379,-!p2@Creb3l1!0.79!15.74!Creb3l1;;chr14:56443806..56443848,+!p1@Nfatc4!0.79!10.99!Nfatc4;;chr19:59533221..59533271,+!p1@Emx2!0.79!6.50!Emx2;;chr13:48758276..48758291,+!p1@Barx1!0.78!5.00!Barx1;;chr12:50483639..50483654,+!p1@Foxg1!0.78!5.00!Foxg1;;chr6:30908793..30908815,-!p1@Klf14!0.78!5.00!Klf14;;chr17:86020156..86020183,+!p1@Six3!0.78!5.00!Six3;;chr8:59799772..59799789,+!p1@Hand2!0.77!14.99!Hand2;;chr10:44178493..44178520,-!p3@Prdm1!0.77!6.99!Prdm1;;chr18:80909801..80909819,-!p1@Nfatc1!0.76!30.98!Nfatc1;;chr1:93698068..93698085,+!p2@Twist2!0.76!5.75!Twist2;;chr11:96143666..96143725,+!p1@Hoxb8!0.76!5.50!Hoxb8;;chr9:118387300..118387317,+!p1@Eomes!0.76!4.75!Eomes;;chr13:40826961..40827001,-!p4@Tfap2a!0.76!4.75!Tfap2a;;chr1:57028157..57028173,-!p3@Satb2!0.76!4.75!Satb2;;chr6:6831986..6832007,-!p4@Dlx5!0.76!4.75!Dlx5;;chr2:71384458..71384526,-!p2@Dlx2!0.76!4.75!Dlx2;;chr4:22415443..22415506,-!p1@Pou3f2!0.76!4.75!Pou3f2;;chr4:122673278..122673336,+!p1@Mycl1!0.75!15.99!Mycl1;;chr7:144506077..144506128,-!p1@Ebf3!0.75!11.49!Ebf3;;chr13:117099847..117099907,-!p1@Isl1!0.75!8.99!Isl1;;chr14:104867201..104867258,-!p1@Pou4f1!0.75!6.74!Pou4f1;;chr13:29045321..29045337,-!p2@Sox4!0.75!6.50!Sox4;;chr8:90328310..90328362,-!p3@Zfp423!0.75!5.50!Zfp423;;chr2:167363692..167363710,+!p1@Snai1!0.74!60.70!Snai1;;chr7:25292331..25292421,+!p1@Zfp428!0.74!35.22!Zfp428;;chr15:76352740..76352781,-!p5@Scrt1!0.74!4.50!Scrt1;;chr17:86020510..86020589,+!p3@Six3!0.74!4.50!Six3;;chrX:55283799..55283813,+!p1@Zic3!0.74!4.50!Zic3;;chr2:105509045..105509071,+!p1@Pax6!0.74!4.50!Pax6;;chr1:19199095..19199114,+!p5@Tfap2b!0.74!4.50!Tfap2b;;chr2:28771056..28771092,-!p1@Barhl1!0.74!4.50!Barhl1;;chr3:128902837..128902861,+!p3@Pitx2!0.74!4.50!Pitx2;;chr7:119885539..119885574,+!p3@Tead1!0.74!4.50!Tead1;;chr13:31717548..31717596,+!p1@Foxf2!0.72!8.99!Foxf2;;chr7:91558472..91558512,-!p2@Arnt2!0.72!6.25!Arnt2;;chr13:55932624..55932641,-!p2@Pitx1!0.72!4.25!Pitx1;;chr5:24104540..24104584,-!p7@Smarcd3!0.72!4.25!Smarcd3;;chr2:73110004..73110016,+!p2@Sp9!0.72!4.25!Sp9;;chr19:55968967..55968991,+!p7@Tcf7l2!0.72!4.25!Tcf7l2;;chr1:57028556..57028583,-!p5@Satb2!0.72!4.25!Satb2;;chr2:151907546..151907561,+!p1@Scrt2!0.72!4.25!Scrt2;;chr2:103264213..103264233,+!p1@Elf5!0.72!4.25!Elf5;;chr14:99697871..99697934,+!p1@Klf5!0.71!92.93!Klf5;;chr9:71743854..71743909,-!p1@Tcf12!0.71!37.22!Tcf12;;chr7:25372631..25372684,-!p1@Zfp575!0.71!13.74!Zfp575;;chr9:87626083..87626108,-!p1@Tbx18!0.71!9.74!Tbx18;;chr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!Zfp740;;chr6:92041399..92041417,+!p2@Nr2c2!0.31!5.50!Nr2c2;;chr7:4947697..4947718,-!p2@Zfp579!0.31!4.75!Zfp579;;chr3:30500978..30501018,+!p1@Mynn!0.31!4.25!Mynn;;chr2:77357622..77357704,-!p1@Zfp385b!0.31!4.25!Zfp385b;;chr18:80348151..80348181,-!p2@Adnp2!0.31!4.00!Adnp2;;chr4:58956447..58956510,+!p1@Zkscan16!0.31!3.25!Zkscan16;;chr4:97444120..97444141,+!p13@Nfia!0.31!2.75!Nfia;;chr10:67375368..67375433,-!p1@Zfp365!0.31!2.50!Zfp365;;chr7:19946535..19946550,+!p3@Ppp1r13l!0.31!2.00!Ppp1r13l;;chr9:106355684..106355744,+!p5@Pcbp4!0.31!2.00!Pcbp4;;chr2:115890294..115890334,-!p9@Meis2!0.31!1.75!Meis2;;chr2:115888250..115888298,-!p10@Meis2!0.31!1.50!Meis2;;chr8:94325273..94325288,-!p5@Irx3!0.31!1.50!Irx3;;chr10:44178575..44178590,-!p5@Prdm1!0.31!1.50!Prdm1;;chr10:80889867..80889924,-!p1@Nfic!0.30!50.21!Nfic;;chr1:64167972..64168026,-!p1@Klf7!0.30!42.22!Klf7;;chr6:117791192..117791269,+!p1@Zfp637!0.30!28.73!Zfp637;;chr10:67599319..67599360,-!p2@Arid5b!0.30!19.24!Arid5b;;chr9:121669118..121669179,+!p1@Zfp651!0.30!18.74!Zfp651;;chr19:26679654..26679675,+!p1@Smarca2!0.30!16.49!Smarca2;;chr4:128483534..128483613,-!p1@Zfp362!0.30!11.99!Zfp362;;chr2:130120884..130120972,+!p1@Ebf4!0.30!9.99!Ebf4;;chr18:69504195..69504213,+!p4@Tcf4!0.30!7.49!Tcf4;;chr7:30836380..30836430,-!p1@Zfp14!0.30!6.25!Zfp14;;chr9:48644037..48644067,-!p2@Zbtb16!0.30!3.75!Zbtb16;;chr14:52935788..52935817,-!p2@Sall2!0.30!3.25!Sall2;;chr11:85646341..85646352,+!p3@Tbx2!0.30!2.75!Tbx2;;chr1:120949925..120949947,-!p4@Gli2!0.30!2.75!Gli2;;chr7:4946900..4946921,-!p5@Zfp579!0.30!2.25!Zfp579;;chr15:37162796..37162828,+!p1@Grhl2!0.30!2.25!Grhl2;;chr1:179372625..179372654,+!p4@Zfp238!0.30!2.00!Zfp238;;chr8:79423672..79423727,+!p2@Nr3c2!0.30!1.50!Nr3c2;;chr15:102865131..102865151,+!p2@Hoxc4!0.30!1.25!Hoxc4;;chr3:130813557..130813582,+!p5@Lef1!0.30!1.25!Lef1;;chr2:74543397..74543435,+!p2@Hoxd8!0.30!1.00!Hoxd8;;chr3:128902878..128902893,+!p6@Pitx2!0.30!1.00!Pitx2;;chr4:13678514..13678539,+!p14@Runx1t1!0.30!1.00!Runx1t1;;chr4:115612528..115612533,-!p1@Dmbx1!0.30!1.00!Dmbx1;;chr4:84321317..84321332,-!p4@Bnc2!0.30!1.00!Bnc2;;chr4:148178459..148178482,+!p4@Casz1!0.30!1.00!Casz1;;chr4:87452167..87452178,-!p8@Mllt3!0.30!1.00!Mllt3;;chr3:34548845..34548856,+!p4@Sox2!0.30!1.00!Sox2;;chr4:107107224..107107259,+!p2@Glis1!0.30!1.00!Glis1;;chr3:66785181..66785199,-!p2@Shox2!0.30!1.00!Shox2;;chr4:13678684..13678704,+!p17@Runx1t1!0.30!1.00!Runx1t1;;chr13:95645555..95645566,+!p3@Otp!0.30!1.00!Otp;;chr13:95645580..95645598,+!p1@Otp!0.30!1.00!Otp;;chr15:37163065..37163092,+!p4@Grhl2!0.30!1.00!Grhl2;;chr14:13178241..13178254,-!p4@Fezf2!0.30!1.00!Fezf2;;chr12:85910771..85910785,+!p1@Vsx2!0.30!1.00!Vsx2;;chr15:102196702..102196713,-!p6@Sp7!0.30!1.00!Sp7;;chr15:35225873..35225889,+!p2@Osr2!0.30!1.00!Osr2;;chr13:83643136..83643158,+!p7@Mef2c!0.30!1.00!Mef2c;;chr13:53568081..53568094,-!p3@Msx2!0.30!1.00!Msx2;;chr12:57636220..57636236,-!p3@Nkx2-1!0.30!1.00!Nkx2-1;;chr13:44936077..44936096,+!p9@Jarid2!0.30!1.00!Jarid2;;chr13:73398004..73398017,+!p2@Irx4!0.30!1.00!Irx4;;chr13:55937432..55937460,-!p4@Pitx1!0.30!1.00!Pitx1;;chr8:12395874..12395885,+!p2@Sox1!0.30!1.00!Sox1;;chr9:96632719..96632745,-!p7@Zbtb38!0.30!1.00!Zbtb38;;chr9:87626109..87626120,-!p3@Tbx18!0.30!1.00!Tbx18;;chr9:91273412..91273420,+!p7@Zic4!0.30!1.00!Zic4;;chr5:24104452..24104472,-!p11@Smarcd3!0.30!1.00!Smarcd3;;chr5:67490284..67490302,-!p1@Phox2b!0.30!1.00!Phox2b;;chr6:97941770..97941784,+!p4@Mitf!0.30!1.00!Mitf;;chr6:97879817..97879857,+!p2@Mitf!0.30!1.00!Mitf;;chr5:122345353..122345358,-!p5@Cux2!0.30!1.00!Cux2;;chr5:140019843..140019858,+!p2@Uncx!0.30!1.00!Uncx;;chr7:116093986..116093999,+!p4@Tub!0.30!1.00!Tub;;chr6:83020355..83020371,-!p1@Tlx2!0.30!1.00!Tlx2;;chr5:42155788..42155800,-!p1@Nkx3-2!0.30!1.00!Nkx3-2;;chr1:191994700..191994711,-!p4@Prox1!0.30!1.00!Prox1;;chr1:57028111..57028122,-!p9@Satb2!0.30!1.00!Satb2;;chr1:136186545..136186554,+!p2@Myog!0.30!1.00!Myog;;chr2:30700830..30700843,+!p4@Prrx2!0.30!1.00!Prrx2;;chr19:59533595..59533628,+!p6@Emx2!0.30!1.00!Emx2;;chr19:59244875..59244895,-!p2@Vax1!0.30!1.00!Vax1;;chr1:122499088..122499099,+!p2@En1!0.30!1.00!En1;;chr1:169619683..169619694,+!p1@Lmx1a!0.30!1.00!Lmx1a;;chr2:168427120..168427138,-!p4@Nfatc2!0.30!1.00!Nfatc2;;chr19:55972753..55972764,+!p33@Tcf7l2!0.30!1.00!Tcf7l2;;chr19:55967842..55967878,+!p13@Tcf7l2!0.30!1.00!Tcf7l2;;chr19:55969438..55969450,+!p53@Tcf7l2!0.30!1.00!Tcf7l2;;chr1:169528491..169528505,+!p4@Rxrg!0.30!1.00!Rxrg;;chr1:6720216..6720232,+!p1@St18!0.30!1.00!St18;;chr18:81183755..81183761,-!p1@Sall3!0.30!1.00!Sall3;;chr17:26978521..26978536,-!p2@Nkx2-5!0.30!1.00!Nkx2-5;;chr15:95485240..95485257,-!p1@Dbx2!0.30!1.00!Dbx2;;chr17:86020137..86020149,+!p5@Six3!0.30!1.00!Six3;;chr18:14130594..14130600,-!p7@Zfp521!0.30!1.00!Zfp521;;chr19:46222739..46222745,-!p2@Pitx3!0.30!1.00!Pitx3;;chr17:48015995..48016037,-!p12@Foxp4!0.30!1.00!Foxp4;;chr11:98826178..98826197,+!p7@Rara!0.30!1.00!Rara;;chr10:12844757..12844771,+!p2@Plagl1!0.30!1.00!Plagl1;;chr11:9498113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93309740..93309811,-!p1@Hes6!0.26!32.97!Hes6;;chrX:70587953..70587968,+!p1@Zfp275!0.26!17.24!Zfp275;;chr2:165213745..165213815,-!p1@Zfp334!0.26!13.99!Zfp334;;chr15:81977802..81977828,+!p2@Srebf2!0.26!13.49!Srebf2;;chr1:74634538..74634615,-!p1@Zfp142!0.26!13.24!Zfp142;;chr4:97444590..97444607,+!p6@Nfia!0.26!11.24!Nfia;;chr16:14705961..14705978,+!p2@Snai2!0.26!6.99!Snai2;;chr11:62602904..62602945,-!p1@Zfp286!0.26!6.99!Zfp286;;chr13:31650185..31650201,+!p1@Foxq1!0.26!5.00!Foxq1;;chr17:69732364..69732405,+!p2@Zfp161!0.26!5.00!Zfp161;;chrX:45245644..45245666,-!p2@Smarca1!0.26!4.50!Smarca1;;chr10:41996471..41996487,-!p4@Foxo3!0.26!4.00!Foxo3;;chr5:22939771..22939797,+!p4@Mll5!0.26!2.75!Mll5;;chr18:69753108..69753139,+!p8@Tcf4!0.26!2.50!Tcf4;;chr7:56136402..56136420,-!p3@E2f8!0.26!2.25!E2f8;;chr6:72185210..72185228,-!p3@Atoh8!0.26!2.00!Atoh8;;chr6:83391584..83391595,-!p2@Tet3!0.26!2.00!Tet3;;chr13:31650026..31650045,+!p2@Foxq1!0.26!2.00!Foxq1;;chr12:3891810..3891829,+!p2@Dnmt3a!0.26!1.75!Dnmt3a;;chr8:124984566..124984595,-!p1@Snai3!0.26!1.75!Snai3;;chr10:62328079..62328093,-!p5@Tet1!0.26!1.50!Tet1;;chr10:126779021..126779032,-!p2@Gli1!0.26!1.25!Gli1;;chr7:25292223..25292234,+!p7@Zfp428!0.26!1.25!Zfp428;;chr15:102865048..102865073,+!p3@Hoxc4!0.26!1.25!Hoxc4;;chr5:24107903..24107917,-!p6@Smarcd3!0.26!1.25!Smarcd3;;chr4:133309775..133309784,-!p15@Arid1a!0.26!1.25!Arid1a;;chr3:90046995..90047031,-!p2@Creb3l4!0.26!1.25!Creb3l4;;chr2:77654815..77654872,-!p2@Zfp385b!0.26!1.25!Zfp385b;;chr15:81575472..81575481,+!p4@Zc3h7b!0.26!1.25!Zc3h7b;;chr1:136456767..136456790,+!p2@Kdm5b!0.25!33.22!Kdm5b;;chr4:97444297..97444323,+!p2@Nfia!0.25!24.48!Nfia;;chr16:4594683..4594735,+!p2@Glis2!0.25!19.98!Glis2;;chr1:33871252..33871313,-!p2@Zfp451!0.25!18.74!Zfp451;;chr2:181100089..181100119,+!p1@Zgpat!0.25!14.49!Zgpat;;chr11:50641183..50641244,-!p1@Zfp354c!0.25!11.99!Zfp354c;;chr7:24919167..24919203,+!p1@Zfp235!0.25!10.99!Zfp235;;chr19:28085628..28085671,-!p1@Rfx3!0.25!10.49!Rfx3;;chr14:65977498..65977528,+!p1@Zfp395!0.25!9.99!Zfp395;;chr16:92697560..92697592,-!p2@Runx1!0.25!9.49!Runx1;;chr14:65977324..65977372,+!p2@Zfp395!0.25!8.49!Zfp395;;chr3:135354476..135354528,-!p2@Nfkb1!0.25!8.24!Nfkb1;;chr2:152758901..152758925,-!p1@Foxs1!0.25!6.50!Foxs1;;chr4:149862477..149862553,+!p3@Rere!0.25!5.00!Rere;;chr11:101646566..101646603,-!p1@Etv4!0.25!4.50!Etv4;;chr6:14851287..14851342,+!p1@Foxp2!0.25!4.50!Foxp2;;chr4:149611311..149611317,+!p2@Eno1!0.25!4.00!Eno1;;chr5:134790276..134790294,-!p7@Gtf2i!0.25!2.75!Gtf2i;;chr11:5761979..5761992,+!p2@Aebp1!0.25!2.50!Aebp1;;chr17:87153440..87153451,+!p4@Epas1!0.25!2.50!Epas1;;chr15:50721640..50721654,-!p7@Trps1!0.25!1.75!Trps1;;chr4:87679181..87679192,-!p10@Mllt3!0.25!1.50!Mllt3;;chr3:94668075..94668087,+!p6@Pogz!0.25!1.50!Pogz;;chr17:48015645..48015689,-!p9@Foxp4!0.25!1.25!Foxp4;;chr6:14851250..14851277,+!p4@Foxp2!0.25!1.25!Foxp2;;chr6:92041372..92041383,+!p6@Nr2c2!0.25!1.25!Nr2c2;;chr7:17642018..17642045,-!p4@Hif3a!0.25!1.00!Hif3a;;chr8:123640090..123640101,+!p2@Foxc2!0.25!1.00!Foxc2;;chr11:44431626..44431637,+!p10@Ebf1!0.25!1.00!Ebf1;;chr16:30065419..30065437,+!p1@Hes1!0.24!83.19!Hes1;;chr7:134170235..134170294,-!p1@Maz!0.24!43.72!Maz;;chr7:26035739..26035757,-!p1@Erf!0.24!38.22!Erf;;chr2:44968512..44968530,-!p1@Zeb2!0.24!33.97!Zeb2;;chr15:81575487..81575561,+!p1@Zc3h7b!0.24!33.72!Zc3h7b;;
+|ffid_belonging_in_development=FF:0000294
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |has_quality=
 |id=FF:475-3I5
-|is_a=EFO:0002091;;FF:0000004;;FF:0000103;;FF:0011365
+|is_a=EFO:0002091;;FF:0011365
+|is_obsolete=
+|library_id=CNhs10517
+|library_id_phase_based=2:CNhs10517
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;475
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;475
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E17.CNhs10517.475-3I5.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E17.CNhs10517.475-3I5.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E17.CNhs10517.475-3I5.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E17.CNhs10517.475-3I5.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E17.CNhs10517.475-3I5.mm9.nobarcode.rdna.fa.gz
 |name=whole body, embryo E17
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10517,LSID649,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=0.0582042379648785,0,0,0,0,0,0.178980039515686,0,0,0,0,0.354784001227427,0,0,0,0,0,0,-0.0159117922890027,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.257557357746121,0,0,0,0,0.0815539114734762,-0.0729098481710317,0.165500922519348,-0.0770239133494823,0.400184771464118,0.740558169382928,0.0968441960560167,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0,0,0,0,0,0,0.044850941273255,-0.00978522276147542,0.540615633888594,-0.0042748059424986,0,0,0.153697966714669,0.0290874864006108,0,0,0.11191788761518,0.0993432899150266,0.233108491368589,-0.0788315948399074,0,0,0,0,0,0,0.110572067490695,0.327471294113814,0.272919688110632,0,0,0.175981558593572,0,0
 |rna_box=3
 |rna_catalog_number=
@@ Line 57: / Line 76: @@
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 76: / Line 96: @@
 |sample_tissue=whole body
 |top_motifs=HOX{A4,D4}:2.68569107211;NKX2-3_NKX2-5:2.55736200275;TBP:2.32951102147;MYOD1:2.30375529371;ZNF148:2.23144087114;TFAP4:2.16868216543;LHX3,4:2.16643522216;SMAD1..7,9:2.08138674102;EP300:2.04394080423;VSX1,2:1.93282657623;HMX1:1.91462650712;LEF1_TCF7_TCF7L1,2:1.85323421896;TFCP2:1.80488591949;NKX3-2:1.78212765743;GLI1..3:1.77729332567;ESR1:1.73803220282;MAZ:1.73773887965;PATZ1:1.70869986244;TGIF1:1.69573676233;GTF2I:1.69092665135;TFAP2{A,C}:1.67708137463;RREB1:1.63545460541;MYFfamily:1.61174194701;HOX{A5,B5}:1.58406998915;NANOG:1.56547922005;MAFB:1.54679858982;MZF1:1.52212700371;XCPE1{core}:1.51977862057;SOX{8,9,10}:1.5159654057;TBX4,5:1.4846203676;KLF4:1.43798453665;NHLH1,2:1.43055545245;T:1.41018349147;SP1:1.30023624957;PAX5:1.28388265298;MTF1:1.27341348513;PRDM1:1.26568770542;PRRX1,2:1.25352938978;HIC1:1.24871630303;ZNF238:1.24159751596;ZNF423:1.23568411323;PPARG:1.21430524939;EN1,2:1.19549819391;GTF2A1,2:1.18837826061;TOPORS:1.18509984788;MED-1{core}:1.14943540208;HAND1,2:1.14892217482;POU5F1:1.13170143425;REST:1.12906505493;FOXL1:1.11542136744;TAL1_TCF{3,4,12}:1.11469384426;ZIC1..3:1.10665695993;FOS_FOS{B,L1}_JUN{B,D}:1.078195146;ATF2:1.07798293529;ZBTB6:1.07737777143;GFI1B:1.07162478685;MTE{core}:1.04390083216;TFAP2B:1.03674304599;EGR1..3:1.03609204182;GCM1,2:1.01408569945;SOX2:1.01154909249;NKX2-1,4:1.00868261943;MEF2{A,B,C,D}:1.00128238137;ALX1:0.997125735133;LMO2:0.976492872008;RFX2..5_RFXANK_RFXAP:0.971025072725;BREu{core}:0.951249773624;EBF1:0.868217456185;POU6F1:0.849924091578;ADNP_IRX_SIX_ZHX:0.839405087081;ATF6:0.829794325232;TLX1..3_NFIC{dimer}:0.815340469772;TEAD1:0.790667648071;ZFP161:0.787775321524;HIF1A:0.781853251546;SOX5:0.761245714818;HOXA9_MEIS1:0.754892898835;IKZF1:0.736648821572;RFX1:0.736567579381;HES1:0.724704941662;PAX1,9:0.720572858967;TFDP1:0.715685035853;FOSL2:0.712462996483;TLX2:0.705409400647;PAX2:0.671631217492;TP53:0.668382436487;OCT4_SOX2{dimer}:0.661010208808;UFEwm:0.632327870657;SNAI1..3:0.628764451978;GFI1:0.625231921669;POU2F1..3:0.594510463046;AHR_ARNT_ARNT2:0.589856958085;FOXP3:0.562546389054;CRX:0.537999967687;CDC5L:0.520609837959;CUX2:0.517118415739;RXRA_VDR{dimer}:0.500421929583;NFATC1..3:0.487573473824;PAX6:0.463799301415;FOXM1:0.446051829919;SPZ1:0.433853532928;HSF1,2:0.431450692837;NR3C1:0.419192414055;SRF:0.413359280494;ZEB1:0.403884221948;HMGA1,2:0.378799896481;ZNF384:0.373987041466;NFE2L2:0.372929776738;GATA4:0.313918890353;DBP:0.300811685671;MYBL2:0.286808872327;NFE2L1:0.253322040887;POU3F1..4:0.225161117918;JUN:0.195012153572;FOXQ1:0.183995593076;SOX17:0.166211920348;PAX4:0.152062031825;RBPJ:0.112849138372;IKZF2:0.0987136402802;FOXA2:0.0418340446791;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0331973210569;NKX6-1,2:0.0314137494615;FOX{F1,F2,J1}:0.021143416032;PITX1..3:0.0209400051872;RORA:0.00600310770537;ZNF143:-0.0126391636251;BACH2:-0.0400508329885;NANOG{mouse}:-0.0426439883084;NFE2:-0.0467209596886;FOXN1:-0.0763305035385;bHLH_family:-0.0934174599822;HLF:-0.130276631385;NR5A1,2:-0.137712024458;NRF1:-0.195176484059;RXR{A,B,G}:-0.210654342965;POU1F1:-0.219678866509;PAX8:-0.224760791666;HBP1_HMGB_SSRP1_UBTF:-0.266083329327;NFIX:-0.280872870914;GZF1:-0.310496966396;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.323209981856;NKX2-2,8:-0.338612128001;RUNX1..3:-0.346608785582;NFKB1_REL_RELA:-0.359799999423;NFY{A,B,C}:-0.411425648207;PBX1:-0.428339641763;SPIB:-0.434825630321;NR1H4:-0.459290173593;EVI1:-0.473645816773;ONECUT1,2:-0.484201264973;ATF5_CREB3:-0.502365199483;FOX{I1,J2}:-0.52526014969;E2F1..5:-0.547903127463;SPI1:-0.56298482944;STAT2,4,6:-0.586921628762;CEBPA,B_DDIT3:-0.608628305221;MYB:-0.612894052749;STAT5{A,B}:-0.640098285708;ALX4:-0.647716429468;FOX{D1,D2}:-0.686138955155;BPTF:-0.734758009289;NKX3-1:-0.736319367236;ETS1,2:-0.75975990109;TEF:-0.763716425727;HNF4A_NR2F1,2:-0.77456273727;AIRE:-0.832969666159;FOXD3:-0.834088590866;FOXP1:-0.858480837273;HNF1A:-0.862245966836;CREB1:-0.867769540971;SREBF1,2:-0.869641948776;ATF4:-0.873359394194;NFIL3:-0.873909663536;IRF7:-0.888315671246;DMAP1_NCOR{1,2}_SMARC:-0.913054470374;AR:-0.918501340411;GATA6:-0.951601437774;ESRRA:-0.968095613284;FOXO1,3,4:-0.998486495493;IRF1,2:-1.08746881907;ELF1,2,4:-1.16426446057;YY1:-1.17503639464;ELK1,4_GABP{A,B1}:-1.1751415719;ARID5B:-1.29606726052;STAT1,3:-1.35339722579;CDX1,2,4:-1.44183473779;NR6A1:-1.53816732902;PDX1:-1.61374068992;ZBTB16:-1.71748275825
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:475-3I5;search_select_hide=table117:475-3I5
 }}

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FF:475-3I5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:17, 4 June 2020

CNhs10517

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0