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{{UBERON
{{UBERON
|id=UBERON:0001886
|alt_id=UBERON:FMA_61934-MA_0000823-ZFA_0001443
|name=choroid plexus
|anatomical_img_id=FMA:61934
|namespace=
|def="A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier[?]. Fringe of the tela choroidea of the brain ventricles[MP]. The choroid plexus is the area on the ventricles of the brain where cerebrospinal fluid (CSF) is produced by modified ependymal cells[WP]." [MP:0000820, Wikipedia:Choroid_plexus, ZFIN:curator]
|xref=BTO:0000258;;EFO:0001915;;FMA:61934;;GAID:607;;http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Gray708.svg/200px-Gray708.svg.png;;MA:0000823;;MESH:A.08.186.211.276.298;;ncithesaurus:Choroid_Plexus;;SCTID:264450003;;TAO:0001443;;VHOG:0001377;;XAO:0004176;;ZFA:0001443
|is_a=UBERON:0003947;;UBERON:0005284;;UBERON:0005629
|synonym="chorioid plexus" EXACT [FMA:61934];;"plexus choroideus" EXACT [FMA:61934, FMA:TA]
|comment=TODO - check relationship to ventricle. Check subclass - ZFA says vasculature. Note that FMA:61934 (choroid plexus of cerebral hemisphere) has exact synonym 'choroid plexus' but it is not clear that this belongs here, as the fourth ventricle is not in the cerbral hemisphere
|comment=TODO - check relationship to ventricle. Check subclass - ZFA says vasculature. Note that FMA:61934 (choroid plexus of cerebral hemisphere) has exact synonym 'choroid plexus' but it is not clear that this belongs here, as the fourth ventricle is not in the cerbral hemisphere
|alt_id=UBERON:FMA_61934-MA_0000823-ZFA_0001443
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier[?]. Fringe of the tela choroidea of the brain ventricles[MP]. The choroid plexus is the area on the ventricles of the brain where cerebrospinal fluid (CSF) is produced by modified ependymal cells[WP]." [MP:0000820, Wikipedia:Choroid_plexus, ZFIN:curator]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001886
|is_a=UBERON:0003947 ;;UBERON:0005629 ;;UBERON:0006876
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0004086
|name=choroid plexus
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|namespace=FANTOM
|is_obsolete=
|obo_creation_date=
|part_of=UBERON:0004086;;UBERON:0005283
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier.[TAO]" xsd:string
|subset=uberon_slim;;vertebrate_core
|synonym="chorioid plexus" EXACT [FMA:61934];;"plexus choroideus" EXACT [FMA:61934, FMA:TA];;"plexus choroideus" RELATED LATIN [Wikipedia:Choroid_plexus]
|union_of=
|xref=BTO:0000258;;EFO:0001915;;FMA:61934;;GAID:607;;http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray708.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Gray708.svg/200px-Gray708.svg.png;;MA:0000823;;MESH:A.08.186.211.276.298;;ncithesaurus:Choroid_Plexus;;SCTID:264450003;;TAO:0001443;;VHOG:0001377;;XAO:0004176;;ZFA:0001443
}}
}}

Latest revision as of 17:22, 12 September 2014

Name:choroid plexus
Namespace:FANTOM
Definition:"A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier[?]. Fringe of the tela choroidea of the brain ventricles[MP]. The choroid plexus is the area on the ventricles of the brain where cerebrospinal fluid (CSF) is produced by modified ependymal cells[WP]." [MP:0000820, Wikipedia:Choroid_plexus, ZFIN:curator]
Xrefs:
links:

BTO:0000258
EFO:0001915
FMA:61934
GAID:607
[1]
[ 200px-Gray708.svg.png 200px-Gray708.svg.png]
MA:0000823
MESH:A.08.186.211.276.298
ncithesaurus:Choroid_Plexus
SCTID:264450003
TAO:0001443
VHOG:0001377
XAO:0004176

ZFA:0001443
Synonyms: "chorioid plexus" EXACT [FMA:61934]
"plexus choroideus" EXACT [FMA:61934, FMA:TA]
"plexus choroideus" RELATED LATIN [Wikipedia:Choroid_plexus]
Comments:TODO - check relationship to ventricle. Check subclass - ZFA says vasculature. Note that FMA:61934 (choroid plexus of cerebral hemisphere) has exact synonym 'choroid plexus' but it is not clear that this belongs here, as the fourth ventricle is not in the cerbral hemisphere
Alt_id: UBERON:FMA_61934-MA_0000823-ZFA_0001443
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003947(brain ventricle/choroid plexus),UBERON:0005629(vascular plexus),UBERON:0006876(vasculature of organ)
part_of:UBERON:0004086(brain ventricle),UBERON:0005283(tela choroidea)



Children

is a:UBERON:0002307 (choroid plexus of lateral ventricle)
part of:CL:0002549 (fibroblast of choroid plexus)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001886 (choroid plexus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE1:Hg19::chr1:201708474..201708479,+#_5feb28e53a801ae731658e080ab88cdep58@NAV1
3.29e-195FFCP PHASE2:Hg19::chr1:201708474..201708479,+#_5feb28e53a801ae731658e080ab88cdep58@NAV1
3.29e-195FFCP PHASE1:Hg19::chr1:201708485..201708494,+#_5feb28e53a801ae731658e080ab88cdep55@NAV1
3.29e-195FFCP PHASE2:Hg19::chr1:201708485..201708494,+#_5feb28e53a801ae731658e080ab88cdep55@NAV1
8.99e-131FFCP PHASE1:Hg19::chr8:24997361..24997368,-#_14547b60e2e79219ccfea59296e1f8f7p@chr8:24997361..24997368, -
8.99e-131FFCP PHASE2:Hg19::chr8:24997361..24997368,-#_14547b60e2e79219ccfea59296e1f8f7p@chr8:24997361..24997368, -
3.96e-66FFCP PHASE1:Hg19::chr17:75471711..75471726,+#_02dc7d22416faf70dc75ccfcc5bf9952p73@SEPT9
3.96e-66FFCP PHASE2:Hg19::chr17:75471711..75471726,+#_02dc7d22416faf70dc75ccfcc5bf9952p73@SEPT9
3.96e-66FFCP PHASE1:Hg19::chr3:146517344..146517356,+#_02dc7d22416faf70dc75ccfcc5bf9952p@chr3:146517344..146517356, +
3.96e-66FFCP PHASE2:Hg19::chr3:146517344..146517356,+#_02dc7d22416faf70dc75ccfcc5bf9952p@chr3:146517344..146517356, +
4.77e-57FFCP PHASE2:Hg19::chr12:15941738..15941768,+#_777319b7e74c4b5615ca8c333f912cfcp@chr12:15941738..15941768, +
4.77e-57FFCP PHASE1:Hg19::chr12:15941738..15941768,+#_777319b7e74c4b5615ca8c333f912cfcp@chr12:15941738..15941768, +
6.36e-57FFCP PHASE1:Hg19::chr5:149537789..149537803,-#_2aa1af41562af1e7d5d01ad470cfe941p@chr5:149537789..149537803, -
6.36e-57FFCP PHASE2:Hg19::chr5:149537789..149537803,-#_2aa1af41562af1e7d5d01ad470cfe941p@chr5:149537789..149537803, -
8.82e-51FFCP PHASE2:Hg19::chr10:105677427..105677438,-#_828eca357bd19d0bc522ff4a42db597cp7@OBFC1
8.82e-51FFCP PHASE1:Hg19::chr14:76072096..76072107,+#_828eca357bd19d0bc522ff4a42db597cp7@FLVCR2
8.82e-51FFCP PHASE2:Hg19::chr14:76072096..76072107,+#_828eca357bd19d0bc522ff4a42db597cp7@FLVCR2
8.82e-51FFCP PHASE1:Hg19::chr10:105677427..105677438,-#_828eca357bd19d0bc522ff4a42db597cp7@OBFC1
5.15e-50FFCP PHASE1:Hg19::chr16:65159735..65159744,-#_ed30d797c2fd4b69c9949b2f4a17f551p@chr16:65159735..65159744, -
5.15e-50FFCP PHASE2:Hg19::chr16:65159735..65159744,-#_ed30d797c2fd4b69c9949b2f4a17f551p@chr16:65159735..65159744, -
1.22e-44FFCP PHASE1:Hg19::chr5:158523468..158523481,-#_f60572326e2252e7e69aeef6b871e683p20@EBF1
1.22e-44FFCP PHASE2:Hg19::chr5:158523468..158523481,-#_f60572326e2252e7e69aeef6b871e683p20@EBF1
1.53e-44FFCP PHASE1:Hg19::chr11:60680190..60680212,+#_61b6a1f80eef4677daaad2075ebfe0b0p@chr11:60680190..60680212, +
1.53e-44FFCP PHASE2:Hg19::chr11:60680190..60680212,+#_61b6a1f80eef4677daaad2075ebfe0b0p@chr11:60680190..60680212, +
5.99e-41FFCP PHASE1:Hg19::chr9:132390755..132390781,+#_f0991b8ac538eec39f0239ee8b1961e7p7@METTL11A
5.99e-41FFCP PHASE2:Hg19::chr9:132390755..132390781,+#_f0991b8ac538eec39f0239ee8b1961e7p7@METTL11A
8.98e-41FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_34556fe26b1dfdb60b33bd311abba06fp@chr1:19778678..19778689, -
8.98e-41FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_34556fe26b1dfdb60b33bd311abba06fp@chr1:19778678..19778689, -
1.34e-40FFCP PHASE2:Hg19::chr4:111397216..111397250,+#_679a2ae48fee72663312c3962a07729ep8@ENPEP
1.34e-40FFCP PHASE1:Hg19::chr4:111397216..111397250,+#_679a2ae48fee72663312c3962a07729ep8@ENPEP
9.84e-37FFCP PHASE1:Hg19::chr11:44331735..44331747,-#_f783acb5985a1419238caf180161ca5cp3@ALX4
9.84e-37FFCP PHASE2:Hg19::chr11:44331735..44331747,-#_f783acb5985a1419238caf180161ca5cp3@ALX4
1.18e-36FFCP PHASE1:Hg19::chr1:236203048..236203055,-#_71fa6227b37d7106307c0324cde797ecp@chr1:236203048..236203055, -
1.18e-36FFCP PHASE2:Hg19::chr1:236203048..236203055,-#_71fa6227b37d7106307c0324cde797ecp@chr1:236203048..236203055, -
1.42e-36FFCP PHASE1:Hg19::chr6:72970377..72970387,+#_6c4d294a4d791e8267b54b9cad676613p20@RIMS1
1.42e-36FFCP PHASE2:Hg19::chr6:72970377..72970387,+#_6c4d294a4d791e8267b54b9cad676613p20@RIMS1
1.7e-36FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_cca996eaa865f7d591f78147fd8e2ea0p@chr14:87636652..87636657, -
1.7e-36FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_cca996eaa865f7d591f78147fd8e2ea0p@chr14:87636652..87636657, -
2.04e-36FFCP PHASE2:Hg19::chr14:61654271..61654282,+#_d7e838550df3ce5bac13a12549dd00fdp30@PRKCH
2.04e-36FFCP PHASE1:Hg19::chr14:61654271..61654282,+#_d7e838550df3ce5bac13a12549dd00fdp30@PRKCH
1.11e-34FFCP PHASE1:Hg19::chr12:108732917..108732935,-#_64ba460e3f511083c70056ce2fb7de81p5@CMKLR1
1.11e-34FFCP PHASE2:Hg19::chr12:108732917..108732935,-#_64ba460e3f511083c70056ce2fb7de81p5@CMKLR1
5.04e-34FFCP PHASE1:Hg19::chr9:130830760..130830783,+#_d06907d5848180ef6af1869760994731p11@SLC25A25
5.04e-34FFCP PHASE2:Hg19::chr9:130830760..130830783,+#_d06907d5848180ef6af1869760994731p11@SLC25A25
7.05e-34FFCP PHASE1:Hg19::chr8:128902610..128902630,+#_597a861fbff9e95e1e6f062a1bcf6445p17@PVT1
7.05e-34FFCP PHASE1:Hg19::chr2:231988425..231988433,-#_597a861fbff9e95e1e6f062a1bcf6445p11@HTR2B
7.05e-34FFCP PHASE1:Hg19::chr6:36906253..36906260,-#_597a861fbff9e95e1e6f062a1bcf6445p@chr6:36906253..36906260, -
7.05e-34FFCP PHASE2:Hg19::chr6:36906253..36906260,-#_597a861fbff9e95e1e6f062a1bcf6445p@chr6:36906253..36906260, -
7.05e-34FFCP PHASE2:Hg19::chr2:231988425..231988433,-#_597a861fbff9e95e1e6f062a1bcf6445p11@HTR2B
7.05e-34FFCP PHASE2:Hg19::chr8:128902610..128902630,+#_597a861fbff9e95e1e6f062a1bcf6445p17@PVT1
7.05e-34FFCP PHASE1:Hg19::chr15:95869480..95869493,+#_597a861fbff9e95e1e6f062a1bcf6445p@chr15:95869480..95869493, +
7.05e-34FFCP PHASE2:Hg19::chr15:95869480..95869493,+#_597a861fbff9e95e1e6f062a1bcf6445p@chr15:95869480..95869493, +
1.37e-31FFCP PHASE1:Hg19::chr2:223536233..223536234,+#_625af520b98da23882bc9a7184a15365p3@MOGAT1
1.37e-31FFCP PHASE2:Hg19::chr2:223536233..223536234,+#_625af520b98da23882bc9a7184a15365p3@MOGAT1
4.71e-31FFCP PHASE1:Hg19::chr3:147127961..147127972,+#_7c69fb728b1697c433fb872f6b64a7a2p3@AB464362
4.71e-31FFCP PHASE2:Hg19::chr3:147127961..147127972,+#_7c69fb728b1697c433fb872f6b64a7a2p3@AB464362
4.71e-31FFCP PHASE1:Hg19::chr5:134260455..134260471,-#_7c69fb728b1697c433fb872f6b64a7a2p@chr5:134260455..134260471, -
4.71e-31FFCP PHASE2:Hg19::chr5:134260455..134260471,-#_7c69fb728b1697c433fb872f6b64a7a2p@chr5:134260455..134260471, -
6.96e-30FFCP PHASE1:Hg19::chr16:65159902..65159909,-#_bd850132685272741448dc4cf10ed034p@chr16:65159902..65159909, -
6.96e-30FFCP PHASE2:Hg19::chr16:65159902..65159909,-#_bd850132685272741448dc4cf10ed034p@chr16:65159902..65159909, -
1.08e-29FFCP PHASE1:Hg19::chr5:149537807..149537827,-#_927a3175d2ca4b566d8d25421a1be744p@chr5:149537807..149537827, -
1.08e-29FFCP PHASE2:Hg19::chr5:149537807..149537827,-#_927a3175d2ca4b566d8d25421a1be744p@chr5:149537807..149537827, -
9.09e-27FFCP PHASE1:Hg19::chr3:147124547..147124563,-#_b0a3267fbef54509fc167a5cbe86aa05p6@ZIC4
9.09e-27FFCP PHASE2:Hg19::chr3:147124547..147124563,-#_b0a3267fbef54509fc167a5cbe86aa05p6@ZIC4
1.67e-26FFCP PHASE2:Hg19::chr2:238066183..238066194,-#_870a4fbd0bac05d32ac72877d17f9445p@chr2:238066183..238066194, -
1.67e-26FFCP PHASE1:Hg19::chr2:238066183..238066194,-#_870a4fbd0bac05d32ac72877d17f9445p@chr2:238066183..238066194, -
4.08e-26FFCP PHASE1:Hg19::chr5:40910094..40910097,+#_d8393a177309278cd35750272779fe13p@chr5:40910094..40910097, +
4.08e-26FFCP PHASE2:Hg19::chr5:40910094..40910097,+#_d8393a177309278cd35750272779fe13p@chr5:40910094..40910097, +
5.56e-26FFCP PHASE1:Hg19::chr11:61634768..61634777,+#_145f10515d2e5cec099ca05adbb23e33p@chr11:61634768..61634777, +
5.56e-26FFCP PHASE2:Hg19::chr11:61634768..61634777,+#_145f10515d2e5cec099ca05adbb23e33p@chr11:61634768..61634777, +
7.14e-26FFCP PHASE1:Hg19::chr8:58658778..58658788,+#_0f3e99a379f4bd25cdb8f1b9c1fb0666p2@ENST00000518934, p2@uc003xti.1
7.14e-26FFCP PHASE2:Hg19::chr8:58658778..58658788,+#_0f3e99a379f4bd25cdb8f1b9c1fb0666p2@ENST00000518934, p2@uc003xti.1
9.18e-26FFCP PHASE1:Hg19::chr6:129504885..129504896,-#_97fd8128eb517c6e6774b2464acdb55ap@chr6:129504885..129504896, -
9.18e-26FFCP PHASE2:Hg19::chr6:129504885..129504896,-#_97fd8128eb517c6e6774b2464acdb55ap@chr6:129504885..129504896, -
1.44e-25FFCP PHASE1:Hg19::chr12:279773..279812,+#_1d5a6eda1047eb8fe87c01d1858940acp@chr12:279773..279812, +
1.44e-25FFCP PHASE1:Hg19::chr3:147127358..147127369,+#_1d5a6eda1047eb8fe87c01d1858940acp16@ZIC1
1.44e-25FFCP PHASE2:Hg19::chr3:147127358..147127369,+#_1d5a6eda1047eb8fe87c01d1858940acp16@ZIC1
1.44e-25FFCP PHASE2:Hg19::chr12:279773..279812,+#_1d5a6eda1047eb8fe87c01d1858940acp@chr12:279773..279812, +
2.37e-25FFCP PHASE1:Hg19::chr3:147112699..147112713,-#_3d67c18a52cb49044ac2c14817a7f3e8p@chr3:147112699..147112713, -
2.37e-25FFCP PHASE2:Hg19::chr3:147112699..147112713,-#_3d67c18a52cb49044ac2c14817a7f3e8p@chr3:147112699..147112713, -
1.15e-24FFCP PHASE1:Hg19::chr1:47903765..47903783,+#_3c9d401f83259b8e12fa0be7a5b7e5c2p5@FOXD2
1.15e-24FFCP PHASE2:Hg19::chr1:47903765..47903783,+#_3c9d401f83259b8e12fa0be7a5b7e5c2p5@FOXD2
1.45e-24FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_fc5d14d8eb26e3fd1582b2e1e849a736p@chr9:16138889..16138902, -
1.45e-24FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_fc5d14d8eb26e3fd1582b2e1e849a736p@chr9:16138889..16138902, -
2.97e-24FFCP PHASE1:Hg19::chr2:192128035..192128057,+#_4d9d077c385835ec8fa72b85f128c3a2p6@MYO1B
2.97e-24FFCP PHASE2:Hg19::chr2:192128035..192128057,+#_4d9d077c385835ec8fa72b85f128c3a2p6@MYO1B
3.34e-24FFCP PHASE1:Hg19::chr3:147088197..147088208,-#_56ed1b358985456ac50262600b3d3e78p@chr3:147088197..147088208, -
3.34e-24FFCP PHASE2:Hg19::chr3:147088197..147088208,-#_56ed1b358985456ac50262600b3d3e78p@chr3:147088197..147088208, -
5.35e-24FFCP PHASE1:Hg19::chr17:1013251..1013277,-#_98c0fd6cd230d8461d6f855fbe7bd085p@chr17:1013251..1013277, -
5.35e-24FFCP PHASE2:Hg19::chr17:1013251..1013277,-#_98c0fd6cd230d8461d6f855fbe7bd085p@chr17:1013251..1013277, -
1.01e-23FFCP PHASE1:Hg19::chr11:60640905..60640919,+#_f6db5eff4bf7e3c0a2aadd3738095aa8p@chr11:60640905..60640919, +
1.01e-23FFCP PHASE2:Hg19::chr11:60640905..60640919,+#_f6db5eff4bf7e3c0a2aadd3738095aa8p@chr11:60640905..60640919, +
1.42e-23FFCP PHASE1:Hg19::chr17:75446774..75446783,+#_94b4202789d2282391a923f25f52eb5bp49@SEPT9
1.42e-23FFCP PHASE2:Hg19::chr17:75446774..75446783,+#_94b4202789d2282391a923f25f52eb5bp49@SEPT9
3.49e-23FFCP PHASE1:Hg19::chr11:8832119..8832124,-#_bad23fa3c87070d0192a99d88de9bfb9p30@ST5
3.49e-23FFCP PHASE2:Hg19::chr11:8832119..8832124,-#_bad23fa3c87070d0192a99d88de9bfb9p30@ST5
6.84e-23FFCP PHASE1:Hg19::chr6:55739244..55739256,-#_8d097e141430670d75ae8c02850dc68bp2@AB527577, p2@CU693346
6.84e-23FFCP PHASE2:Hg19::chr6:55739244..55739256,-#_8d097e141430670d75ae8c02850dc68bp2@AB527577, p2@CU693346
2.06e-22FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_01570152fc5fbd3344e07ecec5a3584dp6@CCDC86
2.06e-22FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_01570152fc5fbd3344e07ecec5a3584dp6@CCDC86










Property "Property value" (as page type) with input value "UBPROP:0000001 "A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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