Personal tools

UBERON:0002114: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0002114
|alt_id=UBERON:FMA_7206-MA_0000338-MIAA_0000044-XAO_0000236
|name=duodenum
|anatomical_img_id=FMA:7206
|namespace=
|def="The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is inflected. The duodenum first goes anteriorly for a short distance, turns dorsally, and eventually caudally, thus it is a U-shaped structure with two horizontal sections (a ventral and a dorsal one)." [ISBN:0815318960, Wikipedia:Duodenum]
|xref=AAO:0010402;;BTO:0000365;;EFO:0000851;;EHDAA:3830;;EHDAA:3937;;EMAPA:17178;;EMAPA:17193;;EMAPA:18661;;EMAPA:18852;;EV:0100073;;FMA:7206;;GAID:284;;galen:Duodenum;;MA:0000338;;MAT:0000044;;MESH:A.03.492.411.620.270;;MIAA:0000044;;ncithesaurus:Duodenum;;OpenCyc:Mx4rv4LJDpwpEbGdrcN5Y29ycA;;SCTID:181247007;;VHOG:0000052;;XAO:0000236
|is_a=UBERON:0004921
|synonym="proximal intestine" RELATED [BTO:0000365];;"upper intestine" RELATED [BTO:0000365]
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_7206-MA_0000338-MIAA_0000044-XAO_0000236
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is inflected. The duodenum first goes anteriorly for a short distance, turns dorsally, and eventually caudally, thus it is a U-shaped structure with two horizontal sections (a ventral and a dorsal one)." [ISBN:0815318960, Wikipedia:Duodenum]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002114
|is_a=UBERON:0004921
|is_obsolete=
|located_in=
|located_in=
|name=duodenum
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002108
|part_of=UBERON:0002108
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value="dubious_for_taxon" NCBITaxon:7955;;IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=uberon_slim;;vertebrate_core
|synonym="proximal intestine" RELATED [BTO:0000365];;"upper intestine" RELATED [BTO:0000365]
|union_of=
|xref=AAO:0010402;;BTO:0000365;;EFO:0000851;;EHDAA:3830;;EHDAA:3937;;EMAPA:17178;;EMAPA:17193;;EMAPA:18661;;EMAPA:18852;;EV:0100073;;FMA:7206;;GAID:284;;galen:Duodenum;;http://upload.wikimedia.org/wikipedia/commons/b/b3/Tractus_intestinalis_duodenum.svg;;MA:0000338;;MAT:0000044;;MESH:A.03.492.411.620.270;;MIAA:0000044;;ncithesaurus:Duodenum;;OpenCyc:Mx4rv4LJDpwpEbGdrcN5Y29ycA;;SCTID:181247007;;VHOG:0000052;;XAO:0000236
}}
}}

Latest revision as of 17:26, 12 September 2014

Name:duodenum
Namespace:FANTOM
Definition:"The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is inflected. The duodenum first goes anteriorly for a short distance, turns dorsally, and eventually caudally, thus it is a U-shaped structure with two horizontal sections (a ventral and a dorsal one)." [ISBN:0815318960, Wikipedia:Duodenum]
Xrefs:
links:

AAO:0010402
BTO:0000365
EFO:0000851
EHDAA:3830
EHDAA:3937
EMAPA:17178
EMAPA:17193
EMAPA:18661
EMAPA:18852
EV:0100073
FMA:7206
GAID:284
galen:Duodenum
[1]
MA:0000338
MAT:0000044
MESH:A.03.492.411.620.270
MIAA:0000044
ncithesaurus:Duodenum
OpenCyc:Mx4rv4LJDpwpEbGdrcN5Y29ycA
SCTID:181247007
VHOG:0000052

XAO:0000236
Synonyms: "proximal intestine" RELATED [BTO:0000365]
"upper intestine" RELATED [BTO:0000365]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_7206-MA_0000338-MIAA_0000044-XAO_0000236
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004921(subdivision of digestive tract)
part_of:UBERON:0002108(small intestine)



Children

derives from:FF:0010063 (human duodenum - fetal sample)
develops from:UBERON:0003922 (pancreatic epithelial bud)
part of:UBERON:0004914 (duodenal papilla),FF:0010063 (human duodenum - fetal sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002114 (duodenum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.39e-66FFCP PHASE1:Hg19::chr15:20093569..20093572,+#_75c62016a3c8f3a32af131955696dd28p@chr15:20093569..20093572, +
2.39e-66FFCP PHASE2:Hg19::chr19:49545691..49545692,+#_75c62016a3c8f3a32af131955696dd28p@chr19:49545691..49545692, +
2.39e-66FFCP PHASE1:Hg19::chr7:99779265..99779276,+#_75c62016a3c8f3a32af131955696dd28p15@STAG3
2.39e-66FFCP PHASE2:Hg19::chr7:98807901..98807908,-#_75c62016a3c8f3a32af131955696dd28p@chr7:98807901..98807908, -
2.39e-66FFCP PHASE2:Hg19::chr15:20093569..20093572,+#_75c62016a3c8f3a32af131955696dd28p@chr15:20093569..20093572, +
2.39e-66FFCP PHASE1:Hg19::chr19:49545691..49545692,+#_75c62016a3c8f3a32af131955696dd28p@chr19:49545691..49545692, +
2.39e-66FFCP PHASE2:Hg19::chr7:98796685..98796688,-#_75c62016a3c8f3a32af131955696dd28p@chr7:98796685..98796688, -
2.39e-66FFCP PHASE2:Hg19::chr19:15923954..15923958,-#_75c62016a3c8f3a32af131955696dd28p@chr19:15923954..15923958, -
2.39e-66FFCP PHASE2:Hg19::chr7:99779265..99779276,+#_75c62016a3c8f3a32af131955696dd28p15@STAG3
2.39e-66FFCP PHASE1:Hg19::chr7:98807901..98807908,-#_75c62016a3c8f3a32af131955696dd28p@chr7:98807901..98807908, -
2.39e-66FFCP PHASE1:Hg19::chr19:15923954..15923958,-#_75c62016a3c8f3a32af131955696dd28p@chr19:15923954..15923958, -
2.39e-66FFCP PHASE1:Hg19::chr7:98796685..98796688,-#_75c62016a3c8f3a32af131955696dd28p@chr7:98796685..98796688, -
4.27e-34FFCP PHASE1:Hg19::chr3:139035972..139036016,-#_7908796ddf21d6f42395ac3b8938756bp@chr3:139035972..139036016, -
4.27e-34FFCP PHASE1:Hg19::chrX:14748928..14748935,+#_7908796ddf21d6f42395ac3b8938756bp@chrX:14748928..14748935, +
4.27e-34FFCP PHASE1:Hg19::chr7:98595103..98595105,-#_7908796ddf21d6f42395ac3b8938756bp@chr7:98595103..98595105, -
4.27e-34FFCP PHASE2:Hg19::chr19:49545646..49545652,+#_7908796ddf21d6f42395ac3b8938756bp@chr19:49545646..49545652, +
4.27e-34FFCP PHASE2:Hg19::chr3:139035972..139036016,-#_7908796ddf21d6f42395ac3b8938756bp@chr3:139035972..139036016, -
4.27e-34FFCP PHASE1:Hg19::chr19:49545646..49545652,+#_7908796ddf21d6f42395ac3b8938756bp@chr19:49545646..49545652, +
4.27e-34FFCP PHASE2:Hg19::chrX:14748928..14748935,+#_7908796ddf21d6f42395ac3b8938756bp@chrX:14748928..14748935, +
4.27e-34FFCP PHASE2:Hg19::chr7:98595103..98595105,-#_7908796ddf21d6f42395ac3b8938756bp@chr7:98595103..98595105, -
5.96e-34FFCP PHASE1:Hg19::chr2:133408105..133408109,-#_00a07033bab602d3d78334f8a1f069c9p@chr2:133408105..133408109, -
5.96e-34FFCP PHASE1:Hg19::chr13:70035762..70035773,+#_00a07033bab602d3d78334f8a1f069c9p@chr13:70035762..70035773, +
5.96e-34FFCP PHASE1:Hg19::chr3:148545430..148545465,+#_00a07033bab602d3d78334f8a1f069c9p8@CPB1
5.96e-34FFCP PHASE2:Hg19::chr16:20322541..20322560,-#_00a07033bab602d3d78334f8a1f069c9p@chr16:20322541..20322560, -
5.96e-34FFCP PHASE1:Hg19::chr22:30653778..30653783,-#_00a07033bab602d3d78334f8a1f069c9p@chr22:30653778..30653783, -
5.96e-34FFCP PHASE1:Hg19::chr5:40415240..40415245,+#_00a07033bab602d3d78334f8a1f069c9p@chr5:40415240..40415245, +
5.96e-34FFCP PHASE1:Hg19::chr7:75910322..75910332,+#_00a07033bab602d3d78334f8a1f069c9p@chr7:75910322..75910332, +
5.96e-34FFCP PHASE1:Hg19::chr10:118307868..118307873,+#_00a07033bab602d3d78334f8a1f069c9p@chr10:118307868..118307873, +
5.96e-34FFCP PHASE1:Hg19::chr16:20319465..20319474,-#_00a07033bab602d3d78334f8a1f069c9p@chr16:20319465..20319474, -
5.96e-34FFCP PHASE2:Hg19::chr2:174136708..174136746,-#_00a07033bab602d3d78334f8a1f069c9p2@MLK7-AS1
5.96e-34FFCP PHASE1:Hg19::chr1:15653436..15653448,+#_00a07033bab602d3d78334f8a1f069c9p12@FHAD1
5.96e-34FFCP PHASE1:Hg19::chr3:148552307..148552332,+#_00a07033bab602d3d78334f8a1f069c9p@chr3:148552307..148552332, +
5.96e-34FFCP PHASE1:Hg19::chr16:20329655..20329664,-#_00a07033bab602d3d78334f8a1f069c9p@chr16:20329655..20329664, -
5.96e-34FFCP PHASE2:Hg19::chr16:20329594..20329605,-#_00a07033bab602d3d78334f8a1f069c9p@chr16:20329594..20329605, -
5.96e-34FFCP PHASE1:Hg19::chr7:130022025..130022028,-#_00a07033bab602d3d78334f8a1f069c9p@chr7:130022025..130022028, -
5.96e-34FFCP PHASE2:Hg19::chr3:148558735..148558742,+#_00a07033bab602d3d78334f8a1f069c9p3@BC015104
5.96e-34FFCP PHASE1:Hg19::chr14:24162221..24162248,+#_00a07033bab602d3d78334f8a1f069c9p@chr14:24162221..24162248, +
5.96e-34FFCP PHASE1:Hg19::chr20:8630056..8630060,+#_00a07033bab602d3d78334f8a1f069c9p6@PLCB1
5.96e-34FFCP PHASE2:Hg19::chr16:20321376..20321386,-#_00a07033bab602d3d78334f8a1f069c9p@chr16:20321376..20321386, -
5.96e-34FFCP PHASE1:Hg19::chr2:40184895..40184905,-#_00a07033bab602d3d78334f8a1f069c9p@chr2:40184895..40184905, -
5.96e-34FFCP PHASE2:Hg19::chr10:118307916..118307927,+#_00a07033bab602d3d78334f8a1f069c9p@chr10:118307916..118307927, +
5.96e-34FFCP PHASE2:Hg19::chr7:98870790..98870795,+#_00a07033bab602d3d78334f8a1f069c9p7@MYH16
5.96e-34FFCP PHASE2:Hg19::chr11:8290633..8290665,-#_00a07033bab602d3d78334f8a1f069c9p11@LMO1
5.96e-34FFCP PHASE2:Hg19::chr10:26505179..26505186,+#_00a07033bab602d3d78334f8a1f069c9p13@GAD2
5.96e-34FFCP PHASE1:Hg19::chr2:50320593..50320596,-#_00a07033bab602d3d78334f8a1f069c9p@chr2:50320593..50320596, -
5.96e-34FFCP PHASE2:Hg19::chr13:70035762..70035773,+#_00a07033bab602d3d78334f8a1f069c9p@chr13:70035762..70035773, +
5.96e-34FFCP PHASE1:Hg19::chr6:39290407..39290416,-#_00a07033bab602d3d78334f8a1f069c9p5@KCNK16
5.96e-34FFCP PHASE1:Hg19::chr3:148545533..148545534,+#_00a07033bab602d3d78334f8a1f069c9p10@CPB1
5.96e-34FFCP PHASE2:Hg19::chr2:139535391..139535401,-#_00a07033bab602d3d78334f8a1f069c9p@chr2:139535391..139535401, -
5.96e-34FFCP PHASE2:Hg19::chrX:11408506..11408511,-#_00a07033bab602d3d78334f8a1f069c9p@chrX:11408506..11408511, -
5.96e-34FFCP PHASE2:Hg19::chr17:26818577..26818591,+#_00a07033bab602d3d78334f8a1f069c9p@chr17:26818577..26818591, +
5.96e-34FFCP PHASE2:Hg19::chr10:118314717..118314725,+#_00a07033bab602d3d78334f8a1f069c9p@chr10:118314717..118314725, +
5.96e-34FFCP PHASE1:Hg19::chr10:118307916..118307927,+#_00a07033bab602d3d78334f8a1f069c9p@chr10:118307916..118307927, +
5.96e-34FFCP PHASE1:Hg19::chr4:174456011..174456013,+#_00a07033bab602d3d78334f8a1f069c9p@chr4:174456011..174456013, +
5.96e-34FFCP PHASE2:Hg19::chr16:20319465..20319474,-#_00a07033bab602d3d78334f8a1f069c9p@chr16:20319465..20319474, -
5.96e-34FFCP PHASE1:Hg19::chr1:22310762..22310769,+#_00a07033bab602d3d78334f8a1f069c9p9@CELA3B
5.96e-34FFCP PHASE2:Hg19::chr7:142480038..142480045,+#_00a07033bab602d3d78334f8a1f069c9p2@TRY6
5.96e-34FFCP PHASE2:Hg19::chr20:61339609..61339610,+#_00a07033bab602d3d78334f8a1f069c9p@chr20:61339609..61339610, +
5.96e-34FFCP PHASE2:Hg19::chr3:148563293..148563303,+#_00a07033bab602d3d78334f8a1f069c9p@chr3:148563293..148563303, +
5.96e-34FFCP PHASE1:Hg19::chr11:1023637..1023640,-#_00a07033bab602d3d78334f8a1f069c9p@chr11:1023637..1023640, -
5.96e-34FFCP PHASE1:Hg19::chr3:148552336..148552342,+#_00a07033bab602d3d78334f8a1f069c9p@chr3:148552336..148552342, +
5.96e-34FFCP PHASE1:Hg19::chr7:98870980..98870981,+#_00a07033bab602d3d78334f8a1f069c9p8@MYH16
5.96e-34FFCP PHASE1:Hg19::chr5:112214095..112214109,-#_00a07033bab602d3d78334f8a1f069c9p@chr5:112214095..112214109, -
5.96e-34FFCP PHASE1:Hg19::chr10:26505179..26505186,+#_00a07033bab602d3d78334f8a1f069c9p13@GAD2
5.96e-34FFCP PHASE2:Hg19::chr16:20329655..20329664,-#_00a07033bab602d3d78334f8a1f069c9p@chr16:20329655..20329664, -
5.96e-34FFCP PHASE1:Hg19::chr11:8290633..8290665,-#_00a07033bab602d3d78334f8a1f069c9p11@LMO1
5.96e-34FFCP PHASE1:Hg19::chr17:26818577..26818591,+#_00a07033bab602d3d78334f8a1f069c9p@chr17:26818577..26818591, +
5.96e-34FFCP PHASE2:Hg19::chr14:24162221..24162248,+#_00a07033bab602d3d78334f8a1f069c9p@chr14:24162221..24162248, +
5.96e-34FFCP PHASE2:Hg19::chr10:118315554..118315565,+#_00a07033bab602d3d78334f8a1f069c9p@chr10:118315554..118315565, +
5.96e-34FFCP PHASE2:Hg19::chr11:69867159..69867175,-#_00a07033bab602d3d78334f8a1f069c9p3@ENST00000528507
5.96e-34FFCP PHASE1:Hg19::chr7:142479959..142479966,+#_00a07033bab602d3d78334f8a1f069c9p4@TRY6
5.96e-34FFCP PHASE1:Hg19::chr10:118314717..118314725,+#_00a07033bab602d3d78334f8a1f069c9p@chr10:118314717..118314725, +
5.96e-34FFCP PHASE2:Hg19::chr10:118307937..118307947,+#_00a07033bab602d3d78334f8a1f069c9p@chr10:118307937..118307947, +
5.96e-34FFCP PHASE1:Hg19::chr3:148558688..148558695,+#_00a07033bab602d3d78334f8a1f069c9p5@BC015104
5.96e-34FFCP PHASE2:Hg19::chr10:124594497..124594500,-#_00a07033bab602d3d78334f8a1f069c9p@chr10:124594497..124594500, -
5.96e-34FFCP PHASE1:Hg19::chr8:107669952..107669963,+#_00a07033bab602d3d78334f8a1f069c9p34@OXR1
5.96e-34FFCP PHASE1:Hg19::chr13:23368290..23368299,+#_00a07033bab602d3d78334f8a1f069c9p@chr13:23368290..23368299, +
5.96e-34FFCP PHASE2:Hg19::chr7:100907782..100907785,+#_00a07033bab602d3d78334f8a1f069c9p@chr7:100907782..100907785, +
5.96e-34FFCP PHASE1:Hg19::chr7:150037547..150037552,-#_00a07033bab602d3d78334f8a1f069c9p10@RARRES2
5.96e-34FFCP PHASE1:Hg19::chr10:118315554..118315565,+#_00a07033bab602d3d78334f8a1f069c9p@chr10:118315554..118315565, +
5.96e-34FFCP PHASE2:Hg19::chr10:118314765..118314775,+#_00a07033bab602d3d78334f8a1f069c9p@chr10:118314765..118314775, +
5.96e-34FFCP PHASE1:Hg19::chr11:69867159..69867175,-#_00a07033bab602d3d78334f8a1f069c9p3@ENST00000528507
5.96e-34FFCP PHASE2:Hg19::chr3:148545430..148545465,+#_00a07033bab602d3d78334f8a1f069c9p8@CPB1
5.96e-34FFCP PHASE1:Hg19::chr10:118307937..118307947,+#_00a07033bab602d3d78334f8a1f069c9p@chr10:118307937..118307947, +
5.96e-34FFCP PHASE2:Hg19::chr2:133408105..133408109,-#_00a07033bab602d3d78334f8a1f069c9p@chr2:133408105..133408109, -
5.96e-34FFCP PHASE2:Hg19::chr22:30653778..30653783,-#_00a07033bab602d3d78334f8a1f069c9p@chr22:30653778..30653783, -
5.96e-34FFCP PHASE1:Hg19::chr2:79365549..79365554,-#_00a07033bab602d3d78334f8a1f069c9p1@REG1P
5.96e-34FFCP PHASE2:Hg19::chr5:40415240..40415245,+#_00a07033bab602d3d78334f8a1f069c9p@chr5:40415240..40415245, +
5.96e-34FFCP PHASE1:Hg19::chr13:96024979..96024980,-#_00a07033bab602d3d78334f8a1f069c9p@chr13:96024979..96024980, -
5.96e-34FFCP PHASE1:Hg19::chr10:124594497..124594500,-#_00a07033bab602d3d78334f8a1f069c9p@chr10:124594497..124594500, -
5.96e-34FFCP PHASE2:Hg19::chr7:75910322..75910332,+#_00a07033bab602d3d78334f8a1f069c9p@chr7:75910322..75910332, +
5.96e-34FFCP PHASE2:Hg19::chr1:22307532..22307539,+#_00a07033bab602d3d78334f8a1f069c9p10@CELA3B
5.96e-34FFCP PHASE2:Hg19::chr10:118315582..118315593,+#_00a07033bab602d3d78334f8a1f069c9p@chr10:118315582..118315593, +
5.96e-34FFCP PHASE2:Hg19::chr1:220292419..220292423,-#_00a07033bab602d3d78334f8a1f069c9p@chr1:220292419..220292423, -
5.96e-34FFCP PHASE2:Hg19::chr3:148552307..148552332,+#_00a07033bab602d3d78334f8a1f069c9p@chr3:148552307..148552332, +
5.96e-34FFCP PHASE1:Hg19::chr10:118314765..118314775,+#_00a07033bab602d3d78334f8a1f069c9p@chr10:118314765..118314775, +
5.96e-34FFCP PHASE2:Hg19::chr7:130022025..130022028,-#_00a07033bab602d3d78334f8a1f069c9p@chr7:130022025..130022028, -
5.96e-34FFCP PHASE1:Hg19::chr3:148558735..148558742,+#_00a07033bab602d3d78334f8a1f069c9p3@BC015104
5.96e-34FFCP PHASE2:Hg19::chr20:8630056..8630060,+#_00a07033bab602d3d78334f8a1f069c9p6@PLCB1
5.96e-34FFCP PHASE1:Hg19::chr16:20318450..20318460,-#_00a07033bab602d3d78334f8a1f069c9p@chr16:20318450..20318460, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002114&oldid=3277380"