UBERON:0002224: Difference between revisions
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|def="Body cavity subdivision which is enclosed by the thoracic wall and the diaphragm[FMA]." [FMA:7565, Wikipedia:Thoracic_cavity] | |def="Body cavity subdivision which is enclosed by the thoracic wall and the diaphragm[FMA]." [FMA:7565, Wikipedia:Thoracic_cavity] | ||
|xref=FMA:7565;;GAID:93;;http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Scheme_body_cavities-en.svg/200px-Scheme_body_cavities-en.svg.png;;MA:0000032;;MESH:A.01.911.800;;ncithesaurus:Thoracic_Cavity;;OpenCyc:Mx4rmvyleLfEEduAAAACs6hRXg;;OpenCyc:Mx4rvhU_TpwpEbGdrcN5Y29ycA;;SCTID:243949006 | |xref=FMA:7565;;GAID:93;;http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray846.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Scheme_body_cavities-en.svg/200px-Scheme_body_cavities-en.svg.png;;MA:0000032;;MESH:A.01.911.800;;ncithesaurus:Thoracic_Cavity;;OpenCyc:Mx4rmvyleLfEEduAAAACs6hRXg;;OpenCyc:Mx4rvhU_TpwpEbGdrcN5Y29ycA;;SCTID:243949006 | ||
|is_a=UBERON:0000464 | |is_a=UBERON:0000464 | ||
|synonym="cavity of chest" EXACT [];;"cavity of thorax" EXACT [];;"chest cavity" EXACT [];;"pectoral cavity" EXACT [];;"space of thoracic compartment" EXACT [FMA:7565] | |synonym="cavitas thoracis" RELATED LATIN [Wikipedia:Thoracic_cavity];;"cavity of chest" EXACT [];;"cavity of thorax" EXACT [];;"chest cavity" EXACT [];;"pectoral cavity" EXACT [];;"space of thoracic compartment" EXACT [FMA:7565] | ||
|comment=This class was created automatically from a combination of ontologies | |comment=This class was created automatically from a combination of ontologies | ||
|alt_id=UBERON:FMA_7565-MA_0000032 | |alt_id=UBERON:FMA_7565-MA_0000032 | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim | |subset=uberon_slim | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
Latest revision as of 13:31, 27 June 2012
| Name: | thoracic cavity | ||
|---|---|---|---|
| Definition: | "Body cavity subdivision which is enclosed by the thoracic wall and the diaphragm[FMA]." [FMA:7565, Wikipedia:Thoracic_cavity] | ||
| Xrefs: |
| ||
| Synonyms: |
"cavitas thoracis" RELATED LATIN [Wikipedia:Thoracic_cavity] "cavity of chest" EXACT [] "cavity of thorax" EXACT [] "chest cavity" EXACT [] "pectoral cavity" EXACT [] "space of thoracic compartment" EXACT [FMA:7565] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_7565-MA_0000032 | ||
| Subset: | uberon_slim |
Gray846.png]
200px-Scheme_body_cavities-en.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000464(anatomical space) |
|---|---|
| part_of: | UBERON:0000915(thoracic segment of trunk) |
Children
NA
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10015-101C6 (esophagus, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10099-102C9
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10446-106F5
... further results Mouse (Mus musculus)
- 10015-101C6 (esophagus, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10099-102C9
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10446-106F5
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002224 (thoracic cavity), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.21e-66 | FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_859d9428304bd19141808240624fa87c | p4@Tbx4 |
| 1.21e-66 | FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_859d9428304bd19141808240624fa87c | p4@Tbx4 |
| 4.71e-66 | FFCP PHASE2:Mm9::chr9:20829911..20829920,+#_3837079dac416688b8789d438e306dfb | p@chr9:20829911..20829920, + |
| 4.71e-66 | FFCP PHASE1:Mm9::chr9:20829911..20829920,+#_3837079dac416688b8789d438e306dfb | p@chr9:20829911..20829920, + |
| 1.06e-62 | FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_d32ba4677b69ee6e6e73eac9b78e827b | p1@ENSMUST00000134305 |
| 1.06e-62 | FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_d32ba4677b69ee6e6e73eac9b78e827b | p1@ENSMUST00000134305 |
| 1.52e-61 | FFCP PHASE2:Mm9::chr11:85533239..85533252,-#_f2f5617d136e09b5481c77631ac37ee4 | p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1 |
| 1.52e-61 | FFCP PHASE1:Mm9::chr11:85533239..85533252,-#_f2f5617d136e09b5481c77631ac37ee4 | p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1 |
| 1.91e-61 | FFCP PHASE1:Mm9::chr11:85699562..85699575,+#_8f98a1f7227a21901febbc34b6a9db35 | p6@Tbx4 |
| 1.91e-61 | FFCP PHASE2:Mm9::chr11:85699562..85699575,+#_8f98a1f7227a21901febbc34b6a9db35 | p6@Tbx4 |
| 5.56e-61 | FFCP PHASE1:Mm9::chr11:59457994..59457997,-#_c3443aba2ca4b839eda120fa9d5f05b1 | p@chr11:59457994..59457997, - |
| 5.56e-61 | FFCP PHASE2:Mm9::chr12:57598716..57598720,-#_c3443aba2ca4b839eda120fa9d5f05b1 | p@chr12:57598716..57598720, - |
| 5.56e-61 | FFCP PHASE1:Mm9::chr8:94878479..94878503,-#_c3443aba2ca4b839eda120fa9d5f05b1 | p@chr8:94878479..94878503, - |
| 5.56e-61 | FFCP PHASE2:Mm9::chr4:138812977..138812992,+#_c3443aba2ca4b839eda120fa9d5f05b1 | p@chr4:138812977..138812992, + |
| 5.56e-61 | FFCP PHASE1:Mm9::chr4:138812977..138812992,+#_c3443aba2ca4b839eda120fa9d5f05b1 | p@chr4:138812977..138812992, + |
| 5.56e-61 | FFCP PHASE1:Mm9::chr12:57636003..57636017,-#_c3443aba2ca4b839eda120fa9d5f05b1 | p@chr12:57636003..57636017, - |
| 5.56e-61 | FFCP PHASE2:Mm9::chr12:57636003..57636017,-#_c3443aba2ca4b839eda120fa9d5f05b1 | p@chr12:57636003..57636017, - |
| 5.56e-61 | FFCP PHASE2:Mm9::chr8:94878479..94878503,-#_c3443aba2ca4b839eda120fa9d5f05b1 | p@chr8:94878479..94878503, - |
| 5.56e-61 | FFCP PHASE1:Mm9::chr12:57598716..57598720,-#_c3443aba2ca4b839eda120fa9d5f05b1 | p@chr12:57598716..57598720, - |
| 5.56e-61 | FFCP PHASE2:Mm9::chr11:59457994..59457997,-#_c3443aba2ca4b839eda120fa9d5f05b1 | p@chr11:59457994..59457997, - |
| 1.35e-60 | FFCP PHASE2:Mm9::chr7:56809246..56809272,+#_ed81ffebede32ebd3f2a4fac56863515 | p9@Nav2 |
| 1.35e-60 | FFCP PHASE1:Mm9::chr7:56809246..56809272,+#_ed81ffebede32ebd3f2a4fac56863515 | p9@Nav2 |
| 2.87e-58 | FFCP PHASE2:Mm9::chr12:57633887..57633899,-#_23dac743503944ec29f7c34ba3ef3325 | p@chr12:57633887..57633899, - |
| 2.87e-58 | FFCP PHASE1:Mm9::chr12:57633887..57633899,-#_23dac743503944ec29f7c34ba3ef3325 | p@chr12:57633887..57633899, - |
| 1.23e-57 | FFCP PHASE2:Mm9::chr12:57637649..57637665,-#_9ff8cec9238281e169bcde136e90a87b | p8@Nkx2-1 |
| 1.23e-57 | FFCP PHASE1:Mm9::chr12:57637649..57637665,-#_9ff8cec9238281e169bcde136e90a87b | p8@Nkx2-1 |
| 1.37e-57 | FFCP PHASE1:Mm9::chr12:57630487..57630498,-#_88906dfd972e7ab7b956927451eef9bf | p2@E030019B13Rik |
| 1.37e-57 | FFCP PHASE2:Mm9::chr12:57630487..57630498,-#_88906dfd972e7ab7b956927451eef9bf | p2@E030019B13Rik |
| 1.53e-57 | FFCP PHASE2:Mm9::chr2:17653019..17653038,-#_ea3760e9f21dd29931b5f6aa8084187c | p10@Nebl |
| 1.53e-57 | FFCP PHASE1:Mm9::chr2:17653019..17653038,-#_ea3760e9f21dd29931b5f6aa8084187c | p10@Nebl |
| 1.7e-57 | FFCP PHASE2:Mm9::chr12:57637700..57637717,-#_a3a38306070d4f999d2f69d61d549868 | p9@Nkx2-1 |
| 1.7e-57 | FFCP PHASE1:Mm9::chr12:57637700..57637717,-#_a3a38306070d4f999d2f69d61d549868 | p9@Nkx2-1 |
| 1.79e-56 | FFCP PHASE1:Mm9::chr12:57630364..57630373,-#_6b97a59df3d6a761c6806184384f5732 | p3@E030019B13Rik |
| 1.79e-56 | FFCP PHASE2:Mm9::chr12:57598537..57598547,-#_6b97a59df3d6a761c6806184384f5732 | p@chr12:57598537..57598547, - |
| 1.79e-56 | FFCP PHASE1:Mm9::chr12:57598537..57598547,-#_6b97a59df3d6a761c6806184384f5732 | p@chr12:57598537..57598547, - |
| 1.79e-56 | FFCP PHASE2:Mm9::chr12:57630364..57630373,-#_6b97a59df3d6a761c6806184384f5732 | p3@E030019B13Rik |
| 1.79e-56 | FFCP PHASE1:Mm9::chr19:18833097..18833135,+#_6b97a59df3d6a761c6806184384f5732 | p3@Trpm6 |
| 1.79e-56 | FFCP PHASE2:Mm9::chr19:18833097..18833135,+#_6b97a59df3d6a761c6806184384f5732 | p3@Trpm6 |
| 2.01e-56 | FFCP PHASE1:Mm9::chr14:115241755..115241762,-#_b5f8a56f9e4a3b427668e90825dbceda | p@chr14:115241755..115241762, - |
| 2.01e-56 | FFCP PHASE2:Mm9::chr14:115241755..115241762,-#_b5f8a56f9e4a3b427668e90825dbceda | p@chr14:115241755..115241762, - |
| 2.01e-56 | FFCP PHASE2:Mm9::chr12:57636278..57636289,+#_b5f8a56f9e4a3b427668e90825dbceda | p@chr12:57636278..57636289, + |
| 2.01e-56 | FFCP PHASE1:Mm9::chr12:57636278..57636289,+#_b5f8a56f9e4a3b427668e90825dbceda | p@chr12:57636278..57636289, + |
| 2.24e-56 | FFCP PHASE2:Mm9::chr4:138812999..138813015,+#_f61f38e6567ad7a000b0a1119a933cfc | p@chr4:138812999..138813015, + |
| 2.24e-56 | FFCP PHASE1:Mm9::chr4:138812999..138813015,+#_f61f38e6567ad7a000b0a1119a933cfc | p@chr4:138812999..138813015, + |
| 3.93e-56 | FFCP PHASE2:Mm9::chr1:40522810..40522820,+#_686e0d46c5b3e348edf725a07b14a820 | p7@Il18r1 |
| 3.93e-56 | FFCP PHASE1:Mm9::chr1:40522810..40522820,+#_686e0d46c5b3e348edf725a07b14a820 | p7@Il18r1 |
| 6.2e-56 | FFCP PHASE1:Mm9::chr6:72256828..72256859,+#_5f0420dfc5b024a513381ed2a58e6e0a | p3@Sftpb |
| 6.2e-56 | FFCP PHASE1:Mm9::chr14:70921265..70921285,-#_5f0420dfc5b024a513381ed2a58e6e0a | p@chr14:70921265..70921285, - |
| 6.2e-56 | FFCP PHASE1:Mm9::chr6:72255924..72255936,+#_5f0420dfc5b024a513381ed2a58e6e0a | p4@Sftpb |
| 6.2e-56 | FFCP PHASE1:Mm9::chr2:66524237..66524246,-#_5f0420dfc5b024a513381ed2a58e6e0a | p@chr2:66524237..66524246, - |
| 6.2e-56 | FFCP PHASE2:Mm9::chr1:184610062..184610074,+#_5f0420dfc5b024a513381ed2a58e6e0a | p@chr1:184610062..184610074, + |
| 6.2e-56 | FFCP PHASE2:Mm9::chr2:164374820..164374835,-#_5f0420dfc5b024a513381ed2a58e6e0a | p@chr2:164374820..164374835, - |
| 6.2e-56 | FFCP PHASE2:Mm9::chr6:72256828..72256859,+#_5f0420dfc5b024a513381ed2a58e6e0a | p3@Sftpb |
| 6.2e-56 | FFCP PHASE2:Mm9::chr6:72255924..72255936,+#_5f0420dfc5b024a513381ed2a58e6e0a | p4@Sftpb |
| 6.2e-56 | FFCP PHASE2:Mm9::chr14:70922576..70922589,-#_5f0420dfc5b024a513381ed2a58e6e0a | p@chr14:70922576..70922589, - |
| 6.2e-56 | FFCP PHASE2:Mm9::chr2:66524237..66524246,-#_5f0420dfc5b024a513381ed2a58e6e0a | p@chr2:66524237..66524246, - |
| 6.2e-56 | FFCP PHASE1:Mm9::chr14:70922576..70922589,-#_5f0420dfc5b024a513381ed2a58e6e0a | p@chr14:70922576..70922589, - |
| 6.2e-56 | FFCP PHASE1:Mm9::chr2:164374820..164374835,-#_5f0420dfc5b024a513381ed2a58e6e0a | p@chr2:164374820..164374835, - |
| 6.2e-56 | FFCP PHASE1:Mm9::chr1:184610062..184610074,+#_5f0420dfc5b024a513381ed2a58e6e0a | p@chr1:184610062..184610074, + |
| 6.2e-56 | FFCP PHASE2:Mm9::chr14:70921265..70921285,-#_5f0420dfc5b024a513381ed2a58e6e0a | p@chr14:70921265..70921285, - |
| 9.42e-56 | FFCP PHASE1:Mm9::chr5:120282691..120282701,+#_b9306ccc777d97e736b5604a5e136f2d | p@chr5:120282691..120282701, + |
| 9.42e-56 | FFCP PHASE2:Mm9::chr5:120282691..120282701,+#_b9306ccc777d97e736b5604a5e136f2d | p@chr5:120282691..120282701, + |
| 1.34e-54 | FFCP PHASE1:Mm9::chr12:57636911..57636924,-#_5f8673f67f37b01aa16c67c80cb900f2 | p@chr12:57636911..57636924, - |
| 1.34e-54 | FFCP PHASE2:Mm9::chr12:57636911..57636924,-#_5f8673f67f37b01aa16c67c80cb900f2 | p@chr12:57636911..57636924, - |
| 3.97e-54 | FFCP PHASE2:Mm9::chr12:57630443..57630450,-#_d965edf235911f154d1f89b5dd1a7f31 | p4@E030019B13Rik |
| 3.97e-54 | FFCP PHASE1:Mm9::chr12:57630443..57630450,-#_d965edf235911f154d1f89b5dd1a7f31 | p4@E030019B13Rik |
| 1.46e-52 | FFCP PHASE1:Mm9::chr12:57623172..57623185,-#_cd38cdd5778e1fa4d564712f3829bee0 | p@chr12:57623172..57623185, - |
| 1.46e-52 | FFCP PHASE2:Mm9::chr14:70922007..70922052,+#_cd38cdd5778e1fa4d564712f3829bee0 | p@chr14:70922007..70922052, + |
| 1.46e-52 | FFCP PHASE1:Mm9::chr14:70922007..70922052,+#_cd38cdd5778e1fa4d564712f3829bee0 | p@chr14:70922007..70922052, + |
| 1.46e-52 | FFCP PHASE2:Mm9::chr12:57623172..57623185,-#_cd38cdd5778e1fa4d564712f3829bee0 | p@chr12:57623172..57623185, - |
| 1.62e-52 | FFCP PHASE2:Mm9::chr5:28785436..28785450,-#_82fbaba8853d0cce23bf4635614c4fef | p@chr5:28785436..28785450, - |
| 1.62e-52 | FFCP PHASE1:Mm9::chr5:28785436..28785450,-#_82fbaba8853d0cce23bf4635614c4fef | p@chr5:28785436..28785450, - |
| 1.8e-52 | FFCP PHASE2:Mm9::chr14:70922459..70922482,-#_835d2299b49b49ece29dbe3ee3399e8b | p@chr14:70922459..70922482, - |
| 1.8e-52 | FFCP PHASE1:Mm9::chr14:70922459..70922482,-#_835d2299b49b49ece29dbe3ee3399e8b | p@chr14:70922459..70922482, - |
| 5.65e-52 | FFCP PHASE2:Mm9::chr16:22439804..22439806,-#_8a9fa8864d0b2beda64472c862613ef1 | p4@Etv5 |
| 5.65e-52 | FFCP PHASE1:Mm9::chr16:22439804..22439806,-#_8a9fa8864d0b2beda64472c862613ef1 | p4@Etv5 |
| 1.97e-51 | FFCP PHASE1:Mm9::chr6:72264890..72264911,+#_da8e811de2c5ebb927b04b23cd71e26c | p@chr6:72264890..72264911, + |
| 1.97e-51 | FFCP PHASE2:Mm9::chr6:72263977..72263993,+#_da8e811de2c5ebb927b04b23cd71e26c | p@chr6:72263977..72263993, + |
| 1.97e-51 | FFCP PHASE2:Mm9::chr14:70923240..70923251,-#_da8e811de2c5ebb927b04b23cd71e26c | p@chr14:70923240..70923251, - |
| 1.97e-51 | FFCP PHASE2:Mm9::chr6:72264890..72264911,+#_da8e811de2c5ebb927b04b23cd71e26c | p@chr6:72264890..72264911, + |
| 1.97e-51 | FFCP PHASE1:Mm9::chr6:72263977..72263993,+#_da8e811de2c5ebb927b04b23cd71e26c | p@chr6:72263977..72263993, + |
| 1.97e-51 | FFCP PHASE2:Mm9::chr14:70922486..70922510,-#_da8e811de2c5ebb927b04b23cd71e26c | p@chr14:70922486..70922510, - |
| 1.97e-51 | FFCP PHASE1:Mm9::chr12:57376690..57376716,-#_da8e811de2c5ebb927b04b23cd71e26c | p@chr12:57376690..57376716, - |
| 1.97e-51 | FFCP PHASE1:Mm9::chr6:72264418..72264441,+#_da8e811de2c5ebb927b04b23cd71e26c | p@chr6:72264418..72264441, + |
| 1.97e-51 | FFCP PHASE1:Mm9::chr14:70923240..70923251,-#_da8e811de2c5ebb927b04b23cd71e26c | p@chr14:70923240..70923251, - |
| 1.97e-51 | FFCP PHASE1:Mm9::chr16:19706386..19706390,-#_da8e811de2c5ebb927b04b23cd71e26c | p4@Lamp3 |
| 1.97e-51 | FFCP PHASE2:Mm9::chr6:72259797..72259814,+#_da8e811de2c5ebb927b04b23cd71e26c | p@chr6:72259797..72259814, + |
| 1.97e-51 | FFCP PHASE1:Mm9::chr14:70922486..70922510,-#_da8e811de2c5ebb927b04b23cd71e26c | p@chr14:70922486..70922510, - |
| 1.97e-51 | FFCP PHASE2:Mm9::chr6:72264418..72264441,+#_da8e811de2c5ebb927b04b23cd71e26c | p@chr6:72264418..72264441, + |
| 1.97e-51 | FFCP PHASE2:Mm9::chr12:57376690..57376716,-#_da8e811de2c5ebb927b04b23cd71e26c | p@chr12:57376690..57376716, - |
| 1.97e-51 | FFCP PHASE2:Mm9::chr16:19706386..19706390,-#_da8e811de2c5ebb927b04b23cd71e26c | p4@Lamp3 |
| 1.97e-51 | FFCP PHASE1:Mm9::chr6:72259797..72259814,+#_da8e811de2c5ebb927b04b23cd71e26c | p@chr6:72259797..72259814, + |
| 2.21e-51 | FFCP PHASE1:Mm9::chr6:72264609..72264653,-#_060ad69b9fab15f934603d1783d9dc8b | p@chr6:72264609..72264653, - |
| 2.21e-51 | FFCP PHASE2:Mm9::chr6:72264609..72264653,-#_060ad69b9fab15f934603d1783d9dc8b | p@chr6:72264609..72264653, - |
| 2.47e-51 | FFCP PHASE1:Mm9::chr6:129378567..129378573,-#_60d31842c16e39655fdf7f2ab10462f8 | p@chr6:129378567..129378573, - |
| 2.47e-51 | FFCP PHASE2:Mm9::chr6:129378567..129378573,-#_60d31842c16e39655fdf7f2ab10462f8 | p@chr6:129378567..129378573, - |
| 3.74e-51 | FFCP PHASE1:Mm9::chr3:122432836..122432847,+#_1371e4046b37ba645a2f4bd9d56d595d | p16@Pde5a |
| 3.74e-51 | FFCP PHASE2:Mm9::chr3:122432836..122432847,+#_1371e4046b37ba645a2f4bd9d56d595d | p16@Pde5a |
| 5.44e-51 | FFCP PHASE2:Mm9::chr12:57637595..57637608,-#_b29d61876da7e7d634b7289010705f2a | p7@Nkx2-1 |
| 5.44e-51 | FFCP PHASE1:Mm9::chr12:57637595..57637608,-#_b29d61876da7e7d634b7289010705f2a | p7@Nkx2-1 |
