Personal tools

UBERON:0004909: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0004909
|alt_id=
|name=epithelium of gonad
|namespace=
|def="An epithelium surrounding a gonad." [OBOL:automatic]
|xref=EHDAA:4032;;EHDAA:5931;;FBbt:00004859;;ncithesaurus:Germinal_Epithelium
|is_a=UBERON:0000483;;UBERON:0005156
|synonym="gonad epithelium" EXACT [OBOL:automatic];;"gonadal epithelium" EXACT [OBOL:automatic]
|comment=Note that after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts
|comment=Note that after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An epithelium surrounding a gonad." [OBOL:automatic]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004909
|is_a=UBERON:0005156 ;;UBERON:0012275
|is_obsolete=
|located_in=
|located_in=
|name=epithelium of gonad
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000991
|part_of=UBERON:0000991
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="gonad epithelium" EXACT [OBOL:automatic];;"gonadal epithelium" EXACT [OBOL:automatic]
|union_of=
|xref=EHDAA:4032;;EHDAA:5931;;FBbt:00004859;;ncithesaurus:Germinal_Epithelium
}}
}}

Latest revision as of 17:49, 12 September 2014

Name:epithelium of gonad
Namespace:FANTOM
Definition:"An epithelium surrounding a gonad." [OBOL:automatic]
Xrefs:
links:

EHDAA:4032
EHDAA:5931
FBbt:00004859

ncithesaurus:Germinal_Epithelium
Synonyms: "gonad epithelium" EXACT [OBOL:automatic]
"gonadal epithelium" EXACT [OBOL:automatic]
Comments:Note that after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005156(reproductive structure),UBERON:0012275(meso-epithelium)
part_of:UBERON:0000991(gonad)



Children

is a:UBERON:0004910 (epithelium of male gonad),UBERON:0004911 (epithelium of female gonad),UBERON:0010141 (primitive sex cord of indifferent gonad)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004909 (epithelium of gonad), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr4:159430869..159430885,-#_af0699777fefb4adf8e00599d5465ee7p1@ENST00000502566
1.55e-98FFCP PHASE2:Hg19::chr8:20070210..20070250,+#_af0699777fefb4adf8e00599d5465ee7p@chr8:20070210..20070250, +
1.55e-98FFCP PHASE1:Hg19::chr6:137844183..137844191,-#_af0699777fefb4adf8e00599d5465ee7p@chr6:137844183..137844191, -
1.55e-98FFCP PHASE2:Hg19::chr4:135331403..135331405,-#_af0699777fefb4adf8e00599d5465ee7p@chr4:135331403..135331405, -
1.55e-98FFCP PHASE2:Hg19::chr1:214650069..214650072,-#_af0699777fefb4adf8e00599d5465ee7p@chr1:214650069..214650072, -
1.55e-98FFCP PHASE2:Hg19::chr8:142247940..142247948,-#_af0699777fefb4adf8e00599d5465ee7p@chr8:142247940..142247948, -
1.55e-98FFCP PHASE1:Hg19::chr20:15891295..15891297,-#_af0699777fefb4adf8e00599d5465ee7p@chr20:15891295..15891297, -
1.55e-98FFCP PHASE1:Hg19::chr2:231906019..231906031,+#_af0699777fefb4adf8e00599d5465ee7p6@C2orf72
1.55e-98FFCP PHASE2:Hg19::chr20:15871874..15871910,-#_af0699777fefb4adf8e00599d5465ee7p@chr20:15871874..15871910, -
1.55e-98FFCP PHASE2:Hg19::chr13:23486051..23486062,+#_af0699777fefb4adf8e00599d5465ee7p@chr13:23486051..23486062, +
1.55e-98FFCP PHASE1:Hg19::chr5:31936363..31936370,+#_af0699777fefb4adf8e00599d5465ee7p19@PDZD2
1.55e-98FFCP PHASE2:Hg19::chr18:11959017..11959052,+#_af0699777fefb4adf8e00599d5465ee7p@chr18:11959017..11959052, +
1.55e-98FFCP PHASE2:Hg19::chr4:159430869..159430885,-#_af0699777fefb4adf8e00599d5465ee7p1@ENST00000502566
1.55e-98FFCP PHASE1:Hg19::chr1:214650077..214650084,-#_af0699777fefb4adf8e00599d5465ee7p@chr1:214650077..214650084, -
1.55e-98FFCP PHASE2:Hg19::chr6:137844183..137844191,-#_af0699777fefb4adf8e00599d5465ee7p@chr6:137844183..137844191, -
1.55e-98FFCP PHASE1:Hg19::chr20:15942024..15942025,-#_af0699777fefb4adf8e00599d5465ee7p@chr20:15942024..15942025, -
1.55e-98FFCP PHASE2:Hg19::chr20:15891295..15891297,-#_af0699777fefb4adf8e00599d5465ee7p@chr20:15891295..15891297, -
1.55e-98FFCP PHASE2:Hg19::chr2:231906019..231906031,+#_af0699777fefb4adf8e00599d5465ee7p6@C2orf72
1.55e-98FFCP PHASE2:Hg19::chr5:31936363..31936370,+#_af0699777fefb4adf8e00599d5465ee7p19@PDZD2
1.55e-98FFCP PHASE1:Hg19::chr6:14049473..14049508,+#_af0699777fefb4adf8e00599d5465ee7p@chr6:14049473..14049508, +
1.55e-98FFCP PHASE2:Hg19::chr1:214650077..214650084,-#_af0699777fefb4adf8e00599d5465ee7p@chr1:214650077..214650084, -
1.55e-98FFCP PHASE2:Hg19::chr12:132681039..132681046,+#_af0699777fefb4adf8e00599d5465ee7p@chr12:132681039..132681046, +
1.55e-98FFCP PHASE1:Hg19::chr12:132681039..132681046,+#_af0699777fefb4adf8e00599d5465ee7p@chr12:132681039..132681046, +
1.55e-98FFCP PHASE1:Hg19::chr1:46787487..46787492,-#_af0699777fefb4adf8e00599d5465ee7p@chr1:46787487..46787492, -
1.55e-98FFCP PHASE2:Hg19::chr20:15942024..15942025,-#_af0699777fefb4adf8e00599d5465ee7p@chr20:15942024..15942025, -
1.55e-98FFCP PHASE1:Hg19::chrX:16530591..16530601,-#_af0699777fefb4adf8e00599d5465ee7p@chrX:16530591..16530601, -
1.55e-98FFCP PHASE1:Hg19::chr4:175204717..175204728,-#_af0699777fefb4adf8e00599d5465ee7p17@FBXO8
1.55e-98FFCP PHASE1:Hg19::chr20:62113538..62113571,-#_af0699777fefb4adf8e00599d5465ee7p@chr20:62113538..62113571, -
1.55e-98FFCP PHASE1:Hg19::chr3:168861573..168861582,-#_af0699777fefb4adf8e00599d5465ee7p@chr3:168861573..168861582, -
1.55e-98FFCP PHASE1:Hg19::chr7:134627808..134627842,+#_af0699777fefb4adf8e00599d5465ee7p@chr7:134627808..134627842, +
1.55e-98FFCP PHASE1:Hg19::chr18:11959017..11959052,+#_af0699777fefb4adf8e00599d5465ee7p@chr18:11959017..11959052, +
1.55e-98FFCP PHASE2:Hg19::chr6:14049473..14049508,+#_af0699777fefb4adf8e00599d5465ee7p@chr6:14049473..14049508, +
1.55e-98FFCP PHASE2:Hg19::chr1:46787487..46787492,-#_af0699777fefb4adf8e00599d5465ee7p@chr1:46787487..46787492, -
1.55e-98FFCP PHASE1:Hg19::chr22:31739255..31739259,-#_af0699777fefb4adf8e00599d5465ee7p28@PATZ1
1.55e-98FFCP PHASE2:Hg19::chrX:16530591..16530601,-#_af0699777fefb4adf8e00599d5465ee7p@chrX:16530591..16530601, -
1.55e-98FFCP PHASE1:Hg19::chr20:15873011..15873014,-#_af0699777fefb4adf8e00599d5465ee7p@chr20:15873011..15873014, -
1.55e-98FFCP PHASE2:Hg19::chr17:36068486..36068493,+#_af0699777fefb4adf8e00599d5465ee7p@chr17:36068486..36068493, +
1.55e-98FFCP PHASE2:Hg19::chr4:175204717..175204728,-#_af0699777fefb4adf8e00599d5465ee7p17@FBXO8
1.55e-98FFCP PHASE2:Hg19::chr20:62113538..62113571,-#_af0699777fefb4adf8e00599d5465ee7p@chr20:62113538..62113571, -
1.55e-98FFCP PHASE2:Hg19::chr3:168861573..168861582,-#_af0699777fefb4adf8e00599d5465ee7p@chr3:168861573..168861582, -
1.55e-98FFCP PHASE1:Hg19::chr2:34971950..34971953,+#_af0699777fefb4adf8e00599d5465ee7p@chr2:34971950..34971953, +
1.55e-98FFCP PHASE1:Hg19::chr4:159446395..159446403,+#_af0699777fefb4adf8e00599d5465ee7p@chr4:159446395..159446403, +
1.55e-98FFCP PHASE1:Hg19::chr6:64049378..64049403,-#_af0699777fefb4adf8e00599d5465ee7p@chr6:64049378..64049403, -
1.55e-98FFCP PHASE2:Hg19::chr12:132681059..132681070,+#_af0699777fefb4adf8e00599d5465ee7p@chr12:132681059..132681070, +
1.55e-98FFCP PHASE1:Hg19::chr12:132681059..132681070,+#_af0699777fefb4adf8e00599d5465ee7p@chr12:132681059..132681070, +
1.55e-98FFCP PHASE2:Hg19::chr20:15873011..15873014,-#_af0699777fefb4adf8e00599d5465ee7p@chr20:15873011..15873014, -
1.55e-98FFCP PHASE2:Hg19::chr11:89223721..89223728,-#_af0699777fefb4adf8e00599d5465ee7p@chr11:89223721..89223728, -
1.55e-98FFCP PHASE1:Hg19::chr11:89223721..89223728,-#_af0699777fefb4adf8e00599d5465ee7p@chr11:89223721..89223728, -
1.55e-98FFCP PHASE2:Hg19::chr22:31739255..31739259,-#_af0699777fefb4adf8e00599d5465ee7p28@PATZ1
1.55e-98FFCP PHASE2:Hg19::chr4:159446395..159446403,+#_af0699777fefb4adf8e00599d5465ee7p@chr4:159446395..159446403, +
1.55e-98FFCP PHASE2:Hg19::chr14:64405176..64405183,+#_af0699777fefb4adf8e00599d5465ee7p@chr14:64405176..64405183, +
1.55e-98FFCP PHASE1:Hg19::chr14:64405176..64405183,+#_af0699777fefb4adf8e00599d5465ee7p@chr14:64405176..64405183, +
1.55e-98FFCP PHASE2:Hg19::chr6:64049378..64049403,-#_af0699777fefb4adf8e00599d5465ee7p@chr6:64049378..64049403, -
1.55e-98FFCP PHASE2:Hg19::chr12:132680939..132680977,+#_af0699777fefb4adf8e00599d5465ee7p@chr12:132680939..132680977, +
1.55e-98FFCP PHASE1:Hg19::chrX:35711783..35711785,+#_af0699777fefb4adf8e00599d5465ee7p@chrX:35711783..35711785, +
1.55e-98FFCP PHASE1:Hg19::chr12:132680939..132680977,+#_af0699777fefb4adf8e00599d5465ee7p@chr12:132680939..132680977, +
1.55e-98FFCP PHASE1:Hg19::chr20:15878694..15878728,-#_af0699777fefb4adf8e00599d5465ee7p@chr20:15878694..15878728, -
1.55e-98FFCP PHASE1:Hg19::chr8:101363016..101363029,+#_af0699777fefb4adf8e00599d5465ee7p@chr8:101363016..101363029, +
1.55e-98FFCP PHASE1:Hg19::chr3:168802151..168802153,-#_af0699777fefb4adf8e00599d5465ee7p@chr3:168802151..168802153, -
1.55e-98FFCP PHASE2:Hg19::chr7:134627808..134627842,+#_af0699777fefb4adf8e00599d5465ee7p@chr7:134627808..134627842, +
1.55e-98FFCP PHASE1:Hg19::chr4:159541085..159541093,+#_af0699777fefb4adf8e00599d5465ee7p@chr4:159541085..159541093, +
1.55e-98FFCP PHASE1:Hg19::chr6:64050722..64050726,-#_af0699777fefb4adf8e00599d5465ee7p@chr6:64050722..64050726, -
1.55e-98FFCP PHASE2:Hg19::chr10:85857839..85857840,-#_af0699777fefb4adf8e00599d5465ee7p@chr10:85857839..85857840, -
1.55e-98FFCP PHASE1:Hg19::chr10:85857839..85857840,-#_af0699777fefb4adf8e00599d5465ee7p@chr10:85857839..85857840, -
1.55e-98FFCP PHASE2:Hg19::chr2:34971950..34971953,+#_af0699777fefb4adf8e00599d5465ee7p@chr2:34971950..34971953, +
1.55e-98FFCP PHASE1:Hg19::chr22:46812806..46812838,-#_af0699777fefb4adf8e00599d5465ee7p@chr22:46812806..46812838, -
1.55e-98FFCP PHASE2:Hg19::chrX:35711783..35711785,+#_af0699777fefb4adf8e00599d5465ee7p@chrX:35711783..35711785, +
1.55e-98FFCP PHASE1:Hg19::chr20:15898490..15898493,-#_af0699777fefb4adf8e00599d5465ee7p@chr20:15898490..15898493, -
1.55e-98FFCP PHASE2:Hg19::chr20:15878694..15878728,-#_af0699777fefb4adf8e00599d5465ee7p@chr20:15878694..15878728, -
1.55e-98FFCP PHASE2:Hg19::chr8:101363016..101363029,+#_af0699777fefb4adf8e00599d5465ee7p@chr8:101363016..101363029, +
1.55e-98FFCP PHASE2:Hg19::chr3:168802151..168802153,-#_af0699777fefb4adf8e00599d5465ee7p@chr3:168802151..168802153, -
1.55e-98FFCP PHASE2:Hg19::chr11:705180..705187,+#_af0699777fefb4adf8e00599d5465ee7p39@EPS8L2
1.55e-98FFCP PHASE1:Hg19::chr11:705180..705187,+#_af0699777fefb4adf8e00599d5465ee7p39@EPS8L2
1.55e-98FFCP PHASE2:Hg19::chr4:159541085..159541093,+#_af0699777fefb4adf8e00599d5465ee7p@chr4:159541085..159541093, +
1.55e-98FFCP PHASE2:Hg19::chr6:64050722..64050726,-#_af0699777fefb4adf8e00599d5465ee7p@chr6:64050722..64050726, -
1.55e-98FFCP PHASE1:Hg19::chr20:15871874..15871910,-#_af0699777fefb4adf8e00599d5465ee7p@chr20:15871874..15871910, -
1.55e-98FFCP PHASE2:Hg19::chr12:132681008..132681011,+#_af0699777fefb4adf8e00599d5465ee7p@chr12:132681008..132681011, +
1.55e-98FFCP PHASE1:Hg19::chr12:132681008..132681011,+#_af0699777fefb4adf8e00599d5465ee7p@chr12:132681008..132681011, +
1.55e-98FFCP PHASE1:Hg19::chr16:2106134..2106163,+#_af0699777fefb4adf8e00599d5465ee7p18@TSC2
1.55e-98FFCP PHASE2:Hg19::chr20:15898490..15898493,-#_af0699777fefb4adf8e00599d5465ee7p@chr20:15898490..15898493, -
1.55e-98FFCP PHASE1:Hg19::chr17:36068486..36068493,+#_af0699777fefb4adf8e00599d5465ee7p@chr17:36068486..36068493, +
1.55e-98FFCP PHASE2:Hg19::chr22:46812806..46812838,-#_af0699777fefb4adf8e00599d5465ee7p@chr22:46812806..46812838, -
1.55e-98FFCP PHASE2:Hg19::chr16:2106134..2106163,+#_af0699777fefb4adf8e00599d5465ee7p18@TSC2
1.55e-98FFCP PHASE1:Hg19::chr8:20070210..20070250,+#_af0699777fefb4adf8e00599d5465ee7p@chr8:20070210..20070250, +
1.55e-98FFCP PHASE1:Hg19::chr8:142247940..142247948,-#_af0699777fefb4adf8e00599d5465ee7p@chr8:142247940..142247948, -
1.55e-98FFCP PHASE1:Hg19::chr4:135331403..135331405,-#_af0699777fefb4adf8e00599d5465ee7p@chr4:135331403..135331405, -
1.55e-98FFCP PHASE1:Hg19::chr1:214650069..214650072,-#_af0699777fefb4adf8e00599d5465ee7p@chr1:214650069..214650072, -
1.55e-98FFCP PHASE1:Hg19::chr13:23486051..23486062,+#_af0699777fefb4adf8e00599d5465ee7p@chr13:23486051..23486062, +
1.55e-98FFCP PHASE2:Hg19::chr12:123070114..123070123,+#_af0699777fefb4adf8e00599d5465ee7p@chr12:123070114..123070123, +
1.55e-98FFCP PHASE1:Hg19::chr12:123070114..123070123,+#_af0699777fefb4adf8e00599d5465ee7p@chr12:123070114..123070123, +
1.55e-98FFCP PHASE2:Hg19::chr11:27721743..27721753,-#_af0699777fefb4adf8e00599d5465ee7p26@BDNF
1.55e-98FFCP PHASE1:Hg19::chr11:27721743..27721753,-#_af0699777fefb4adf8e00599d5465ee7p26@BDNF
6.41e-58FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_adeec14257fc2ca610d3d28f9b63e0cfp4@Spink12
6.41e-58FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_adeec14257fc2ca610d3d28f9b63e0cfp4@Spink12
1.88e-50FFCP PHASE1:Hg19::chr4:57945307..57945346,-#_d4357b0676cce633dda318fcdcba7b7ap@chr4:57945307..57945346, -
1.88e-50FFCP PHASE2:Hg19::chr4:57945307..57945346,-#_d4357b0676cce633dda318fcdcba7b7ap@chr4:57945307..57945346, -
2.74e-50FFCP PHASE2:Hg19::chr20:15879525..15879530,-#_96c0fbe9b4df0576055fa80be0039847p@chr20:15879525..15879530, -
2.74e-50FFCP PHASE1:Hg19::chr6:24178711..24178718,-#_96c0fbe9b4df0576055fa80be0039847p@chr6:24178711..24178718, -
2.74e-50FFCP PHASE1:Hg19::chr4:175184051..175184061,-#_96c0fbe9b4df0576055fa80be0039847p18@FBXO8
2.74e-50FFCP PHASE1:Hg19::chr18:69246146..69246156,-#_96c0fbe9b4df0576055fa80be0039847p3@LOC100505776

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0004909&oldid=3277716"