UBERON:0006258: Difference between revisions
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|namespace= | |namespace= | ||
|def= | |def= | ||
|xref= | |xref=EHDAA2:0000919;;EHDAA:379;;EMAPA:16179 | ||
|is_a=UBERON:0003104;;UBERON:0005291 | |is_a=UBERON:0003104;;UBERON:0004120;;UBERON:0005291 | ||
|synonym= | |synonym= | ||
|comment=todo - merge | |comment=Editors note: todo - merge with LP mesoderm, review mesoderm/mesenchyme terminology | ||
|alt_id= | |alt_id= | ||
|disjoint_from= | |disjoint_from= | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=emapa_ehdaa2 | |subset=emapa_ehdaa2 | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
Latest revision as of 13:41, 27 June 2012
| Name: | lateral plate mesenchyme | ||
|---|---|---|---|
| Xrefs: |
| ||
| Comments: | Editors note: todo - merge with LP mesoderm, review mesoderm/mesenchyme terminology | ||
| Subset: | emapa_ehdaa2 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003104(mesenchyme),UBERON:0004120(mesoderm-derived structure),UBERON:0005291(embryonic tissue) |
|---|---|
| part_of: | UBERON:0003081(lateral plate mesoderm) |
Children
NA
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006258 (lateral plate mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.37e-99 | FFCP PHASE1:Hg19::chr12:53068923..53068932,-#_d36d1a886430c3cb7f43a9c63b8e3b03 | p@chr12:53068923..53068932, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr12:53068889..53068898,-#_d36d1a886430c3cb7f43a9c63b8e3b03 | p@chr12:53068889..53068898, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr12:53068923..53068932,-#_d36d1a886430c3cb7f43a9c63b8e3b03 | p@chr12:53068923..53068932, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr12:53068889..53068898,-#_d36d1a886430c3cb7f43a9c63b8e3b03 | p@chr12:53068889..53068898, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr9:79379348..79379360,+#_79d39321845401cb5d932f85efe55d26 | p1@PCA3 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr9:79379348..79379360,+#_79d39321845401cb5d932f85efe55d26 | p1@PCA3 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr5:59672718..59672753,-#_79d39321845401cb5d932f85efe55d26 | p@chr5:59672718..59672753, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr5:59672718..59672753,-#_79d39321845401cb5d932f85efe55d26 | p@chr5:59672718..59672753, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr17:38976407..38976413,-#_79d39321845401cb5d932f85efe55d26 | p20@KRT10 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr8:72252453..72252458,-#_79d39321845401cb5d932f85efe55d26 | p@chr8:72252453..72252458, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr8:72252453..72252458,-#_79d39321845401cb5d932f85efe55d26 | p@chr8:72252453..72252458, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr15:45803320..45803343,+#_79d39321845401cb5d932f85efe55d26 | p1@HMGN2P46 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr17:38975820..38975830,-#_79d39321845401cb5d932f85efe55d26 | p10@KRT10 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr16:15811123..15811133,+#_79d39321845401cb5d932f85efe55d26 | p@chr16:15811123..15811133, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr17:38976407..38976413,-#_79d39321845401cb5d932f85efe55d26 | p20@KRT10 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr6:110964453..110964459,-#_79d39321845401cb5d932f85efe55d26 | p16@CDK19 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr6:110964453..110964459,-#_79d39321845401cb5d932f85efe55d26 | p16@CDK19 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr17:38975820..38975830,-#_79d39321845401cb5d932f85efe55d26 | p10@KRT10 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr15:45803320..45803343,+#_79d39321845401cb5d932f85efe55d26 | p1@HMGN2P46 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr16:15811123..15811133,+#_79d39321845401cb5d932f85efe55d26 | p@chr16:15811123..15811133, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr12:53068552..53068579,-#_48a78f53951718f6a2e832feda1248db | p@chr12:53068552..53068579, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr14:74454889..74454892,-#_48a78f53951718f6a2e832feda1248db | p10@ENTPD5 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr12:53068552..53068579,-#_48a78f53951718f6a2e832feda1248db | p@chr12:53068552..53068579, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr14:74454889..74454892,-#_48a78f53951718f6a2e832feda1248db | p10@ENTPD5 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr17:38975850..38975854,-#_64cd4887cb4b51b27fff657fdf1d1267 | p19@KRT10 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr17:38978526..38978535,+#_64cd4887cb4b51b27fff657fdf1d1267 | p@chr17:38978526..38978535, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:209545365..209545377,+#_64cd4887cb4b51b27fff657fdf1d1267 | p1@ENST00000447257 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr17:33640639..33640650,+#_64cd4887cb4b51b27fff657fdf1d1267 | p@chr17:33640639..33640650, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:61416169..61416181,-#_64cd4887cb4b51b27fff657fdf1d1267 | p@chr1:61416169..61416181, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr19:38664309..38664322,+#_64cd4887cb4b51b27fff657fdf1d1267 | p@chr19:38664309..38664322, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr19:51517928..51517936,-#_64cd4887cb4b51b27fff657fdf1d1267 | p2@AK026045 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr2:179399981..179399988,-#_64cd4887cb4b51b27fff657fdf1d1267 | p@chr2:179399981..179399988, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr4:186434325..186434339,-#_64cd4887cb4b51b27fff657fdf1d1267 | p@chr4:186434325..186434339, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr4:186434325..186434339,-#_64cd4887cb4b51b27fff657fdf1d1267 | p@chr4:186434325..186434339, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr17:33640639..33640650,+#_64cd4887cb4b51b27fff657fdf1d1267 | p@chr17:33640639..33640650, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr17:38975796..38975805,-#_64cd4887cb4b51b27fff657fdf1d1267 | p13@KRT10 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr6:152585338..152585342,-#_64cd4887cb4b51b27fff657fdf1d1267 | p@chr6:152585338..152585342, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:209545365..209545377,+#_64cd4887cb4b51b27fff657fdf1d1267 | p1@ENST00000447257 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr2:179393635..179393640,-#_64cd4887cb4b51b27fff657fdf1d1267 | p167@TTN |
| 2.39e-66 | FFCP PHASE2:Hg19::chr19:38664309..38664322,+#_64cd4887cb4b51b27fff657fdf1d1267 | p@chr19:38664309..38664322, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr2:179399981..179399988,-#_64cd4887cb4b51b27fff657fdf1d1267 | p@chr2:179399981..179399988, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr17:38976909..38976919,-#_64cd4887cb4b51b27fff657fdf1d1267 | p@chr17:38976909..38976919, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr17:38975796..38975805,-#_64cd4887cb4b51b27fff657fdf1d1267 | p13@KRT10 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr6:152585338..152585342,-#_64cd4887cb4b51b27fff657fdf1d1267 | p@chr6:152585338..152585342, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr2:179393635..179393640,-#_64cd4887cb4b51b27fff657fdf1d1267 | p167@TTN |
| 2.39e-66 | FFCP PHASE2:Hg19::chr17:38976909..38976919,-#_64cd4887cb4b51b27fff657fdf1d1267 | p@chr17:38976909..38976919, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr17:38975850..38975854,-#_64cd4887cb4b51b27fff657fdf1d1267 | p19@KRT10 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr17:38978526..38978535,+#_64cd4887cb4b51b27fff657fdf1d1267 | p@chr17:38978526..38978535, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:61416169..61416181,-#_64cd4887cb4b51b27fff657fdf1d1267 | p@chr1:61416169..61416181, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr19:51517928..51517936,-#_64cd4887cb4b51b27fff657fdf1d1267 | p2@AK026045 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:179542558..179542568,-#_96c59d039523d9720fb7c23b369688dd | p@chr2:179542558..179542568, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:152520302..152520308,-#_96c59d039523d9720fb7c23b369688dd | p@chr2:152520302..152520308, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr16:34571309..34571314,-#_96c59d039523d9720fb7c23b369688dd | p@chr16:34571309..34571314, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:152520302..152520308,-#_96c59d039523d9720fb7c23b369688dd | p@chr2:152520302..152520308, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:152520333..152520340,-#_96c59d039523d9720fb7c23b369688dd | p@chr2:152520333..152520340, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:152548420..152548425,-#_96c59d039523d9720fb7c23b369688dd | p@chr2:152548420..152548425, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:75869014..75869047,+#_96c59d039523d9720fb7c23b369688dd | p@chr2:75869014..75869047, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:52875783..52875812,-#_96c59d039523d9720fb7c23b369688dd | p7@TMEM110 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr13:103555720..103555725,+#_96c59d039523d9720fb7c23b369688dd | p@chr13:103555720..103555725, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:152520333..152520340,-#_96c59d039523d9720fb7c23b369688dd | p@chr2:152520333..152520340, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:152548420..152548425,-#_96c59d039523d9720fb7c23b369688dd | p@chr2:152548420..152548425, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:75869014..75869047,+#_96c59d039523d9720fb7c23b369688dd | p@chr2:75869014..75869047, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:52875783..52875812,-#_96c59d039523d9720fb7c23b369688dd | p7@TMEM110 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:179542558..179542568,-#_96c59d039523d9720fb7c23b369688dd | p@chr2:179542558..179542568, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr13:103555720..103555725,+#_96c59d039523d9720fb7c23b369688dd | p@chr13:103555720..103555725, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr16:34571309..34571314,-#_96c59d039523d9720fb7c23b369688dd | p@chr16:34571309..34571314, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr5:66771311..66771320,-#_96c59d039523d9720fb7c23b369688dd | p2@ENST00000508512 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr5:66771311..66771320,-#_96c59d039523d9720fb7c23b369688dd | p2@ENST00000508512 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr10:94301107..94301111,-#_96c59d039523d9720fb7c23b369688dd | p18@IDE |
| 4.66e-66 | FFCP PHASE2:Hg19::chr10:94301107..94301111,-#_96c59d039523d9720fb7c23b369688dd | p18@IDE |
| 1.46e-50 | FFCP PHASE1:Hg19::chr17:4448859..4448864,-#_5c5bee6acbce05dfc829931aa34564be | p@chr17:4448859..4448864, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chr2:178753478..178753487,-#_5c5bee6acbce05dfc829931aa34564be | p10@PDE11A |
| 1.46e-50 | FFCP PHASE2:Hg19::chr17:4448859..4448864,-#_5c5bee6acbce05dfc829931aa34564be | p@chr17:4448859..4448864, - |
| 1.46e-50 | FFCP PHASE2:Hg19::chr2:178753478..178753487,-#_5c5bee6acbce05dfc829931aa34564be | p10@PDE11A |
| 2.42e-50 | FFCP PHASE1:Hg19::chr2:152554090..152554096,-#_2f8b11a5d5280d39ca25d46b3f51766e | p@chr2:152554090..152554096, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr10:71351909..71351911,+#_2f8b11a5d5280d39ca25d46b3f51766e | p@chr10:71351909..71351911, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr2:152554090..152554096,-#_2f8b11a5d5280d39ca25d46b3f51766e | p@chr2:152554090..152554096, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr16:56598984..56598990,+#_2f8b11a5d5280d39ca25d46b3f51766e | p1@MT4 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr17:10421962..10421969,-#_2f8b11a5d5280d39ca25d46b3f51766e | p2@MYH1 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr10:71351909..71351911,+#_2f8b11a5d5280d39ca25d46b3f51766e | p@chr10:71351909..71351911, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr2:170783857..170783860,+#_2f8b11a5d5280d39ca25d46b3f51766e | p@chr2:170783857..170783860, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr20:33451327..33451358,-#_2f8b11a5d5280d39ca25d46b3f51766e | p4@GGT7 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr17:10421962..10421969,-#_2f8b11a5d5280d39ca25d46b3f51766e | p2@MYH1 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr10:15646574..15646578,-#_2f8b11a5d5280d39ca25d46b3f51766e | p11@ITGA8 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr2:170783857..170783860,+#_2f8b11a5d5280d39ca25d46b3f51766e | p@chr2:170783857..170783860, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr10:15646574..15646578,-#_2f8b11a5d5280d39ca25d46b3f51766e | p11@ITGA8 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr20:33451327..33451358,-#_2f8b11a5d5280d39ca25d46b3f51766e | p4@GGT7 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr16:56598984..56598990,+#_2f8b11a5d5280d39ca25d46b3f51766e | p1@MT4 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr2:152409955..152409964,-#_70133603049e6e224281e711d97b1a99 | p@chr2:152409955..152409964, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr1:152483278..152483280,+#_70133603049e6e224281e711d97b1a99 | p1@LCE5A |
| 3.99e-50 | FFCP PHASE1:Hg19::chr2:179399074..179399079,-#_70133603049e6e224281e711d97b1a99 | p@chr2:179399074..179399079, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr5:66771335..66771342,-#_70133603049e6e224281e711d97b1a99 | p3@ENST00000508512 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr5:66771335..66771342,-#_70133603049e6e224281e711d97b1a99 | p3@ENST00000508512 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr17:38976882..38976895,-#_70133603049e6e224281e711d97b1a99 | p@chr17:38976882..38976895, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr2:179399074..179399079,-#_70133603049e6e224281e711d97b1a99 | p@chr2:179399074..179399079, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr5:38484957..38484965,-#_70133603049e6e224281e711d97b1a99 | p@chr5:38484957..38484965, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr2:152393727..152393736,-#_70133603049e6e224281e711d97b1a99 | p@chr2:152393727..152393736, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr2:152348920..152348927,-#_70133603049e6e224281e711d97b1a99 | p@chr2:152348920..152348927, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr6:56362490..56362515,-#_70133603049e6e224281e711d97b1a99 | p60@DST |
| 3.99e-50 | FFCP PHASE1:Hg19::chr6:56362490..56362515,-#_70133603049e6e224281e711d97b1a99 | p60@DST |
