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{{UBERON
{{UBERON
|id=UBERON:0006595
|alt_id=
|name=presumptive endoderm
|namespace=
|def=
|xref=AAO:0000471;;EFO:0003437;;ZFA:0000416
|is_a=UBERON:0006598
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0006595
|is_a=UBERON:0006598
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=presumptive endoderm
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000307
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=AAO:0000471;;EFO:0003437;;TAO:0000416;;ZFA:0000416
}}
}}

Latest revision as of 17:58, 12 September 2014

Name:presumptive endoderm
Namespace:FANTOM
Xrefs:
links:

AAO:0000471
EFO:0003437
TAO:0000416

ZFA:0000416

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0006598(presumptive structure)
part_of:UBERON:0000307(blastula)



Children

develops from:UBERON:0000925 (endoderm)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006595 (presumptive endoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.25e-39FFCP PHASE1:Hg19::chr14:38064429..38064486,-#_8729d15d883495d5ee754c75b659bc3bp1@FOXA1
5.25e-39FFCP PHASE2:Hg19::chr14:38064429..38064486,-#_8729d15d883495d5ee754c75b659bc3bp1@FOXA1
5.41e-39FFCP PHASE1:Hg19::chr16:68269971..68270059,-#_48cd5af937ad26d20d1ec53d3093af23p1@ESRP2
5.41e-39FFCP PHASE2:Hg19::chr16:68269971..68270059,-#_48cd5af937ad26d20d1ec53d3093af23p1@ESRP2
4.26e-36FFCP PHASE1:Hg19::chr5:134369879..134369898,-#_52375f574273915a2d7eca191815cbf1p2@PITX1
4.26e-36FFCP PHASE2:Hg19::chr5:134369879..134369898,-#_52375f574273915a2d7eca191815cbf1p2@PITX1
7.78e-36FFCP PHASE1:Hg19::chr20:62168672..62168713,-#_e42278f2e2a25c4411c67a4dc92c401dp1@PTK6
7.78e-36FFCP PHASE2:Hg19::chr20:62168672..62168713,-#_e42278f2e2a25c4411c67a4dc92c401dp1@PTK6
8.3e-36FFCP PHASE2:Hg19::chr1:209825762..209825779,-#_03e738bac386669fe5f2d2f7b0a79555p1@LAMB3
8.3e-36FFCP PHASE1:Hg19::chr1:209825762..209825779,-#_03e738bac386669fe5f2d2f7b0a79555p1@LAMB3
1.75e-35FFCP PHASE1:Hg19::chr11:394196..394258,+#_c6ac22d4370bd83ce8431bdc7f8c933ap1@PKP3
1.75e-35FFCP PHASE2:Hg19::chr11:394196..394258,+#_c6ac22d4370bd83ce8431bdc7f8c933ap1@PKP3
2.07e-35FFCP PHASE2:Hg19::chr19:42212526..42212575,+#_c067dc93f65d32f91f872e3865d1fb2bp1@CEACAM5
2.07e-35FFCP PHASE1:Hg19::chr19:42212526..42212575,+#_c067dc93f65d32f91f872e3865d1fb2bp1@CEACAM5
3.2e-35FFCP PHASE2:Hg19::chr14:65409452..65409479,-#_95053d8a5ff1dd9da8e33ab9c76cbea5p1@GPX2
3.2e-35FFCP PHASE1:Hg19::chr14:65409452..65409479,-#_95053d8a5ff1dd9da8e33ab9c76cbea5p1@GPX2
3.67e-35FFCP PHASE1:Hg19::chr1:26503974..26504025,+#_76600bd939f6feaddc30e43f05b99185p1@CNKSR1
3.67e-35FFCP PHASE2:Hg19::chr1:26503974..26504025,+#_76600bd939f6feaddc30e43f05b99185p1@CNKSR1
2.73e-34FFCP PHASE1:Hg19::chr16:68260798..68260800,-#_d05e00c6e5a75a13851627f8390d67f4p@chr16:68260798..68260800, -
2.73e-34FFCP PHASE2:Hg19::chr16:68260798..68260800,-#_d05e00c6e5a75a13851627f8390d67f4p@chr16:68260798..68260800, -
3.29e-34FFCP PHASE2:Hg19::chr18:47721315..47721430,-#_467c4199ffb6df3a5ad39ea6e5ce7d5cp1@MYO5B
3.29e-34FFCP PHASE1:Hg19::chr18:47721315..47721430,-#_467c4199ffb6df3a5ad39ea6e5ce7d5cp1@MYO5B
3.5e-34FFCP PHASE2:Hg19::chr17:7164410..7164457,-#_6b3c578bc8cd4e738be725b6391a6923p3@CLDN7
3.5e-34FFCP PHASE1:Hg19::chr17:7164410..7164457,-#_6b3c578bc8cd4e738be725b6391a6923p3@CLDN7
1.73e-33FFCP PHASE2:Hg19::chr11:32851450..32851485,+#_393c2f1c3e03f1c139081b48407b7af3p1@PRRG4
1.73e-33FFCP PHASE1:Hg19::chr11:32851450..32851485,+#_393c2f1c3e03f1c139081b48407b7af3p1@PRRG4
3.14e-33FFCP PHASE2:Hg19::chr18:61144160..61144214,+#_006ad7a43fbf350dc64698f781b1b508p1@SERPINB5
3.14e-33FFCP PHASE1:Hg19::chr18:61144160..61144214,+#_006ad7a43fbf350dc64698f781b1b508p1@SERPINB5
3.49e-33FFCP PHASE1:Hg19::chr14:65409484..65409495,-#_ffe1387d01231fca01e55a0104cca71cp2@GPX2
3.49e-33FFCP PHASE2:Hg19::chr14:65409484..65409495,-#_ffe1387d01231fca01e55a0104cca71cp2@GPX2
4.5e-33FFCP PHASE2:Hg19::chr8:82644741..82644791,+#_ed9403324ae336ecf5f8e5da6cd75c28p2@CHMP4C
4.5e-33FFCP PHASE1:Hg19::chr8:82644741..82644791,+#_ed9403324ae336ecf5f8e5da6cd75c28p2@CHMP4C
1.62e-32FFCP PHASE2:Hg19::chr17:39942220..39942242,-#_1297bba885ae253e1a53fbb11a9c0f3cp2@JUP
1.62e-32FFCP PHASE1:Hg19::chr17:39942220..39942242,-#_1297bba885ae253e1a53fbb11a9c0f3cp2@JUP
5.24e-32FFCP PHASE2:Hg19::chr1:201979743..201979762,+#_37e4f90e77813085528e3ef17be661c0p1@ELF3
5.24e-32FFCP PHASE1:Hg19::chr1:201979743..201979762,+#_37e4f90e77813085528e3ef17be661c0p1@ELF3
1.23e-31FFCP PHASE2:Hg19::chr1:207206020..207206050,-#_214dc17b6358935471b2f1bd640d33a3p1@C1orf116
1.23e-31FFCP PHASE1:Hg19::chr1:207206020..207206050,-#_214dc17b6358935471b2f1bd640d33a3p1@C1orf116
1.54e-31FFCP PHASE1:Hg19::chr7:16844611..16844628,-#_3cbe0dc9f973974ba858d02e55971909p1@AGR2
1.54e-31FFCP PHASE2:Hg19::chr7:16844611..16844628,-#_3cbe0dc9f973974ba858d02e55971909p1@AGR2
1.75e-31FFCP PHASE1:Hg19::chr1:201368430..201368460,-#_cd3f8ea5503696286685411c9e418587p1@LAD1
1.75e-31FFCP PHASE2:Hg19::chr1:201368430..201368460,-#_cd3f8ea5503696286685411c9e418587p1@LAD1
1.77e-31FFCP PHASE2:Hg19::chr19:751122..751139,+#_824a0a535872d6b8afb01f042586a194p1@C19orf21
1.77e-31FFCP PHASE1:Hg19::chr19:751122..751139,+#_824a0a535872d6b8afb01f042586a194p1@C19orf21
1.83e-31FFCP PHASE1:Hg19::chrX:48916506..48916557,+#_4a3bca117e5eca18331f9019c6e0a788p1@CCDC120
1.83e-31FFCP PHASE2:Hg19::chrX:48916506..48916557,+#_4a3bca117e5eca18331f9019c6e0a788p1@CCDC120
2.28e-31FFCP PHASE2:Hg19::chr17:38657867..38657882,-#_4857a87bf9885787b289210c1873b096p1@TNS4
2.28e-31FFCP PHASE1:Hg19::chr17:38657867..38657882,-#_4857a87bf9885787b289210c1873b096p1@TNS4
2.84e-31FFCP PHASE2:Hg19::chr19:17905938..17905980,+#_eb412934cf959f6a0342122296b869dfp1@B3GNT3
2.84e-31FFCP PHASE1:Hg19::chr19:17905938..17905980,+#_eb412934cf959f6a0342122296b869dfp1@B3GNT3
3.29e-31FFCP PHASE1:Hg19::chr11:706219..706260,+#_10c0e18ae3f32d9e440173492baed89bp1@EPS8L2
3.29e-31FFCP PHASE2:Hg19::chr11:706219..706260,+#_10c0e18ae3f32d9e440173492baed89bp1@EPS8L2
4.16e-31FFCP PHASE1:Hg19::chr3:111451321..111451372,+#_659de905b4ade2c3cdac2b6fee3a21dbp3@PHLDB2
4.16e-31FFCP PHASE2:Hg19::chr3:111451321..111451372,+#_659de905b4ade2c3cdac2b6fee3a21dbp3@PHLDB2
5.94e-31FFCP PHASE2:Hg19::chr16:57653946..57653968,+#_09b7860f1e56d988003b05fcd1f17d86p4@GPR56
5.94e-31FFCP PHASE1:Hg19::chr16:57653946..57653968,+#_09b7860f1e56d988003b05fcd1f17d86p4@GPR56
1.21e-30FFCP PHASE2:Hg19::chr5:68711023..68711075,+#_d00bc1bd7fc023fa1db393c5d7bf338fp2@MARVELD2
1.21e-30FFCP PHASE1:Hg19::chr5:68711023..68711075,+#_d00bc1bd7fc023fa1db393c5d7bf338fp2@MARVELD2
1.74e-30FFCP PHASE2:Hg19::chr19:751104..751121,+#_c68669c3c39720977c559143ee048434p2@C19orf21
1.74e-30FFCP PHASE1:Hg19::chr19:751104..751121,+#_c68669c3c39720977c559143ee048434p2@C19orf21
2.5e-30FFCP PHASE2:Hg19::chr8:144815914..144815961,-#_d7b79756d953ffdf6984075f6558f4a4p1@FAM83H
2.5e-30FFCP PHASE1:Hg19::chr8:144815914..144815961,-#_d7b79756d953ffdf6984075f6558f4a4p1@FAM83H
2.54e-30FFCP PHASE2:Hg19::chr19:50084561..50084603,+#_48ffc7b68536f50d173f8d4fb54f25e4p1@PRRG2
2.54e-30FFCP PHASE1:Hg19::chr19:50084561..50084603,+#_48ffc7b68536f50d173f8d4fb54f25e4p1@PRRG2
4.0e-30FFCP PHASE1:Hg19::chr1:27189631..27189648,+#_29d74102171643ca6dfaec2038190549p1@SFN
4.0e-30FFCP PHASE2:Hg19::chr1:27189631..27189648,+#_29d74102171643ca6dfaec2038190549p1@SFN
4.35e-30FFCP PHASE1:Hg19::chrX:115567767..115567784,+#_be8073865a4d18d8117d411659cea45dp1@SLC6A14
4.35e-30FFCP PHASE2:Hg19::chrX:115567767..115567784,+#_be8073865a4d18d8117d411659cea45dp1@SLC6A14
4.53e-30FFCP PHASE2:Hg19::chr16:31147020..31147058,-#_e8fa6b13a675865f6816b2c5176bd690p1@PRSS8
4.53e-30FFCP PHASE1:Hg19::chr16:31147020..31147058,-#_e8fa6b13a675865f6816b2c5176bd690p1@PRSS8
5.44e-30FFCP PHASE1:Hg19::chr4:15939963..15939978,-#_10c0ffd850e49befab095277de989f60p1@FGFBP1
5.44e-30FFCP PHASE2:Hg19::chr4:15939963..15939978,-#_10c0ffd850e49befab095277de989f60p1@FGFBP1
5.82e-30FFCP PHASE1:Hg19::chr1:200864020..200864063,+#_f7d1e070b5dcb835e8444ac8051072b3p1@C1orf106
5.82e-30FFCP PHASE2:Hg19::chr1:200864020..200864063,+#_f7d1e070b5dcb835e8444ac8051072b3p1@C1orf106
9.01e-30FFCP PHASE1:Hg19::chr9:139379069..139379135,-#_d3c06cdce66cd883d687b83929b1b036p@chr9:139379069..139379135, -
9.01e-30FFCP PHASE2:Hg19::chr9:139379069..139379135,-#_d3c06cdce66cd883d687b83929b1b036p@chr9:139379069..139379135, -
1.06e-29FFCP PHASE2:Hg19::chr11:72492256..72492358,-#_5894228b05613092f1c8a3fe955c1ddbp3@STARD10
1.06e-29FFCP PHASE2:Hg19::chr14:65409502..65409511,-#_5894228b05613092f1c8a3fe955c1ddbp3@GPX2
1.06e-29FFCP PHASE1:Hg19::chr11:72492256..72492358,-#_5894228b05613092f1c8a3fe955c1ddbp3@STARD10
1.06e-29FFCP PHASE1:Hg19::chr14:65409502..65409511,-#_5894228b05613092f1c8a3fe955c1ddbp3@GPX2
1.32e-29FFCP PHASE1:Hg19::chr1:201368476..201368498,-#_77823974531b94d516d642036c32f75ap4@LAD1
1.32e-29FFCP PHASE2:Hg19::chr1:201368476..201368498,-#_77823974531b94d516d642036c32f75ap4@LAD1
2.3e-29FFCP PHASE1:Hg19::chr5:134369905..134369972,-#_90616d7743efae1755e4ab03b7756decp1@PITX1
2.3e-29FFCP PHASE2:Hg19::chr5:134369905..134369972,-#_90616d7743efae1755e4ab03b7756decp1@PITX1
2.62e-29FFCP PHASE2:Hg19::chr1:153588789..153588808,-#_c8f2f71b0888c4ab66f0031ee62b2994p1@S100A14
2.62e-29FFCP PHASE1:Hg19::chr1:153588789..153588808,-#_c8f2f71b0888c4ab66f0031ee62b2994p1@S100A14
3.05e-29FFCP PHASE2:Hg19::chr1:207206095..207206121,-#_278d1e780c0c87f2ee02b3f162fef38bp2@C1orf116
3.05e-29FFCP PHASE1:Hg19::chr1:207206095..207206121,-#_278d1e780c0c87f2ee02b3f162fef38bp2@C1orf116
3.1e-29FFCP PHASE2:Hg19::chr1:201979703..201979721,+#_68619679e379ca655409531cf54827dfp2@ELF3
3.1e-29FFCP PHASE1:Hg19::chr1:201979703..201979721,+#_68619679e379ca655409531cf54827dfp2@ELF3
3.71e-29FFCP PHASE1:Hg19::chr19:50084621..50084673,+#_0ff2ea1d88c1db37d0911302ba46250cp2@PRRG2
3.71e-29FFCP PHASE2:Hg19::chr19:50084621..50084673,+#_0ff2ea1d88c1db37d0911302ba46250cp2@PRRG2
4.26e-29FFCP PHASE1:Mm9::chr13:4190454..4190472,+#_3b83769d6104ef74a0bc16eee880ba73p2@Akr1c13
4.26e-29FFCP PHASE2:Mm9::chr13:4190454..4190472,+#_3b83769d6104ef74a0bc16eee880ba73p2@Akr1c13
5.11e-29FFCP PHASE2:Hg19::chr11:706174..706213,+#_06c803fbe4963b864112525bb2f5df6cp2@EPS8L2
5.11e-29FFCP PHASE1:Hg19::chr11:706174..706213,+#_06c803fbe4963b864112525bb2f5df6cp2@EPS8L2
5.22e-29FFCP PHASE2:Hg19::chr17:75277512..75277592,+#_12a1248175140db0a7502a67f05ab687p2@SEPT9
5.22e-29FFCP PHASE1:Hg19::chr17:75277512..75277592,+#_12a1248175140db0a7502a67f05ab687p2@SEPT9
5.95e-29FFCP PHASE1:Hg19::chr5:125706998..125707018,+#_064488ad4c4e81e4439ee6123725387bp4@GRAMD3
5.95e-29FFCP PHASE2:Hg19::chr5:125706998..125707018,+#_064488ad4c4e81e4439ee6123725387bp4@GRAMD3

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