Personal tools

UBERON:0009201: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0009201
|alt_id=
|name=nephric duct
|namespace=
|def="A nephric duct is a tube that drains a primitive kidney[GO]." [GO:0072176]
|xref=
|is_a=UBERON:0000058;;UBERON:0003914;;UBERON:0004819;;UBERON:0006553;;UBERON:0006555
|synonym=
|comment=pronephric duct or mesonephric duct
|comment=pronephric duct or mesonephric duct
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A nephric duct is a tube that drains a primitive kidney[GO]." [GO:0072176]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0009201
|is_a=UBERON:0003914 ;;UBERON:0004819 ;;UBERON:0006553
|is_obsolete=
|located_in=
|located_in=
|name=nephric duct
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002113
|part_of=UBERON:0002113
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=UBERON:0003060;;UBERON:0003074
|xref=
}}
}}

Latest revision as of 18:05, 12 September 2014

Name:nephric duct
Namespace:FANTOM
Definition:"A nephric duct is a tube that drains a primitive kidney[GO]." [GO:0072176]
Comments:pronephric duct or mesonephric duct

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003914(epithelial tube),UBERON:0004819(kidney epithelium),UBERON:0006553(renal duct)
union_of:UBERON:0003060(pronephric duct),UBERON:0003074(mesonephric duct)
part_of:UBERON:0002113(kidney)



Children

is a:UBERON:0003060 (pronephric duct),UBERON:0003074 (mesonephric duct)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009201 (nephric duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_e2abe83880ba1d2bc690a5cf9591ad22p4@Spink12
1.58e-86FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_e2abe83880ba1d2bc690a5cf9591ad22p4@Spink12
3.28e-58FFCP PHASE1:Mm9::chr13:21378296..21378303,+#_006addc8dc83332a4f4d9db9adb060d7p@chr13:21378296..21378303, +
3.28e-58FFCP PHASE2:Mm9::chr5:35930706..35930717,+#_006addc8dc83332a4f4d9db9adb060d7p@chr5:35930706..35930717, +
3.28e-58FFCP PHASE1:Mm9::chrX:164787162..164787188,-#_006addc8dc83332a4f4d9db9adb060d7p@chrX:164787162..164787188, -
3.28e-58FFCP PHASE1:Mm9::chr5:31379437..31379448,+#_006addc8dc83332a4f4d9db9adb060d7p@chr5:31379437..31379448, +
3.28e-58FFCP PHASE1:Mm9::chr17:24670830..24670845,+#_006addc8dc83332a4f4d9db9adb060d7p@chr17:24670830..24670845, +
3.28e-58FFCP PHASE1:Mm9::chr15:75304900..75304907,+#_006addc8dc83332a4f4d9db9adb060d7p@chr15:75304900..75304907, +
3.28e-58FFCP PHASE1:Mm9::chr10:85390145..85390153,+#_006addc8dc83332a4f4d9db9adb060d7p@chr10:85390145..85390153, +
3.28e-58FFCP PHASE2:Mm9::chr1:87922778..87922788,+#_006addc8dc83332a4f4d9db9adb060d7p@chr1:87922778..87922788, +
3.28e-58FFCP PHASE1:Mm9::chr1:39707572..39707583,+#_006addc8dc83332a4f4d9db9adb060d7p@chr1:39707572..39707583, +
3.28e-58FFCP PHASE2:Mm9::chr7:65995799..65995810,-#_006addc8dc83332a4f4d9db9adb060d7p@chr7:65995799..65995810, -
3.28e-58FFCP PHASE1:Mm9::chr13:21380610..21380620,-#_006addc8dc83332a4f4d9db9adb060d7p@chr13:21380610..21380620, -
3.28e-58FFCP PHASE2:Mm9::chr11:98567868..98567884,-#_006addc8dc83332a4f4d9db9adb060d7p5@Med24
3.28e-58FFCP PHASE2:Mm9::chrX:130496166..130496188,-#_006addc8dc83332a4f4d9db9adb060d7p@chrX:130496166..130496188, -
3.28e-58FFCP PHASE1:Mm9::chr12:104945515..104945524,-#_006addc8dc83332a4f4d9db9adb060d7p@chr12:104945515..104945524, -
3.28e-58FFCP PHASE2:Mm9::chr14:63611214..63611229,+#_006addc8dc83332a4f4d9db9adb060d7p@chr14:63611214..63611229, +
3.28e-58FFCP PHASE2:Mm9::chr5:31379845..31379855,+#_006addc8dc83332a4f4d9db9adb060d7p@chr5:31379845..31379855, +
3.28e-58FFCP PHASE1:Mm9::chrX:130496260..130496269,-#_006addc8dc83332a4f4d9db9adb060d7p@chrX:130496260..130496269, -
3.28e-58FFCP PHASE1:Mm9::chr9:26785438..26785446,-#_006addc8dc83332a4f4d9db9adb060d7p3@Acad8
3.28e-58FFCP PHASE2:Mm9::chr11:17224952..17224968,+#_006addc8dc83332a4f4d9db9adb060d7p@chr11:17224952..17224968, +
3.28e-58FFCP PHASE1:Mm9::chr14:67453354..67453365,-#_006addc8dc83332a4f4d9db9adb060d7p@chr14:67453354..67453365, -
3.28e-58FFCP PHASE2:Mm9::chr4:137325863..137325870,-#_006addc8dc83332a4f4d9db9adb060d7p15@Alpl
3.28e-58FFCP PHASE1:Mm9::chr6:83487114..83487124,-#_006addc8dc83332a4f4d9db9adb060d7p@chr6:83487114..83487124, -
3.28e-58FFCP PHASE2:Mm9::chr8:23045782..23045791,+#_006addc8dc83332a4f4d9db9adb060d7p@chr8:23045782..23045791, +
3.28e-58FFCP PHASE2:Mm9::chr13:21378766..21378781,+#_006addc8dc83332a4f4d9db9adb060d7p@chr13:21378766..21378781, +
3.28e-58FFCP PHASE1:Mm9::chr16:92995710..92995753,+#_006addc8dc83332a4f4d9db9adb060d7p@chr16:92995710..92995753, +
3.28e-58FFCP PHASE2:Mm9::chr11:101959159..101959163,+#_006addc8dc83332a4f4d9db9adb060d7p@chr11:101959159..101959163, +
3.28e-58FFCP PHASE1:Mm9::chr15:54678902..54678911,-#_006addc8dc83332a4f4d9db9adb060d7p@chr15:54678902..54678911, -
3.28e-58FFCP PHASE1:Mm9::chr11:63779573..63779582,+#_006addc8dc83332a4f4d9db9adb060d7p@chr11:63779573..63779582, +
3.28e-58FFCP PHASE2:Mm9::chr2:152302739..152302742,+#_006addc8dc83332a4f4d9db9adb060d7p5@Defb20
3.28e-58FFCP PHASE2:Mm9::chr11:53955299..53955306,+#_006addc8dc83332a4f4d9db9adb060d7p@chr11:53955299..53955306, +
3.28e-58FFCP PHASE2:Mm9::chr6:147624258..147624285,-#_006addc8dc83332a4f4d9db9adb060d7p@chr6:147624258..147624285, -
3.28e-58FFCP PHASE2:Mm9::chrX:50280199..50280211,+#_006addc8dc83332a4f4d9db9adb060d7p@chrX:50280199..50280211, +
3.28e-58FFCP PHASE2:Mm9::chr13:21381777..21381789,-#_006addc8dc83332a4f4d9db9adb060d7p@chr13:21381777..21381789, -
3.28e-58FFCP PHASE1:Mm9::chrX:10488683..10488691,+#_006addc8dc83332a4f4d9db9adb060d7p@chrX:10488683..10488691, +
3.28e-58FFCP PHASE1:Mm9::chr9:26719400..26719404,-#_006addc8dc83332a4f4d9db9adb060d7p@chr9:26719400..26719404, -
3.28e-58FFCP PHASE2:Mm9::chr19:17585885..17585901,-#_006addc8dc83332a4f4d9db9adb060d7p@chr19:17585885..17585901, -
3.28e-58FFCP PHASE1:Mm9::chr1:90155966..90155989,+#_006addc8dc83332a4f4d9db9adb060d7p@chr1:90155966..90155989, +
3.28e-58FFCP PHASE2:Mm9::chr15:75347689..75347703,+#_006addc8dc83332a4f4d9db9adb060d7p@chr15:75347689..75347703, +
3.28e-58FFCP PHASE2:Mm9::chr2:164479326..164479336,+#_006addc8dc83332a4f4d9db9adb060d7p@chr2:164479326..164479336, +
3.28e-58FFCP PHASE2:Mm9::chr9:100350777..100350782,+#_006addc8dc83332a4f4d9db9adb060d7p@chr9:100350777..100350782, +
3.28e-58FFCP PHASE1:Mm9::chr8:23057222..23057234,+#_006addc8dc83332a4f4d9db9adb060d7p1@Defb13
3.28e-58FFCP PHASE1:Mm9::chr7:31507623..31507631,+#_006addc8dc83332a4f4d9db9adb060d7p4@Atp4a
3.28e-58FFCP PHASE1:Mm9::chr1:155698166..155698174,-#_006addc8dc83332a4f4d9db9adb060d7p@chr1:155698166..155698174, -
3.28e-58FFCP PHASE2:Mm9::chr3:103650730..103650741,+#_006addc8dc83332a4f4d9db9adb060d7p@chr3:103650730..103650741, +
3.28e-58FFCP PHASE2:Mm9::chr5:66513886..66513897,-#_006addc8dc83332a4f4d9db9adb060d7p@chr5:66513886..66513897, -
3.28e-58FFCP PHASE1:Mm9::chr14:51677155..51677162,-#_006addc8dc83332a4f4d9db9adb060d7p5@Rnase12
3.28e-58FFCP PHASE1:Mm9::chr13:21378968..21378988,-#_006addc8dc83332a4f4d9db9adb060d7p@chr13:21378968..21378988, -
3.28e-58FFCP PHASE2:Mm9::chr17:35252614..35252635,-#_006addc8dc83332a4f4d9db9adb060d7p3@Ly6g5b
3.28e-58FFCP PHASE2:Mm9::chr7:105313229..105313234,-#_006addc8dc83332a4f4d9db9adb060d7p17@Capn5
3.28e-58FFCP PHASE2:Mm9::chr8:113585667..113585673,-#_006addc8dc83332a4f4d9db9adb060d7p@chr8:113585667..113585673, -
3.28e-58FFCP PHASE1:Mm9::chr2:152302768..152302774,+#_006addc8dc83332a4f4d9db9adb060d7p4@Defb20
3.28e-58FFCP PHASE2:Mm9::chr9:35651764..35651782,-#_006addc8dc83332a4f4d9db9adb060d7p2@9230110F15Rik
3.28e-58FFCP PHASE1:Mm9::chr11:101958876..101958883,+#_006addc8dc83332a4f4d9db9adb060d7p@chr11:101958876..101958883, +
3.28e-58FFCP PHASE1:Mm9::chr1:89597725..89597743,+#_006addc8dc83332a4f4d9db9adb060d7p@chr1:89597725..89597743, +
3.28e-58FFCP PHASE2:Mm9::chr2:25349402..25349409,-#_006addc8dc83332a4f4d9db9adb060d7p3@Lcn12
3.28e-58FFCP PHASE1:Mm9::chr7:151927980..151927988,+#_006addc8dc83332a4f4d9db9adb060d7p@chr7:151927980..151927988, +
3.28e-58FFCP PHASE2:Mm9::chr1:90155951..90155962,+#_006addc8dc83332a4f4d9db9adb060d7p@chr1:90155951..90155962, +
3.28e-58FFCP PHASE1:Mm9::chr18:46301295..46301302,-#_006addc8dc83332a4f4d9db9adb060d7p@chr18:46301295..46301302, -
3.28e-58FFCP PHASE2:Mm9::chr1:18213651..18213663,-#_006addc8dc83332a4f4d9db9adb060d7p1@Defb44-ps
3.28e-58FFCP PHASE1:Mm9::chr13:21378766..21378781,+#_006addc8dc83332a4f4d9db9adb060d7p@chr13:21378766..21378781, +
3.28e-58FFCP PHASE2:Mm9::chr14:51627586..51627595,+#_006addc8dc83332a4f4d9db9adb060d7p4@Rnase10
3.28e-58FFCP PHASE1:Mm9::chrX:50280126..50280140,+#_006addc8dc83332a4f4d9db9adb060d7p@chrX:50280126..50280140, +
3.28e-58FFCP PHASE1:Mm9::chr5:31379845..31379855,+#_006addc8dc83332a4f4d9db9adb060d7p@chr5:31379845..31379855, +
3.28e-58FFCP PHASE1:Mm9::chr2:164499572..164499580,-#_006addc8dc83332a4f4d9db9adb060d7p2@Wfdc11
3.28e-58FFCP PHASE2:Mm9::chr13:21379107..21379136,+#_006addc8dc83332a4f4d9db9adb060d7p@chr13:21379107..21379136, +
3.28e-58FFCP PHASE1:Mm9::chr15:75347689..75347703,+#_006addc8dc83332a4f4d9db9adb060d7p@chr15:75347689..75347703, +
3.28e-58FFCP PHASE1:Mm9::chr5:66513886..66513897,-#_006addc8dc83332a4f4d9db9adb060d7p@chr5:66513886..66513897, -
3.28e-58FFCP PHASE2:Mm9::chr11:59845349..59845371,-#_006addc8dc83332a4f4d9db9adb060d7p@chr11:59845349..59845371, -
3.28e-58FFCP PHASE1:Mm9::chr2:152302836..152302841,+#_006addc8dc83332a4f4d9db9adb060d7p6@Defb20
3.28e-58FFCP PHASE1:Mm9::chr14:63611214..63611229,+#_006addc8dc83332a4f4d9db9adb060d7p@chr14:63611214..63611229, +
3.28e-58FFCP PHASE1:Mm9::chr8:19141429..19141440,+#_006addc8dc83332a4f4d9db9adb060d7p@chr8:19141429..19141440, +
3.28e-58FFCP PHASE1:Mm9::chr2:25349488..25349492,-#_006addc8dc83332a4f4d9db9adb060d7p6@Lcn12
3.28e-58FFCP PHASE2:Mm9::chr12:110131571..110131579,-#_006addc8dc83332a4f4d9db9adb060d7p15@Wars
3.28e-58FFCP PHASE2:Mm9::chr10:28772042..28772046,-#_006addc8dc83332a4f4d9db9adb060d7p@chr10:28772042..28772046, -
3.28e-58FFCP PHASE1:Mm9::chr6:147624258..147624285,-#_006addc8dc83332a4f4d9db9adb060d7p@chr6:147624258..147624285, -
3.28e-58FFCP PHASE2:Mm9::chr8:19141371..19141383,+#_006addc8dc83332a4f4d9db9adb060d7p@chr8:19141371..19141383, +
3.28e-58FFCP PHASE2:Mm9::chr13:24270118..24270122,-#_006addc8dc83332a4f4d9db9adb060d7p@chr13:24270118..24270122, -
3.28e-58FFCP PHASE1:Mm9::chr11:34107562..34107572,-#_006addc8dc83332a4f4d9db9adb060d7p@chr11:34107562..34107572, -
3.28e-58FFCP PHASE1:Mm9::chr7:6204391..6204398,+#_006addc8dc83332a4f4d9db9adb060d7p2@Gm6792
3.28e-58FFCP PHASE2:Mm9::chr1:89597818..89597827,+#_006addc8dc83332a4f4d9db9adb060d7p@chr1:89597818..89597827, +
3.28e-58FFCP PHASE2:Mm9::chr5:110773731..110773753,+#_006addc8dc83332a4f4d9db9adb060d7p@chr5:110773731..110773753, +
3.28e-58FFCP PHASE2:Mm9::chr11:116901540..116901549,-#_006addc8dc83332a4f4d9db9adb060d7p4@uc007mmw.1
3.28e-58FFCP PHASE2:Mm9::chr4:150092027..150092070,-#_006addc8dc83332a4f4d9db9adb060d7p@chr4:150092027..150092070, -
3.28e-58FFCP PHASE2:Mm9::chr2:152302836..152302841,+#_006addc8dc83332a4f4d9db9adb060d7p6@Defb20
3.28e-58FFCP PHASE2:Mm9::chrX:164787162..164787188,-#_006addc8dc83332a4f4d9db9adb060d7p@chrX:164787162..164787188, -
3.28e-58FFCP PHASE1:Mm9::chr3:103650758..103650778,+#_006addc8dc83332a4f4d9db9adb060d7p@chr3:103650758..103650778, +
3.28e-58FFCP PHASE1:Mm9::chr19:17591760..17591765,+#_006addc8dc83332a4f4d9db9adb060d7p@chr19:17591760..17591765, +
3.28e-58FFCP PHASE1:Mm9::chr14:52542831..52542836,-#_006addc8dc83332a4f4d9db9adb060d7p4@Rnase13
3.28e-58FFCP PHASE2:Mm9::chr9:26610184..26610191,-#_006addc8dc83332a4f4d9db9adb060d7p4@Glb1l2
3.28e-58FFCP PHASE1:Mm9::chr13:21379306..21379315,-#_006addc8dc83332a4f4d9db9adb060d7p@chr13:21379306..21379315, -
3.28e-58FFCP PHASE2:Mm9::chr7:148445639..148445665,+#_006addc8dc83332a4f4d9db9adb060d7p@chr7:148445639..148445665, +
3.28e-58FFCP PHASE2:Mm9::chr14:51680551..51680555,-#_006addc8dc83332a4f4d9db9adb060d7p@chr14:51680551..51680555, -
3.28e-58FFCP PHASE1:Mm9::chr7:148445639..148445665,+#_006addc8dc83332a4f4d9db9adb060d7p@chr7:148445639..148445665, +
3.28e-58FFCP PHASE2:Mm9::chrX:12571771..12571780,-#_006addc8dc83332a4f4d9db9adb060d7p@chrX:12571771..12571780, -
3.28e-58FFCP PHASE2:Mm9::chr15:54678915..54678922,-#_006addc8dc83332a4f4d9db9adb060d7p@chr15:54678915..54678922, -
3.28e-58FFCP PHASE2:Mm9::chr5:31379454..31379466,+#_006addc8dc83332a4f4d9db9adb060d7p@chr5:31379454..31379466, +
3.28e-58FFCP PHASE1:Mm9::chrX:12571771..12571780,-#_006addc8dc83332a4f4d9db9adb060d7p@chrX:12571771..12571780, -
3.28e-58FFCP PHASE1:Mm9::chr16:25752228..25752237,+#_006addc8dc83332a4f4d9db9adb060d7p@chr16:25752228..25752237, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0009201&oldid=3277957"