DOID:0050686: Difference between revisions
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{{DOID | {{DOID | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by=snadendla | |created_by=snadendla | ||
| | |def="A cancer that is classified based on the organ it starts in." [url:http://cancerguide.org/basic.html] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=DOID:0050686 | |||
|is_a=DOID:162 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=organ system cancer | |||
|namespace=FANTOM | |||
|obo_creation_date=2011-06-13T03:28:33Z | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo | |property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref= | |||
}} | }} | ||
Latest revision as of 16:47, 12 September 2014
| Name: | organ system cancer |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A cancer that is classified based on the organ it starts in." [url:http://cancerguide.org/basic.html] |
| Created by: | snadendla |
| Creation date: | 2011-06-13T03:28:33Z |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:162(cancer) |
|---|
Children
| is a: | DOID:0050615 (respiratory system cancer),DOID:0060083 (immune system cancer),DOID:0060100 (musculoskeletal system cancer),DOID:0060122 (integumentary system cancer),DOID:170 (endocrine gland cancer),DOID:193 (reproductive organ cancer),DOID:3093 (nervous system cancer),DOID:3119 (gastrointestinal system cancer),DOID:3996 (urinary system cancer),DOID:5093 (thoracic cancer) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10399-106A3 (acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh))
- 10400-106A4 (acute myeloid leukemia (FAB M5) cell line:THP-1 (revived))
- 10405-106A9 (acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed))
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10409-106B4 (chronic myelogenous leukemia cell line:KU812)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10413-106B8 (glioma cell line:GI-1)
- 10414-106B9 (maxillary sinus tumor cell line:HSQ-89)
- 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
... further results Mouse (Mus musculus)
- 10399-106A3 (acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh))
- 10400-106A4 (acute myeloid leukemia (FAB M5) cell line:THP-1 (revived))
- 10405-106A9 (acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed))
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10409-106B4 (chronic myelogenous leukemia cell line:KU812)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10413-106B8 (glioma cell line:GI-1)
- 10414-106B9 (maxillary sinus tumor cell line:HSQ-89)
- 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:0050686 (organ system cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.38e-44 | FFCP PHASE1:Mm9::chr10:76688464..76688474,+#_65285b631ec8e691fc425814dcf2d967 | p@chr10:76688464..76688474, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chr11:102331415..102331424,-#_65285b631ec8e691fc425814dcf2d967 | p9@Itga2b |
| 5.38e-44 | FFCP PHASE2:Mm9::chr11:102331415..102331424,-#_65285b631ec8e691fc425814dcf2d967 | p9@Itga2b |
| 5.38e-44 | FFCP PHASE1:Mm9::chr1:180919481..180919491,-#_65285b631ec8e691fc425814dcf2d967 | p4@Smyd3 |
| 5.38e-44 | FFCP PHASE2:Mm9::chr10:76688454..76688462,+#_65285b631ec8e691fc425814dcf2d967 | p@chr10:76688454..76688462, + |
| 5.38e-44 | FFCP PHASE2:Mm9::chr1:180919481..180919491,-#_65285b631ec8e691fc425814dcf2d967 | p4@Smyd3 |
| 5.38e-44 | FFCP PHASE2:Mm9::chr10:76688464..76688474,+#_65285b631ec8e691fc425814dcf2d967 | p@chr10:76688464..76688474, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chr10:76688454..76688462,+#_65285b631ec8e691fc425814dcf2d967 | p@chr10:76688454..76688462, + |
| 7.84e-44 | FFCP PHASE1:Mm9::chr5:73305337..73305352,-#_692df3654ca27a8dd5299c8ed7b16e10 | p@chr5:73305337..73305352, - |
| 7.84e-44 | FFCP PHASE2:Mm9::chr5:73305337..73305352,-#_692df3654ca27a8dd5299c8ed7b16e10 | p@chr5:73305337..73305352, - |
| 4.79e-40 | FFCP PHASE2:Hg19::chr6:135513595..135513617,+#_ed865de4e8270344eabaddd1590e4f5d | p4@MYB |
| 4.79e-40 | FFCP PHASE1:Hg19::chr6:135513595..135513617,+#_ed865de4e8270344eabaddd1590e4f5d | p4@MYB |
| 4.3e-38 | FFCP PHASE2:Hg19::chr2:197504410..197504471,+#_ffbffa6d6a72381ab7b91b96b0a55359 | p1@CCDC150 |
| 4.3e-38 | FFCP PHASE1:Hg19::chr2:197504410..197504471,+#_ffbffa6d6a72381ab7b91b96b0a55359 | p1@CCDC150 |
| 7.41e-38 | FFCP PHASE1:Hg19::chr11:1372935..1372952,+#_8a80ee5033771369a6e0ad8692a57a1c | p@chr11:1372935..1372952, + |
| 7.41e-38 | FFCP PHASE2:Hg19::chr11:1372935..1372952,+#_8a80ee5033771369a6e0ad8692a57a1c | p@chr11:1372935..1372952, + |
| 2.52e-35 | FFCP PHASE1:Hg19::chrX:153991088..153991168,+#_1c5c0a174c081d5c665610633d5fdf02 | p1@DKC1 |
| 2.52e-35 | FFCP PHASE2:Hg19::chrX:153991088..153991168,+#_1c5c0a174c081d5c665610633d5fdf02 | p1@DKC1 |
| 1.76e-34 | FFCP PHASE1:Hg19::chr6:41513920..41513957,-#_06da1f80d7a37d2a8e3d7e6a717c7595 | p1@ENST00000414386 |
| 1.76e-34 | FFCP PHASE2:Hg19::chr6:41513920..41513957,-#_06da1f80d7a37d2a8e3d7e6a717c7595 | p1@ENST00000414386 |
| 4.66e-34 | FFCP PHASE2:Hg19::chr14:23120305..23120309,+#_1b72c822d2a7235e1ea2e9fbd6d67218 | p@chr14:23120305..23120309, + |
| 4.66e-34 | FFCP PHASE1:Hg19::chr14:23120305..23120309,+#_1b72c822d2a7235e1ea2e9fbd6d67218 | p@chr14:23120305..23120309, + |
| 1.36e-33 | FFCP PHASE1:Mm9::chr11:70246799..70246835,-#_1ce09872001252dca1a2235b12c6e8ba | p@chr11:70246799..70246835, - |
| 1.36e-33 | FFCP PHASE2:Mm9::chr11:70246799..70246835,-#_1ce09872001252dca1a2235b12c6e8ba | p@chr11:70246799..70246835, - |
| 2.03e-33 | FFCP PHASE1:Mm9::chr19:8798483..8798487,+#_5eb2fd793321ac0bee0ac8986210400e | p1@ENSMUST00000082787 |
| 2.03e-33 | FFCP PHASE2:Mm9::chr2:156853485..156853494,-#_5eb2fd793321ac0bee0ac8986210400e | p13@9830001H06Rik |
| 2.03e-33 | FFCP PHASE1:Mm9::chrX:160480258..160480272,-#_5eb2fd793321ac0bee0ac8986210400e | p@chrX:160480258..160480272, - |
| 2.03e-33 | FFCP PHASE2:Mm9::chrX:160480258..160480272,-#_5eb2fd793321ac0bee0ac8986210400e | p@chrX:160480258..160480272, - |
| 2.03e-33 | FFCP PHASE1:Mm9::chr2:156853485..156853494,-#_5eb2fd793321ac0bee0ac8986210400e | p13@9830001H06Rik |
| 2.03e-33 | FFCP PHASE2:Mm9::chr19:8798483..8798487,+#_5eb2fd793321ac0bee0ac8986210400e | p1@ENSMUST00000082787 |
| 2.62e-33 | FFCP PHASE1:Hg19::chr22:35627045..35627052,-#_61b3ebe3094780960c50cee7e9e36d6e | p1@ENST00000423311 |
| 2.62e-33 | FFCP PHASE2:Hg19::chr22:35627045..35627052,-#_61b3ebe3094780960c50cee7e9e36d6e | p1@ENST00000423311 |
| 3.55e-33 | FFCP PHASE2:Mm9::chr6:88785201..88785204,+#_d8b56478c34cacad67d52c59162772bf | p@chr6:88785201..88785204, + |
| 3.55e-33 | FFCP PHASE1:Mm9::chr6:88785201..88785204,+#_d8b56478c34cacad67d52c59162772bf | p@chr6:88785201..88785204, + |
| 4.33e-33 | FFCP PHASE2:Mm9::chr12:32681792..32681797,-#_0281bec43ce70fe4889c6a3a8609acce | p@chr12:32681792..32681797, - |
| 4.33e-33 | FFCP PHASE1:Mm9::chr12:32681792..32681797,-#_0281bec43ce70fe4889c6a3a8609acce | p@chr12:32681792..32681797, - |
| 4.33e-33 | FFCP PHASE1:Mm9::chr10:94309614..94309618,+#_0281bec43ce70fe4889c6a3a8609acce | p@chr10:94309614..94309618, + |
| 4.33e-33 | FFCP PHASE2:Mm9::chr10:94309614..94309618,+#_0281bec43ce70fe4889c6a3a8609acce | p@chr10:94309614..94309618, + |
| 5.3e-33 | FFCP PHASE2:Hg19::chr3:121264813..121264846,-#_8255802812d0270ace3de92af7817696 | p1@POLQ |
| 5.3e-33 | FFCP PHASE1:Hg19::chr3:121264813..121264846,-#_8255802812d0270ace3de92af7817696 | p1@POLQ |
| 5.56e-33 | FFCP PHASE2:Hg19::chr8:124408652..124408712,-#_d00b11a8edef26551750eaa512fe019c | p1@ATAD2 |
| 5.56e-33 | FFCP PHASE1:Hg19::chr8:124408652..124408712,-#_d00b11a8edef26551750eaa512fe019c | p1@ATAD2 |
| 6.96e-33 | FFCP PHASE2:Hg19::chr18:19192235..19192337,+#_ca9b966b07899bd7fb53e3b35305b862 | p1@SNRPD1 |
| 6.96e-33 | FFCP PHASE1:Hg19::chr18:19192235..19192337,+#_ca9b966b07899bd7fb53e3b35305b862 | p1@SNRPD1 |
| 2.93e-32 | FFCP PHASE1:Hg19::chr4:154265825..154265875,+#_9ac8fcdefc18be3500c030e58a78330a | p1@MND1 |
| 2.93e-32 | FFCP PHASE2:Hg19::chr4:154265825..154265875,+#_9ac8fcdefc18be3500c030e58a78330a | p1@MND1 |
| 8.35e-32 | FFCP PHASE2:Hg19::chr6:135533394..135533403,+#_9f829c22357e438ca6e62c2760691497 | p@chr6:135533394..135533403, + |
| 8.35e-32 | FFCP PHASE1:Hg19::chr6:135533394..135533403,+#_9f829c22357e438ca6e62c2760691497 | p@chr6:135533394..135533403, + |
| 1.02e-31 | FFCP PHASE2:Hg19::chr11:125495862..125495882,+#_c3eb4dbbd38174c485fe1eccf3a0a6be | p1@CHEK1 |
| 1.02e-31 | FFCP PHASE1:Hg19::chr11:125495862..125495882,+#_c3eb4dbbd38174c485fe1eccf3a0a6be | p1@CHEK1 |
| 1.35e-31 | FFCP PHASE1:Hg19::chrX:153991175..153991226,+#_10e3ca8bff31be45949587c957f6f80d | p2@DKC1 |
| 1.35e-31 | FFCP PHASE2:Hg19::chrX:153991175..153991226,+#_10e3ca8bff31be45949587c957f6f80d | p2@DKC1 |
| 2.12e-31 | FFCP PHASE2:Hg19::chr17:38574169..38574180,-#_92844aa3829cee8c596d9f02fece6218 | p2@TOP2A |
| 2.12e-31 | FFCP PHASE1:Hg19::chr17:38574169..38574180,-#_92844aa3829cee8c596d9f02fece6218 | p2@TOP2A |
| 2.29e-31 | FFCP PHASE2:Hg19::chr1:154947126..154947147,+#_268ecb80cbcbf09a077b87bd2c03bc35 | p2@CKS1B |
| 2.29e-31 | FFCP PHASE1:Hg19::chr1:154947126..154947147,+#_268ecb80cbcbf09a077b87bd2c03bc35 | p2@CKS1B |
| 2.82e-31 | FFCP PHASE2:Hg19::chr15:40453204..40453304,+#_e53cbafc8df2e5636b114fa96c46e46e | p1@BUB1B |
| 2.82e-31 | FFCP PHASE1:Hg19::chr15:40453204..40453304,+#_e53cbafc8df2e5636b114fa96c46e46e | p1@BUB1B |
| 3.73e-31 | FFCP PHASE2:Hg19::chr2:70529150..70529179,-#_ba0e0d38c9ba42da3d9baec6adada094 | p1@FAM136A |
| 3.73e-31 | FFCP PHASE1:Hg19::chr2:70529150..70529179,-#_ba0e0d38c9ba42da3d9baec6adada094 | p1@FAM136A |
| 4.02e-31 | FFCP PHASE2:Hg19::chr3:179280702..179280769,+#_513fffec3ea7750a37c11bb08b6c6582 | p1@ACTL6A |
| 4.02e-31 | FFCP PHASE1:Hg19::chr3:179280702..179280769,+#_513fffec3ea7750a37c11bb08b6c6582 | p1@ACTL6A |
| 4.81e-31 | FFCP PHASE1:Hg19::chr17:41393591..41393606,+#_654b400a2735702310dcc2dfb5657c3b | p@chr17:41393591..41393606, + |
| 4.81e-31 | FFCP PHASE2:Hg19::chr17:41393591..41393606,+#_654b400a2735702310dcc2dfb5657c3b | p@chr17:41393591..41393606, + |
| 1.26e-30 | FFCP PHASE1:Hg19::chr1:214776516..214776565,+#_a677ddc3db1a54571c6beaac689af18f | p1@CENPF |
| 1.26e-30 | FFCP PHASE2:Hg19::chr1:214776516..214776565,+#_a677ddc3db1a54571c6beaac689af18f | p1@CENPF |
| 1.44e-30 | FFCP PHASE2:Hg19::chr17:41277372..41277418,-#_2fddfddd419b2d6f6106fb406cd214e9 | p1@BRCA1 |
| 1.44e-30 | FFCP PHASE1:Hg19::chr17:41277372..41277418,-#_2fddfddd419b2d6f6106fb406cd214e9 | p1@BRCA1 |
| 1.59e-30 | FFCP PHASE2:Hg19::chr4:57301645..57301675,-#_0e4d027910a29ed530404658594af835 | p2@PPAT |
| 1.59e-30 | FFCP PHASE1:Hg19::chr4:57301645..57301675,-#_0e4d027910a29ed530404658594af835 | p2@PPAT |
| 1.99e-30 | FFCP PHASE2:Hg19::chr22:22901636..22901715,-#_f13d97b6742b34a17e98c6ab8ced2e6c | p1@PRAME |
| 1.99e-30 | FFCP PHASE1:Hg19::chr22:22901636..22901715,-#_f13d97b6742b34a17e98c6ab8ced2e6c | p1@PRAME |
| 2.37e-30 | FFCP PHASE2:Hg19::chr4:185655212..185655260,-#_e9cd57d633552c37406e9d0bb31f648d | p1@MLF1IP |
| 2.37e-30 | FFCP PHASE1:Hg19::chr4:185655212..185655260,-#_e9cd57d633552c37406e9d0bb31f648d | p1@MLF1IP |
| 2.72e-30 | FFCP PHASE2:Hg19::chr2:70529180..70529217,-#_8e0be7bd25fb47f538f26925905fbbe0 | p2@FAM136A |
| 2.72e-30 | FFCP PHASE1:Hg19::chr2:70529180..70529217,-#_8e0be7bd25fb47f538f26925905fbbe0 | p2@FAM136A |
| 3.23e-30 | FFCP PHASE1:Hg19::chr17:38574125..38574168,-#_f0a362f500013fb62301a13901bc45ad | p1@TOP2A |
| 3.23e-30 | FFCP PHASE2:Hg19::chr17:38574125..38574168,-#_f0a362f500013fb62301a13901bc45ad | p1@TOP2A |
| 3.86e-30 | FFCP PHASE2:Hg19::chr1:200589859..200589887,-#_880ce44e6f10e2ba2bff1b4af9152386 | p1@KIF14 |
| 3.86e-30 | FFCP PHASE1:Hg19::chr1:200589859..200589887,-#_880ce44e6f10e2ba2bff1b4af9152386 | p1@KIF14 |
| 4.12e-30 | FFCP PHASE2:Hg19::chr1:46713405..46713452,+#_5fa6a84caee6edd38ef67bf00e288123 | p1@RAD54L |
| 4.12e-30 | FFCP PHASE1:Hg19::chr1:46713405..46713452,+#_5fa6a84caee6edd38ef67bf00e288123 | p1@RAD54L |
| 6.66e-30 | FFCP PHASE2:Mm9::chr11:104171122..104171127,+#_2dbe02d97ddb9048aeba52fa04ae6158 | p@chr11:104171122..104171127, + |
| 6.66e-30 | FFCP PHASE1:Mm9::chr11:104171122..104171127,+#_2dbe02d97ddb9048aeba52fa04ae6158 | p@chr11:104171122..104171127, + |
| 7.27e-30 | FFCP PHASE1:Hg19::chr7:105162652..105162709,-#_9b66c6c4540d5ce1ff8804acfd5f8506 | p1@PUS7 |
| 7.27e-30 | FFCP PHASE2:Hg19::chr7:105162652..105162709,-#_9b66c6c4540d5ce1ff8804acfd5f8506 | p1@PUS7 |
| 1.83e-29 | FFCP PHASE2:Hg19::chr6:135502472..135502489,+#_9e9040d9604b80e2dc6b93b799617849 | p3@MYB |
| 1.83e-29 | FFCP PHASE1:Hg19::chr6:135502472..135502489,+#_9e9040d9604b80e2dc6b93b799617849 | p3@MYB |
| 1.97e-29 | FFCP PHASE2:Hg19::chr15:41672357..41672421,+#_587a38a7cddead91f8f0365c91964e87 | p@chr15:41672357..41672421, + |
| 1.97e-29 | FFCP PHASE1:Hg19::chr15:41672357..41672421,+#_587a38a7cddead91f8f0365c91964e87 | p@chr15:41672357..41672421, + |
| 2.03e-29 | FFCP PHASE2:Mm9::chr11:79436622..79436627,-#_fe06aa258f9ee5c87f22314813ed6676 | p1@Gm11202 |
| 2.03e-29 | FFCP PHASE1:Mm9::chr11:79436622..79436627,-#_fe06aa258f9ee5c87f22314813ed6676 | p1@Gm11202 |
| 2.34e-29 | FFCP PHASE2:Hg19::chr10:58120996..58121039,-#_be386d87003b552e631ec3f5c02d5824 | p1@ZWINT |
| 2.34e-29 | FFCP PHASE1:Hg19::chr10:58120996..58121039,-#_be386d87003b552e631ec3f5c02d5824 | p1@ZWINT |
| 2.62e-29 | FFCP PHASE1:Hg19::chr4:154265784..154265819,+#_6eab4cf42b85fc672bfdc11f454d4d4e | p2@MND1 |
| 2.62e-29 | FFCP PHASE2:Hg19::chr4:154265784..154265819,+#_6eab4cf42b85fc672bfdc11f454d4d4e | p2@MND1 |
| 2.69e-29 | FFCP PHASE1:Hg19::chr12:102514019..102514035,+#_9e31a9098b95749f7ab2336195c7d568 | p3@C12orf48 |
| 2.69e-29 | FFCP PHASE2:Hg19::chr12:102514019..102514035,+#_9e31a9098b95749f7ab2336195c7d568 | p3@C12orf48 |
| 2.75e-29 | FFCP PHASE2:Hg19::chr20:57617831..57617909,-#_34dd3003a516034e15fb4789c3fc8a80 | p1@SLMO2 |
| 2.75e-29 | FFCP PHASE1:Hg19::chr20:57617831..57617909,-#_34dd3003a516034e15fb4789c3fc8a80 | p1@SLMO2 |
