UBERON:0000055: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=compare with UBERON:0008782 | |comment=compare with UBERON:0008782 | ||
|created_by= | |created_by= | ||
| | |def="A tubular structure that contains, conveys body fluid, such as blood or lymph." [UBERON:cjm] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000055 | |||
|is_a=UBERON:0004111 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=vessel | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=grouping_class | ||
| | |synonym= | ||
|union_of= | |||
|xref= | |||
}} | }} | ||
Latest revision as of 17:04, 12 September 2014
| Name: | vessel |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A tubular structure that contains, conveys body fluid, such as blood or lymph." [UBERON:cjm] |
| Comments: | compare with UBERON:0008782 |
| Subset: | grouping_class |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004111(anatomical conduit) |
|---|
Children
| is a: | UBERON:0001473 (lymphatic vessel),UBERON:0001981 (blood vessel),UBERON:0005985 (coronary vessel),UBERON:0010523 (microcirculatory vessel),FF:10727-110A7 (lymphangiectasia cell line:DS-1) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10052-101G7 (aorta, adult, pool1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10727-110A7 (lymphangiectasia cell line:DS-1)
- 11207-116A1 (Endothelial Cells - Aortic, donor0)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11236-116D3 (Endothelial Cells - Lymphatic, donor1)
- 11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
- 11244-116E2 (Canine hepatocytes, donor1)
... further results Mouse (Mus musculus)
- 10052-101G7 (aorta, adult, pool1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10727-110A7 (lymphangiectasia cell line:DS-1)
- 11207-116A1 (Endothelial Cells - Aortic, donor0)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11236-116D3 (Endothelial Cells - Lymphatic, donor1)
- 11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
- 11244-116E2 (Canine hepatocytes, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000055 (vessel), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.16e-106 | FFCP PHASE2:Hg19::chr8:55370720..55370733,+#_b6911b2cf82d2c3d2d7150c24050886b | p2@SOX17 |
| 6.16e-106 | FFCP PHASE1:Hg19::chr8:55370720..55370733,+#_b6911b2cf82d2c3d2d7150c24050886b | p2@SOX17 |
| 3.3e-99 | FFCP PHASE2:Hg19::chr12:96830430..96830450,+#_5389fc50cfc899abf9212e9f300f9c86 | p@chr12:96830430..96830450, + |
| 3.3e-99 | FFCP PHASE1:Hg19::chr12:96830430..96830450,+#_5389fc50cfc899abf9212e9f300f9c86 | p@chr12:96830430..96830450, + |
| 1.55e-77 | FFCP PHASE2:Hg19::chr1:186946626..186946652,+#_97b3c738348d51c3252dd783bec5eb8a | p@chr1:186946626..186946652, + |
| 1.55e-77 | FFCP PHASE1:Hg19::chr1:186946626..186946652,+#_97b3c738348d51c3252dd783bec5eb8a | p@chr1:186946626..186946652, + |
| 3.41e-77 | FFCP PHASE2:Hg19::chr3:30334038..30334060,+#_cfb948ecf5cc22a01cb916c05ba7f6a4 | p@chr3:30334038..30334060, + |
| 3.41e-77 | FFCP PHASE1:Hg19::chr3:30334038..30334060,+#_cfb948ecf5cc22a01cb916c05ba7f6a4 | p@chr3:30334038..30334060, + |
| 1.09e-75 | FFCP PHASE2:Hg19::chr1:21606171..21606188,-#_eadd97b43ca0441c3bfb8011fb9c2528 | p10@ECE1 |
| 1.09e-75 | FFCP PHASE1:Hg19::chr1:21606171..21606188,-#_eadd97b43ca0441c3bfb8011fb9c2528 | p10@ECE1 |
| 9.71e-75 | FFCP PHASE2:Hg19::chr5:54281535..54281547,-#_9e11c27c76a33b462ff5c61c96dcc02a | p2@ESM1 |
| 9.71e-75 | FFCP PHASE1:Hg19::chr5:54281535..54281547,-#_9e11c27c76a33b462ff5c61c96dcc02a | p2@ESM1 |
| 1.05e-74 | FFCP PHASE2:Hg19::chr10:4823096..4823144,-#_3f847ba591f4776f10a6867cbb0180cd | p@chr10:4823096..4823144, - |
| 1.05e-74 | FFCP PHASE1:Hg19::chr10:4823096..4823144,-#_3f847ba591f4776f10a6867cbb0180cd | p@chr10:4823096..4823144, - |
| 3.82e-70 | FFCP PHASE2:Hg19::chr4:145567563..145567572,+#_57be5dc1fa1d97a1aac993fd21084bae | p8@HHIP |
| 3.82e-70 | FFCP PHASE1:Hg19::chr4:145567563..145567572,+#_57be5dc1fa1d97a1aac993fd21084bae | p8@HHIP |
| 5.4e-70 | FFCP PHASE2:Hg19::chr4:145566841..145566862,+#_f73763bd32336075e394ce95f0d1149b | p10@HHIP |
| 5.4e-70 | FFCP PHASE1:Hg19::chr4:145566841..145566862,+#_f73763bd32336075e394ce95f0d1149b | p10@HHIP |
| 1.65e-69 | FFCP PHASE1:Mm9::chr8:69221163..69221172,+#_2d4c68dae1522df7f642a7aaa29f213e | p6@Npy1r |
| 1.65e-69 | FFCP PHASE2:Mm9::chr8:69221163..69221172,+#_2d4c68dae1522df7f642a7aaa29f213e | p6@Npy1r |
| 2.92e-67 | FFCP PHASE2:Hg19::chr4:70653649..70653665,-#_93eb8dd4124228d17ee080d8fbca1f59 | p4@SULT1B1 |
| 2.92e-67 | FFCP PHASE1:Hg19::chr4:70653649..70653665,-#_93eb8dd4124228d17ee080d8fbca1f59 | p4@SULT1B1 |
| 2.14e-66 | FFCP PHASE2:Hg19::chr5:54281512..54281517,-#_4bae80c30bed24db523eab1211b148fc | p4@ESM1 |
| 2.14e-66 | FFCP PHASE1:Hg19::chr5:54281512..54281517,-#_4bae80c30bed24db523eab1211b148fc | p4@ESM1 |
| 3.26e-66 | FFCP PHASE2:Hg19::chr4:145567374..145567390,+#_e0d9c981f18bef5b0aeeadc62c6b2429 | p6@HHIP |
| 3.26e-66 | FFCP PHASE1:Hg19::chr4:145567374..145567390,+#_e0d9c981f18bef5b0aeeadc62c6b2429 | p6@HHIP |
| 7.72e-65 | FFCP PHASE1:Hg19::chr12:105863636..105863650,+#_c8186a97b1b4ca53f711ceaa706213e3 | p@chr12:105863636..105863650, + |
| 7.72e-65 | FFCP PHASE2:Hg19::chr12:105863636..105863650,+#_c8186a97b1b4ca53f711ceaa706213e3 | p@chr12:105863636..105863650, + |
| 1.17e-64 | FFCP PHASE1:Hg19::chr4:86700590..86700615,+#_31a3bc0e139770a02f8407099e6cf852 | p@chr4:86700590..86700615, + |
| 1.17e-64 | FFCP PHASE2:Hg19::chr4:86700590..86700615,+#_31a3bc0e139770a02f8407099e6cf852 | p@chr4:86700590..86700615, + |
| 5.08e-63 | FFCP PHASE2:Hg19::chr7:22629318..22629324,+#_36ce96d3f6bff385d0396af42d1a57a3 | p1@ENST00000439823 |
| 5.08e-63 | FFCP PHASE1:Hg19::chr7:22629318..22629324,+#_36ce96d3f6bff385d0396af42d1a57a3 | p1@ENST00000439823 |
| 1.37e-62 | FFCP PHASE1:Hg19::chr4:145567391..145567425,+#_b0cd51159aa57bede0dcd33536d205ed | p4@HHIP |
| 1.37e-62 | FFCP PHASE2:Hg19::chr4:145567391..145567425,+#_b0cd51159aa57bede0dcd33536d205ed | p4@HHIP |
| 2.83e-62 | FFCP PHASE1:Hg19::chr4:145567426..145567455,+#_4d922be1c855ffacff1f718983025840 | p5@HHIP |
| 2.83e-62 | FFCP PHASE2:Hg19::chr4:145567426..145567455,+#_4d922be1c855ffacff1f718983025840 | p5@HHIP |
| 3.19e-62 | FFCP PHASE1:Hg19::chr4:70653673..70653688,-#_48f49c7de0f1355fb61aa2a7b47bddea | p3@SULT1B1 |
| 3.19e-62 | FFCP PHASE2:Hg19::chr4:70653673..70653688,-#_48f49c7de0f1355fb61aa2a7b47bddea | p3@SULT1B1 |
| 3.45e-61 | FFCP PHASE1:Hg19::chr11:86649508..86649546,-#_390abea0edbc7f8539a8e8264fa4c153 | p@chr11:86649508..86649546, - |
| 3.45e-61 | FFCP PHASE2:Hg19::chr11:86649508..86649546,-#_390abea0edbc7f8539a8e8264fa4c153 | p@chr11:86649508..86649546, - |
| 3.83e-61 | FFCP PHASE2:Hg19::chr15:39423060..39423066,+#_1235459fb0106eb1a22c4f4333a18386 | p@chr15:39423060..39423066, + |
| 3.83e-61 | FFCP PHASE1:Hg19::chr15:39423060..39423066,+#_1235459fb0106eb1a22c4f4333a18386 | p@chr15:39423060..39423066, + |
| 7.04e-61 | FFCP PHASE2:Hg19::chr22:21138343..21138378,+#_087e3705a6995a5030380684e42b217f | p@chr22:21138343..21138378, + |
| 7.04e-61 | FFCP PHASE1:Hg19::chr22:21138343..21138378,+#_087e3705a6995a5030380684e42b217f | p@chr22:21138343..21138378, + |
| 1.05e-60 | FFCP PHASE2:Hg19::chr11:128562673..128562716,-#_7f8142887aed8b91ab59f122b9dea643 | p@chr11:128562673..128562716, - |
| 1.05e-60 | FFCP PHASE1:Hg19::chr11:128562673..128562716,-#_7f8142887aed8b91ab59f122b9dea643 | p@chr11:128562673..128562716, - |
| 1.2e-60 | FFCP PHASE1:Hg19::chr4:145567356..145567368,+#_f5d71908b67d085f831ed6554e8b88d9 | p7@HHIP |
| 1.2e-60 | FFCP PHASE2:Hg19::chr4:145567356..145567368,+#_f5d71908b67d085f831ed6554e8b88d9 | p7@HHIP |
| 5.81e-60 | FFCP PHASE1:Hg19::chr12:105863654..105863682,+#_28dd547eca8f9166992d752e5608e3f2 | p@chr12:105863654..105863682, + |
| 5.81e-60 | FFCP PHASE2:Hg19::chr12:105863654..105863682,+#_28dd547eca8f9166992d752e5608e3f2 | p@chr12:105863654..105863682, + |
| 5.59e-59 | FFCP PHASE2:Hg19::chr14:63671393..63671437,+#_0945970dd7ed06138c68ff866e2c51d9 | p2@RHOJ |
| 5.59e-59 | FFCP PHASE1:Hg19::chr14:63671393..63671437,+#_0945970dd7ed06138c68ff866e2c51d9 | p2@RHOJ |
| 9.44e-58 | FFCP PHASE2:Hg19::chr11:102667477..102667490,-#_17016c51f25d33ca474853735e3d6e34 | p@chr11:102667477..102667490, - |
| 9.44e-58 | FFCP PHASE1:Hg19::chr11:102667477..102667490,-#_17016c51f25d33ca474853735e3d6e34 | p@chr11:102667477..102667490, - |
| 1.25e-57 | FFCP PHASE2:Hg19::chr11:102668200..102668228,-#_ef74040e7cfc4d53c66c292a1b5785f1 | p4@MMP1 |
| 1.25e-57 | FFCP PHASE1:Hg19::chr11:102668200..102668228,-#_ef74040e7cfc4d53c66c292a1b5785f1 | p4@MMP1 |
| 7.55e-57 | FFCP PHASE2:Hg19::chr2:56216687..56216727,-#_7bf5f9ddaeed5cc4c5b5104812814a2c | p1@MIR216A |
| 7.55e-57 | FFCP PHASE1:Hg19::chr2:56216687..56216727,-#_7bf5f9ddaeed5cc4c5b5104812814a2c | p1@MIR216A |
| 2.83e-56 | FFCP PHASE2:Hg19::chr11:128563283..128563297,-#_a2f0acef94903e9c8fcec71e08245948 | p@chr11:128563283..128563297, - |
| 2.83e-56 | FFCP PHASE1:Hg19::chr11:128563283..128563297,-#_a2f0acef94903e9c8fcec71e08245948 | p@chr11:128563283..128563297, - |
| 3.62e-56 | FFCP PHASE1:Hg19::chr11:102668074..102668126,-#_28ff0e58c8faf9dc7aae5b2064dd605c | p3@MMP1 |
| 3.62e-56 | FFCP PHASE2:Hg19::chr11:102668074..102668126,-#_28ff0e58c8faf9dc7aae5b2064dd605c | p3@MMP1 |
| 4.2e-56 | FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_a9dddc4fd82b4215aa53c3d02dceb0fe | p4@Il6st |
| 4.2e-56 | FFCP PHASE1:Mm9::chr8:69221150..69221161,+#_a9dddc4fd82b4215aa53c3d02dceb0fe | p5@Npy1r |
| 4.2e-56 | FFCP PHASE2:Mm9::chr8:69221150..69221161,+#_a9dddc4fd82b4215aa53c3d02dceb0fe | p5@Npy1r |
| 4.2e-56 | FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_a9dddc4fd82b4215aa53c3d02dceb0fe | p4@Il6st |
| 1.11e-55 | FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_6e9a81bb8fcb60c6e9eedd0159034729 | p@chr2:65009852..65009866, - |
| 1.11e-55 | FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_6e9a81bb8fcb60c6e9eedd0159034729 | p@chr2:65009852..65009866, - |
| 1.22e-55 | FFCP PHASE2:Hg19::chr6:3753188..3753192,-#_9c956950fca3e26055eaa541d8a5b347 | p@chr6:3753188..3753192, - |
| 1.22e-55 | FFCP PHASE1:Hg19::chr6:3753188..3753192,-#_9c956950fca3e26055eaa541d8a5b347 | p@chr6:3753188..3753192, - |
| 2.29e-55 | FFCP PHASE1:Hg19::chr5:141060389..141060439,-#_62392b05d277bc46c58e4ef3b3e8e985 | p3@ARAP3 |
| 2.29e-55 | FFCP PHASE2:Hg19::chr5:141060389..141060439,-#_62392b05d277bc46c58e4ef3b3e8e985 | p3@ARAP3 |
| 5.64e-55 | FFCP PHASE2:Hg19::chr15:39542867..39542890,+#_8fd1e9bb405782f4aafafdfc346e2e34 | p1@C15orf54 |
| 5.64e-55 | FFCP PHASE1:Hg19::chr15:39542867..39542890,+#_8fd1e9bb405782f4aafafdfc346e2e34 | p1@C15orf54 |
| 1.51e-54 | FFCP PHASE1:Hg19::chr22:50553000..50553012,+#_149f2d45321aeaac53815afd01ca86d1 | p2@MOV10L1 |
| 1.51e-54 | FFCP PHASE2:Hg19::chr22:50553000..50553012,+#_149f2d45321aeaac53815afd01ca86d1 | p2@MOV10L1 |
| 2.76e-54 | FFCP PHASE1:Hg19::chr11:124761247..124761258,-#_d17e77776e7e5d71881855bd8efcc8dd | p@chr11:124761247..124761258, - |
| 2.76e-54 | FFCP PHASE2:Hg19::chr11:124761247..124761258,-#_d17e77776e7e5d71881855bd8efcc8dd | p@chr11:124761247..124761258, - |
| 3.95e-54 | FFCP PHASE2:Hg19::chr11:102662162..102662217,-#_84b603971fbf7372572d77ebc657cf30 | p@chr11:102662162..102662217, - |
| 3.95e-54 | FFCP PHASE1:Hg19::chr11:102662162..102662217,-#_84b603971fbf7372572d77ebc657cf30 | p@chr11:102662162..102662217, - |
| 4.47e-54 | FFCP PHASE1:Hg19::chr2:202563351..202563376,-#_3451a0846231749ce8fae1506e437d40 | p1@MPP4 |
| 4.47e-54 | FFCP PHASE2:Hg19::chr2:202563351..202563376,-#_3451a0846231749ce8fae1506e437d40 | p1@MPP4 |
| 1.54e-53 | FFCP PHASE1:Hg19::chr4:145567461..145567482,+#_bcce46dd58e5dd9c5b2c52e6db286e50 | p9@HHIP |
| 1.54e-53 | FFCP PHASE2:Hg19::chr4:145567461..145567482,+#_bcce46dd58e5dd9c5b2c52e6db286e50 | p9@HHIP |
| 1.66e-53 | FFCP PHASE1:Hg19::chr22:21138313..21138336,+#_af23a57aa0c6f2153ce85bb2085c7b20 | p@chr22:21138313..21138336, + |
| 1.66e-53 | FFCP PHASE2:Hg19::chr22:21138313..21138336,+#_af23a57aa0c6f2153ce85bb2085c7b20 | p@chr22:21138313..21138336, + |
| 2.05e-53 | FFCP PHASE1:Hg19::chr3:149258838..149258848,-#_5391e13cb531c5ef80142065e9f6de32 | p24@WWTR1 |
| 2.05e-53 | FFCP PHASE2:Hg19::chr3:149258838..149258848,-#_5391e13cb531c5ef80142065e9f6de32 | p24@WWTR1 |
| 3.99e-53 | FFCP PHASE1:Hg19::chr11:102668178..102668206,+#_e0b1d4073af4852f4d735abc4c0a292f | p@chr11:102668178..102668206, + |
| 3.99e-53 | FFCP PHASE2:Hg19::chr11:102668178..102668206,+#_e0b1d4073af4852f4d735abc4c0a292f | p@chr11:102668178..102668206, + |
| 4.37e-53 | FFCP PHASE2:Hg19::chr18:33046982..33046991,-#_d8e135e4f6e9ca1f4d41390048b85f07 | p@chr18:33046982..33046991, - |
| 4.37e-53 | FFCP PHASE1:Hg19::chr18:33046982..33046991,-#_d8e135e4f6e9ca1f4d41390048b85f07 | p@chr18:33046982..33046991, - |
| 1.15e-52 | FFCP PHASE2:Hg19::chrX:15518894..15518905,+#_83db9083046e67f5317d674763ddf21a | p2@BMX |
| 1.15e-52 | FFCP PHASE1:Hg19::chrX:15518894..15518905,+#_83db9083046e67f5317d674763ddf21a | p2@BMX |
| 1.64e-52 | FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_56dc5136c01d1187bd6b579b2accc94f | p@chr2:178190171..178190178, + |
| 1.64e-52 | FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_56dc5136c01d1187bd6b579b2accc94f | p@chrX:160839744..160839754, + |
| 1.64e-52 | FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_56dc5136c01d1187bd6b579b2accc94f | p@chr8:69228447..69228492, + |
| 1.64e-52 | FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_56dc5136c01d1187bd6b579b2accc94f | p@chr8:69228447..69228492, + |
| 1.64e-52 | FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_56dc5136c01d1187bd6b579b2accc94f | p@chr2:178190171..178190178, + |
| 1.64e-52 | FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_56dc5136c01d1187bd6b579b2accc94f | p@chr17:14827154..14827169, - |
