UBERON:0001601: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:0006229;;UBERON:FMA_49033-MA_0000271 | ||
|anatomical_img_id=FMA:49033 | |||
| | |||
|comment=AO notes: BTO and MA consider this part of the eye; we follow them here (inferred from skeletal muscle). Not clear if omission from FMA is deliberate. Editor notes: todo - resolve discrepancies in which muscles are considered extra-ocular. Taxon notes: Mammals have 7 extra-ocular muscles, but humans lack the M. retractor bulbi. Note in ZFA this is the set of muscles. | |comment=AO notes: BTO and MA consider this part of the eye; we follow them here (inferred from skeletal muscle). Not clear if omission from FMA is deliberate. Editor notes: todo - resolve discrepancies in which muscles are considered extra-ocular. Taxon notes: Mammals have 7 extra-ocular muscles, but humans lack the M. retractor bulbi. Note in ZFA this is the set of muscles. | ||
|created_by= | |created_by= | ||
| | |def="Skeletal muscle derived from cranial mesoderm and controls eye movements." [GO:0002074, Wikipedia:Extraocular_muscles] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0006230 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001601 | |||
|is_a=UBERON:0004120 ;;UBERON:0004277 ;;UBERON:0010313 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=extra-ocular muscle | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0003269 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Muscles surrounding the eye (bulbus oculi) and having an effect on eye movements.[AAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Muscles surrounding the eye (bulbus oculi) and having an effect on eye movements.[AAO]" xsd:string | ||
| | |subset=uberon_slim;;vertebrate_core | ||
| | |synonym="extra-ocular skeletal muscle" EXACT [];;"extraocular muscle" EXACT [FMA:49033];;"extraocular musculature" EXACT [ZFA:0000511];;"extraocular skeletal muscle" EXACT [MA:0001271];;"extrinsic eye muscle" EXACT [Obol:automatic];;"extrinsic muscle of eyeball" EXACT [FMA:49033];;"extrinsic ocular muscle" EXACT [EHDAA2:0000482];;"musculi externi bulbi oculi" RELATED LATIN [Wikipedia:Extraocular_muscles] | ||
|union_of= | |||
|xref=AAO:0010028;;BTO:0001579;;EFO:0001921;;EHDAA2:0000482;;EHDAA:5729;;EMAPA:18234;;FMA:49033;;http://upload.wikimedia.org/wikipedia/commons/6/61/MRI_of_human_eye.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/MRI_of_human_eye.jpg/200px-MRI_of_human_eye.jpg;;MA:0001271;;SCTID:181150000;;TAO:0000511;;VHOG:0000549;;ZFA:0000511 | |||
}} | }} | ||
Latest revision as of 17:19, 12 September 2014
| Name: | extra-ocular muscle | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Skeletal muscle derived from cranial mesoderm and controls eye movements." [GO:0002074, Wikipedia:Extraocular_muscles] | ||
| Xrefs: |
| ||
| Synonyms: |
"extra-ocular skeletal muscle" EXACT [] "extraocular muscle" EXACT [FMA:49033] "extraocular musculature" EXACT [ZFA:0000511] "extraocular skeletal muscle" EXACT [MA:0001271] "extrinsic eye muscle" EXACT [Obol:automatic] "extrinsic muscle of eyeball" EXACT [FMA:49033] "extrinsic ocular muscle" EXACT [EHDAA2:0000482] "musculi externi bulbi oculi" RELATED LATIN [Wikipedia:Extraocular_muscles] | ||
| Comments: | AO notes: BTO and MA consider this part of the eye; we follow them here (inferred from skeletal muscle). Not clear if omission from FMA is deliberate. Editor notes: todo - resolve discrepancies in which muscles are considered extra-ocular. Taxon notes: Mammals have 7 extra-ocular muscles, but humans lack the M. retractor bulbi. Note in ZFA this is the set of muscles. | ||
| Alt_id: |
UBERON:0006229 UBERON:FMA_49033-MA_0000271 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004120(mesoderm-derived structure),UBERON:0004277(eye muscle),UBERON:0010313(neural crest-derived structure) |
|---|---|
| develops_from: | UBERON:0006230(extrinsic ocular pre-muscle mass) |
| part_of: | UBERON:0003269(skeletal muscle tissue of eye) |
Children
| is a: | UBERON:0006531 (oculomotor muscle) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10300-104H3
- 10328-105B4
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001601 (extra-ocular muscle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
Property "Property value" (as page type) with input value "UBPROP:0000001 "Muscles surrounding the eye (bulbus oculi) and having an effect on eye movements.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
