Personal tools

UBERON:0001992: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0001992
|alt_id=UBERON:FMA_64776-MA_0000800
|name=papillary layer of dermis
|namespace=
|def="Dense irregular connective tissue of the skin that consists of fibroblasts, various connective tissue cell types, and collagen, predominantly type III.[FMA]" [FMA:FMA, Wikipedia:Papillary_dermis]
|xref=FMA:64776;;http://upload.wikimedia.org/wikipedia/commons/b/b4/Normal_Epidermis_and_Dermis_with_Intradermal_Nevus_10x.JPG;;MA:0000800;;MA:0000802;;ncithesaurus:Papillary_Dermis;;ncithesaurus:Stratum_Papillare
|is_a=UBERON:0004120;;UBERON:0004923
|synonym="corpus papillary" EXACT [MP:0009545];;"dermis papillary layer" EXACT [MA:0000800];;"papillary dermis" EXACT [];;"papillary layer" EXACT [MP:0009545];;"papillary layer of dermis" EXACT [FMA:64776];;"stratum papillare" EXACT [MP:0009545];;"stratum papillare" RELATED LATIN [Wikipedia:Papillary_dermis];;"stratum papillare corii" EXACT [MP:0009545];;"superficial dermis" EXACT [MA:0000802];;"superficial dermis" EXACT [MP:0009545]
|comment=AO notes: check AO
|comment=AO notes: check AO
|alt_id=UBERON:FMA_64776-MA_0000800
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Dense irregular connective tissue of the skin that consists of fibroblasts, various connective tissue cell types, and collagen, predominantly type III.[FMA]" [FMA:FMA, Wikipedia:Papillary_dermis]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001992
|is_a=UBERON:0004120 ;;UBERON:0004121 ;;UBERON:0013754
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=papillary layer of dermis
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002067
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="corpus papillary" EXACT [MP:0009545];;"dermis papillary layer" EXACT [MA:0000800];;"papillary dermis" EXACT [];;"papillary layer" EXACT [MP:0009545];;"papillary layer of dermis" EXACT [FMA:64776];;"stratum papillare" EXACT [MP:0009545];;"stratum papillare" RELATED LATIN [Wikipedia:Papillary_dermis];;"stratum papillare corii" EXACT [MP:0009545];;"superficial dermis" EXACT [MA:0000802];;"superficial dermis" EXACT [MP:0009545]
|union_of=
|xref=FMA:64776;;http://upload.wikimedia.org/wikipedia/commons/b/b4/Normal_Epidermis_and_Dermis_with_Intradermal_Nevus_10x.JPG;;MA:0000800;;MA:0000802;;ncithesaurus:Papillary_Dermis;;ncithesaurus:Stratum_Papillare
}}
}}

Latest revision as of 17:23, 12 September 2014

Name:papillary layer of dermis
Namespace:FANTOM
Definition:"Dense irregular connective tissue of the skin that consists of fibroblasts, various connective tissue cell types, and collagen, predominantly type III.[FMA]" [FMA:FMA, Wikipedia:Papillary_dermis]
Xrefs:
links:

FMA:64776
[1]
MA:0000800
MA:0000802
ncithesaurus:Papillary_Dermis

ncithesaurus:Stratum_Papillare
Synonyms: "corpus papillary" EXACT [MP:0009545]
"dermis papillary layer" EXACT [MA:0000800]
"papillary dermis" EXACT []
"papillary layer" EXACT [MP:0009545]
"papillary layer of dermis" EXACT [FMA:64776]
"stratum papillare" EXACT [MP:0009545]
"stratum papillare" RELATED LATIN [Wikipedia:Papillary_dermis]
"stratum papillare corii" EXACT [MP:0009545]
"superficial dermis" EXACT [MA:0000802]
"superficial dermis" EXACT [MP:0009545]
Comments:AO notes: check AO
Alt_id: UBERON:FMA_64776-MA_0000800
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004120(mesoderm-derived structure),UBERON:0004121(ectoderm-derived structure),UBERON:0013754(integumentary system layer)
part_of:UBERON:0002067(dermis)



Children

part of:UBERON:0000412 (dermal papilla)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11271-116H2 (Hair Follicle Dermal Papilla Cells, donor1)
  • 11348-117G7 (Hair Follicle Dermal Papilla Cells, donor2)
  • 11420-118F7 (Hair Follicle Dermal Papilla Cells, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001992 (papillary layer of dermis), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.39e-66FFCP PHASE2:Hg19::chr7:127963997..127964004,-#_96fa2d11aac03bbe1a79e1e23dba2358p@chr7:127963997..127964004, -
2.39e-66FFCP PHASE1:Hg19::chr7:127963997..127964004,-#_96fa2d11aac03bbe1a79e1e23dba2358p@chr7:127963997..127964004, -
4.68e-66FFCP PHASE2:Hg19::chr16:85617034..85617043,-#_002ea0438f793784487eb91862c7e683p@chr16:85617034..85617043, -
4.68e-66FFCP PHASE1:Hg19::chr16:85617034..85617043,-#_002ea0438f793784487eb91862c7e683p@chr16:85617034..85617043, -
6.53e-66FFCP PHASE1:Hg19::chr5:174252850..174252859,+#_46c3b6fcac20bd68731dc1524e5d3e68p@chr5:174252850..174252859, +
6.53e-66FFCP PHASE2:Hg19::chr5:174252850..174252859,+#_46c3b6fcac20bd68731dc1524e5d3e68p@chr5:174252850..174252859, +
1.33e-60FFCP PHASE1:Hg19::chr20:940152..940156,-#_296ba2e7f9c6b253e8f19762ab0602b4p@chr20:940152..940156, -
1.33e-60FFCP PHASE2:Hg19::chr20:940152..940156,-#_296ba2e7f9c6b253e8f19762ab0602b4p@chr20:940152..940156, -
9.99e-60FFCP PHASE2:Hg19::chr1:119530682..119530692,-#_a2531cf1f25857308842f378cab6ab80p10@TBX15
9.99e-60FFCP PHASE1:Hg19::chr1:119530682..119530692,-#_a2531cf1f25857308842f378cab6ab80p10@TBX15
1.83e-59FFCP PHASE2:Hg19::chr17:73682761..73682766,+#_3e8ff7711f108fb28558181a55d635b5p@chr17:73682761..73682766, +
1.83e-59FFCP PHASE1:Hg19::chr17:73682761..73682766,+#_3e8ff7711f108fb28558181a55d635b5p@chr17:73682761..73682766, +
2.87e-53FFCP PHASE1:Hg19::chr12:5198401..5198415,+#_614fe9448c05713cbbcf281e525574d8p@chr12:5198401..5198415, +
2.87e-53FFCP PHASE2:Hg19::chr12:2163623..2163634,+#_614fe9448c05713cbbcf281e525574d8p@chr12:2163623..2163634, +
2.87e-53FFCP PHASE1:Hg19::chr12:2163623..2163634,+#_614fe9448c05713cbbcf281e525574d8p@chr12:2163623..2163634, +
2.87e-53FFCP PHASE2:Hg19::chr12:5198401..5198415,+#_614fe9448c05713cbbcf281e525574d8p@chr12:5198401..5198415, +
1.22e-44FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_48af02e88c6a13d9458d582a501cc39bp@chr10:15760985..15760992, -
1.22e-44FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_48af02e88c6a13d9458d582a501cc39bp@chr10:15760985..15760992, -
1.22e-44FFCP PHASE2:Hg19::chr16:85617044..85617059,-#_48af02e88c6a13d9458d582a501cc39bp@chr16:85617044..85617059, -
1.22e-44FFCP PHASE1:Hg19::chr16:85617044..85617059,-#_48af02e88c6a13d9458d582a501cc39bp@chr16:85617044..85617059, -
1.01e-38FFCP PHASE2:Hg19::chr15:39534820..39534834,+#_bda46fdf9cfe48c6dc377f3316a5eeefp@chr15:39534820..39534834, +
1.01e-38FFCP PHASE1:Hg19::chr15:39534820..39534834,+#_bda46fdf9cfe48c6dc377f3316a5eeefp@chr15:39534820..39534834, +
2.18e-38FFCP PHASE1:Hg19::chr3:147109858..147109861,+#_d1855d975bfa5d0f4249506b181c5892p@chr3:147109858..147109861, +
2.18e-38FFCP PHASE2:Hg19::chr3:147109858..147109861,+#_d1855d975bfa5d0f4249506b181c5892p@chr3:147109858..147109861, +
2.64e-38FFCP PHASE1:Hg19::chr3:147128048..147128057,+#_911bcea487efbea932efc01bb6650eabp4@AB464362
2.64e-38FFCP PHASE2:Hg19::chr3:147128048..147128057,+#_911bcea487efbea932efc01bb6650eabp4@AB464362
2.7e-38FFCP PHASE1:Hg19::chr3:147112699..147112713,-#_e13799eecc6c7fec1a9ac6312c192df7p@chr3:147112699..147112713, -
2.7e-38FFCP PHASE2:Hg19::chr3:147112699..147112713,-#_e13799eecc6c7fec1a9ac6312c192df7p@chr3:147112699..147112713, -
4.48e-38FFCP PHASE1:Hg19::chr21:47405885..47405896,+#_1d8fede39e520da706b9ad2791e4882ep@chr21:47405885..47405896, +
4.48e-38FFCP PHASE2:Hg19::chr21:47405885..47405896,+#_1d8fede39e520da706b9ad2791e4882ep@chr21:47405885..47405896, +
8.41e-38FFCP PHASE2:Hg19::chr15:80800274..80800278,-#_46b424b6560c6b70bb697864da46cec6p@chr15:80800274..80800278, -
8.41e-38FFCP PHASE1:Hg19::chr15:80800274..80800278,-#_46b424b6560c6b70bb697864da46cec6p@chr15:80800274..80800278, -
5.51e-34FFCP PHASE2:Hg19::chr17:38174999..38175001,+#_58e1a4806f2b152f0352bd59c82aa0cep8@CASC3
5.51e-34FFCP PHASE2:Hg19::chr2:235904638..235904641,-#_58e1a4806f2b152f0352bd59c82aa0cep@chr2:235904638..235904641, -
5.51e-34FFCP PHASE1:Hg19::chr2:235904638..235904641,-#_58e1a4806f2b152f0352bd59c82aa0cep@chr2:235904638..235904641, -
5.51e-34FFCP PHASE1:Hg19::chr17:38174999..38175001,+#_58e1a4806f2b152f0352bd59c82aa0cep8@CASC3
5.96e-34FFCP PHASE2:Hg19::chr9:3330877..3330914,-#_99acfb1f9d5729cb9b065fa37c86f192p@chr9:3330877..3330914, -
5.96e-34FFCP PHASE2:Hg19::chr11:6341147..6341156,-#_99acfb1f9d5729cb9b065fa37c86f192p14@PRKCDBP
5.96e-34FFCP PHASE2:Hg19::chr5:53358788..53358795,-#_99acfb1f9d5729cb9b065fa37c86f192p@chr5:53358788..53358795, -
5.96e-34FFCP PHASE2:Hg19::chr20:55403726..55403730,+#_99acfb1f9d5729cb9b065fa37c86f192p@chr20:55403726..55403730, +
5.96e-34FFCP PHASE2:Hg19::chr8:23210765..23210805,+#_99acfb1f9d5729cb9b065fa37c86f192p@chr8:23210765..23210805, +
5.96e-34FFCP PHASE1:Hg19::chr9:3330877..3330914,-#_99acfb1f9d5729cb9b065fa37c86f192p@chr9:3330877..3330914, -
5.96e-34FFCP PHASE1:Hg19::chr13:114108115..114108122,-#_99acfb1f9d5729cb9b065fa37c86f192p13@ADPRHL1
5.96e-34FFCP PHASE2:Hg19::chr10:90750010..90750015,+#_99acfb1f9d5729cb9b065fa37c86f192p15@FAS
5.96e-34FFCP PHASE1:Hg19::chr20:55403726..55403730,+#_99acfb1f9d5729cb9b065fa37c86f192p@chr20:55403726..55403730, +
5.96e-34FFCP PHASE2:Hg19::chr15:40773537..40773544,-#_99acfb1f9d5729cb9b065fa37c86f192p1@ENST00000489027
5.96e-34FFCP PHASE2:Hg19::chr6:26305727..26305730,-#_99acfb1f9d5729cb9b065fa37c86f192p@chr6:26305727..26305730, -
5.96e-34FFCP PHASE1:Hg19::chr6:26305727..26305730,-#_99acfb1f9d5729cb9b065fa37c86f192p@chr6:26305727..26305730, -
5.96e-34FFCP PHASE2:Hg19::chr5:150398982..150399013,-#_99acfb1f9d5729cb9b065fa37c86f192p@chr5:150398982..150399013, -
5.96e-34FFCP PHASE1:Hg19::chr13:30075330..30075333,+#_99acfb1f9d5729cb9b065fa37c86f192p@chr13:30075330..30075333, +
5.96e-34FFCP PHASE1:Hg19::chr11:6341147..6341156,-#_99acfb1f9d5729cb9b065fa37c86f192p14@PRKCDBP
5.96e-34FFCP PHASE2:Hg19::chr9:88939319..88939326,-#_99acfb1f9d5729cb9b065fa37c86f192p25@ZCCHC6
5.96e-34FFCP PHASE1:Hg19::chr5:150398982..150399013,-#_99acfb1f9d5729cb9b065fa37c86f192p@chr5:150398982..150399013, -
5.96e-34FFCP PHASE1:Hg19::chr12:69754026..69754035,+#_99acfb1f9d5729cb9b065fa37c86f192p@chr12:69754026..69754035, +
5.96e-34FFCP PHASE1:Hg19::chr10:90750010..90750015,+#_99acfb1f9d5729cb9b065fa37c86f192p15@FAS
5.96e-34FFCP PHASE1:Hg19::chr6:168333065..168333071,+#_99acfb1f9d5729cb9b065fa37c86f192p33@MLLT4
5.96e-34FFCP PHASE1:Hg19::chr9:88939319..88939326,-#_99acfb1f9d5729cb9b065fa37c86f192p25@ZCCHC6
5.96e-34FFCP PHASE1:Hg19::chr15:40773537..40773544,-#_99acfb1f9d5729cb9b065fa37c86f192p1@ENST00000489027
5.96e-34FFCP PHASE2:Hg19::chr7:93928562..93928567,+#_99acfb1f9d5729cb9b065fa37c86f192p@chr7:93928562..93928567, +
5.96e-34FFCP PHASE1:Hg19::chr13:45914842..45914847,-#_99acfb1f9d5729cb9b065fa37c86f192p14@TPT1
5.96e-34FFCP PHASE2:Hg19::chr6:168333065..168333071,+#_99acfb1f9d5729cb9b065fa37c86f192p33@MLLT4
5.96e-34FFCP PHASE1:Hg19::chr7:93928562..93928567,+#_99acfb1f9d5729cb9b065fa37c86f192p@chr7:93928562..93928567, +
5.96e-34FFCP PHASE2:Hg19::chr13:50654430..50654438,+#_99acfb1f9d5729cb9b065fa37c86f192p@chr13:50654430..50654438, +
5.96e-34FFCP PHASE2:Hg19::chr11:118789349..118789355,+#_99acfb1f9d5729cb9b065fa37c86f192p@chr11:118789349..118789355, +
5.96e-34FFCP PHASE2:Hg19::chr9:35748867..35748868,-#_99acfb1f9d5729cb9b065fa37c86f192p13@GBA2
5.96e-34FFCP PHASE1:Hg19::chr3:124485247..124485272,-#_99acfb1f9d5729cb9b065fa37c86f192p@chr3:124485247..124485272, -
5.96e-34FFCP PHASE2:Hg19::chr13:114108115..114108122,-#_99acfb1f9d5729cb9b065fa37c86f192p13@ADPRHL1
5.96e-34FFCP PHASE1:Hg19::chr9:35748867..35748868,-#_99acfb1f9d5729cb9b065fa37c86f192p13@GBA2
5.96e-34FFCP PHASE1:Hg19::chr11:118789349..118789355,+#_99acfb1f9d5729cb9b065fa37c86f192p@chr11:118789349..118789355, +
5.96e-34FFCP PHASE2:Hg19::chr3:124485247..124485272,-#_99acfb1f9d5729cb9b065fa37c86f192p@chr3:124485247..124485272, -
5.96e-34FFCP PHASE1:Hg19::chr13:50654430..50654438,+#_99acfb1f9d5729cb9b065fa37c86f192p@chr13:50654430..50654438, +
5.96e-34FFCP PHASE2:Hg19::chr2:30864461..30864472,+#_99acfb1f9d5729cb9b065fa37c86f192p11@LCLAT1
5.96e-34FFCP PHASE2:Hg19::chr13:30075330..30075333,+#_99acfb1f9d5729cb9b065fa37c86f192p@chr13:30075330..30075333, +
5.96e-34FFCP PHASE1:Hg19::chr2:30864461..30864472,+#_99acfb1f9d5729cb9b065fa37c86f192p11@LCLAT1
5.96e-34FFCP PHASE2:Hg19::chr12:69754026..69754035,+#_99acfb1f9d5729cb9b065fa37c86f192p@chr12:69754026..69754035, +
5.96e-34FFCP PHASE1:Hg19::chr5:53358788..53358795,-#_99acfb1f9d5729cb9b065fa37c86f192p@chr5:53358788..53358795, -
5.96e-34FFCP PHASE2:Hg19::chr4:151246994..151247003,-#_99acfb1f9d5729cb9b065fa37c86f192p@chr4:151246994..151247003, -
5.96e-34FFCP PHASE1:Hg19::chr8:23210765..23210805,+#_99acfb1f9d5729cb9b065fa37c86f192p@chr8:23210765..23210805, +
5.96e-34FFCP PHASE1:Hg19::chr4:151246994..151247003,-#_99acfb1f9d5729cb9b065fa37c86f192p@chr4:151246994..151247003, -
5.96e-34FFCP PHASE2:Hg19::chr13:45914842..45914847,-#_99acfb1f9d5729cb9b065fa37c86f192p14@TPT1
6.51e-34FFCP PHASE1:Hg19::chr15:90344831..90344839,-#_1281f18781e4a1ae887f0c8964636f01p@chr15:90344831..90344839, -
6.51e-34FFCP PHASE2:Hg19::chr15:90344831..90344839,-#_1281f18781e4a1ae887f0c8964636f01p@chr15:90344831..90344839, -
7.56e-34FFCP PHASE1:Hg19::chr3:147114993..147115013,-#_c17d92e55b08eb0d1c6bd3b43905ec83p5@ZIC4
7.56e-34FFCP PHASE2:Hg19::chr3:147114993..147115013,-#_c17d92e55b08eb0d1c6bd3b43905ec83p5@ZIC4
7.56e-34FFCP PHASE2:Hg19::chr7:1705417..1705429,+#_c17d92e55b08eb0d1c6bd3b43905ec83p@chr7:1705417..1705429, +
7.56e-34FFCP PHASE1:Hg19::chr7:1705417..1705429,+#_c17d92e55b08eb0d1c6bd3b43905ec83p@chr7:1705417..1705429, +
7.7e-34FFCP PHASE1:Hg19::chr3:147128031..147128038,+#_7e8d2622d2693895d0073f55f69d90f4p7@AB464362
7.7e-34FFCP PHASE2:Hg19::chr3:147128031..147128038,+#_7e8d2622d2693895d0073f55f69d90f4p7@AB464362
8.46e-34FFCP PHASE2:Hg19::chr3:134046037..134046050,+#_913f0455ad4ac18858ad8754be036291p@chr3:134046037..134046050, +
8.46e-34FFCP PHASE1:Hg19::chr3:134046037..134046050,+#_913f0455ad4ac18858ad8754be036291p@chr3:134046037..134046050, +
9.1e-34FFCP PHASE2:Hg19::chr17:17418548..17418557,-#_222408c431f7e6bba396127d2c5344bep@chr17:17418548..17418557, -
9.1e-34FFCP PHASE2:Hg19::chr15:33018927..33018930,+#_222408c431f7e6bba396127d2c5344bep@chr15:33018927..33018930, +
9.1e-34FFCP PHASE1:Hg19::chr17:17418548..17418557,-#_222408c431f7e6bba396127d2c5344bep@chr17:17418548..17418557, -
9.1e-34FFCP PHASE1:Hg19::chr15:33018927..33018930,+#_222408c431f7e6bba396127d2c5344bep@chr15:33018927..33018930, +
1.32e-33FFCP PHASE2:Hg19::chr7:140341251..140341265,-#_ee7f6b81010eea6b5600f07d37cb24d1p3@DENND2A
1.32e-33FFCP PHASE1:Hg19::chr7:140341251..140341265,-#_ee7f6b81010eea6b5600f07d37cb24d1p3@DENND2A
2.07e-33FFCP PHASE2:Hg19::chr4:107237244..107237257,+#_ef8deaf881c57a8d1bcd8735620eebe7p8@AIMP1
2.07e-33FFCP PHASE1:Hg19::chr4:107237244..107237257,+#_ef8deaf881c57a8d1bcd8735620eebe7p8@AIMP1
4.17e-30FFCP PHASE2:Hg19::chr19:15442274..15442284,+#_f16d87f1fda7efde884ffa435261a7b2p@chr19:15442274..15442284, +
4.17e-30FFCP PHASE1:Hg19::chr19:15442274..15442284,+#_f16d87f1fda7efde884ffa435261a7b2p@chr19:15442274..15442284, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001992&oldid=3277337"