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{{UBERON
{{UBERON
|id=UBERON:0004875
|alt_id=
|name=nephrogenic cord
|namespace=
|def="a portion of the urogenital ridge which is the source of much of the urinary system[WP]." [Wikipedia:Nephrogenic_cord]
|xref=FMA:72168;;ncithesaurus:Nephrogenic_Cord;;SCTID:361405003
|is_a=UBERON:0005423
|synonym="chorda nephrogenica" RELATED LATIN [Wikipedia:Nephrogenic_cord]
|comment=part_of or develops_from urogenital ridge?
|comment=part_of or develops_from urogenital ridge?
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="a portion of the urogenital ridge which is the source of much of the urinary system[WP]." [Wikipedia:Nephrogenic_cord]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0004876
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004875
|is_a=UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=nephrogenic cord
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="chorda nephrogenica" RELATED LATIN [Wikipedia:Nephrogenic_cord]
|union_of=
|xref=FMA:72168;;ncithesaurus:Nephrogenic_Cord;;SCTID:361405003
}}
}}

Latest revision as of 17:49, 12 September 2014

Name:nephrogenic cord
Namespace:FANTOM
Definition:"a portion of the urogenital ridge which is the source of much of the urinary system[WP]." [Wikipedia:Nephrogenic_cord]
Xrefs:
links:

FMA:72168
ncithesaurus:Nephrogenic_Cord

SCTID:361405003
Synonyms: "chorda nephrogenica" RELATED LATIN [Wikipedia:Nephrogenic_cord]
Comments:part_of or develops_from urogenital ridge?

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0004876(urogenital ridge)
part_of:UBERON:0000922(embryo)



Children

part of:UBERON:0005754 (rostral part of nephrogenic cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004875 (nephrogenic cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.83e-65FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_3e74b05bcd4ae70139df9224d331bf42p4@Defb42
2.83e-65FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_3e74b05bcd4ae70139df9224d331bf42p4@Defb42
2.83e-65FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_3e74b05bcd4ae70139df9224d331bf42p@chr14:63585028..63585037, -
2.83e-65FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_3e74b05bcd4ae70139df9224d331bf42p@chr10:127470655..127470664, +
2.83e-65FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_3e74b05bcd4ae70139df9224d331bf42p4@Spink12
2.83e-65FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_3e74b05bcd4ae70139df9224d331bf42p@chr10:127470655..127470664, +
2.83e-65FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_3e74b05bcd4ae70139df9224d331bf42p@chr14:63585028..63585037, -
2.83e-65FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_3e74b05bcd4ae70139df9224d331bf42p4@Spink12
3.99e-50FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_c356b2c847a515521a6fe753444b3a76p@chr2:152388713..152388729, +
3.99e-50FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_c356b2c847a515521a6fe753444b3a76p@chr2:152388713..152388729, +
5.6e-50FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_a52ba957e8ad4186f4d8110f79d26ad7p@chr2:120409486..120409492, +
5.6e-50FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_a52ba957e8ad4186f4d8110f79d26ad7p@chr2:120409486..120409492, +
1.6e-49FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_386211f7cdcce24144f83dd84ef487d5p@chr14:63585020..63585025, -
1.6e-49FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_386211f7cdcce24144f83dd84ef487d5p4@Cyb561
1.6e-49FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_386211f7cdcce24144f83dd84ef487d5p@chr14:63585048..63585062, -
1.6e-49FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_386211f7cdcce24144f83dd84ef487d5p2@D730048I06Rik, p2@Gm17727
1.6e-49FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_386211f7cdcce24144f83dd84ef487d5p@chr11:76361451..76361499, +
1.6e-49FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_386211f7cdcce24144f83dd84ef487d5p@chr14:63585048..63585062, -
1.6e-49FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_386211f7cdcce24144f83dd84ef487d5p@chr11:76361451..76361499, +
1.6e-49FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_386211f7cdcce24144f83dd84ef487d5p2@D730048I06Rik, p2@Gm17727
1.6e-49FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_386211f7cdcce24144f83dd84ef487d5p@chr14:63585020..63585025, -
1.6e-49FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_386211f7cdcce24144f83dd84ef487d5p4@Cyb561
2.33e-49FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_d9799cdb5d1792b54fa1fa8cc7d7483ap@chr9:26611246..26611253, -
2.33e-49FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_d9799cdb5d1792b54fa1fa8cc7d7483ap@chr14:63627556..63627564, -
2.33e-49FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_d9799cdb5d1792b54fa1fa8cc7d7483ap@chr14:63627556..63627564, -
2.33e-49FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_d9799cdb5d1792b54fa1fa8cc7d7483ap@chr9:26732045..26732085, +
2.33e-49FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_d9799cdb5d1792b54fa1fa8cc7d7483ap@chr9:26611246..26611253, -
2.33e-49FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_d9799cdb5d1792b54fa1fa8cc7d7483ap@chr9:26732045..26732085, +
2.33e-49FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_d9799cdb5d1792b54fa1fa8cc7d7483ap2@Eddm3b
2.33e-49FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_d9799cdb5d1792b54fa1fa8cc7d7483ap2@Eddm3b
3.4e-49FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_7e60dff3c96e89262e358066b0d5d3cap@chr2:69981027..69981032, +
3.4e-49FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_7e60dff3c96e89262e358066b0d5d3cap@chr2:69981027..69981032, +
9.75e-45FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_121e7bbcf9d5f9174346c0dd1cd0f66ep@chr1:172416185..172416189, -
9.75e-45FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_121e7bbcf9d5f9174346c0dd1cd0f66ep10@PAX2
9.75e-45FFCP PHASE1:Hg19::chr1:172416185..172416189,-#_121e7bbcf9d5f9174346c0dd1cd0f66ep@chr1:172416185..172416189, -
9.75e-45FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_121e7bbcf9d5f9174346c0dd1cd0f66ep10@PAX2
9.75e-45FFCP PHASE2:Hg19::chr14:68644730..68644737,+#_121e7bbcf9d5f9174346c0dd1cd0f66ep@chr14:68644730..68644737, +
9.75e-45FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_121e7bbcf9d5f9174346c0dd1cd0f66ep@chr14:68644730..68644737, +
4.54e-44FFCP PHASE1:Mm9::chr11:53938008..53938022,+#_2c808356ccd804cd36d69a04f78b05bep11@P4ha2
4.54e-44FFCP PHASE2:Mm9::chr11:17224952..17224968,+#_2c808356ccd804cd36d69a04f78b05bep@chr11:17224952..17224968, +
4.54e-44FFCP PHASE2:Mm9::chr4:138824620..138824627,+#_2c808356ccd804cd36d69a04f78b05bep@chr4:138824620..138824627, +
4.54e-44FFCP PHASE1:Mm9::chrX:160347529..160347538,+#_2c808356ccd804cd36d69a04f78b05bep@chrX:160347529..160347538, +
4.54e-44FFCP PHASE1:Mm9::chr8:25706083..25706089,-#_2c808356ccd804cd36d69a04f78b05bep4@Ido1
4.54e-44FFCP PHASE2:Mm9::chr12:110131571..110131579,-#_2c808356ccd804cd36d69a04f78b05bep15@Wars
4.54e-44FFCP PHASE1:Mm9::chr1:90155722..90155743,+#_2c808356ccd804cd36d69a04f78b05bep@chr1:90155722..90155743, +
4.54e-44FFCP PHASE1:Mm9::chr11:63779573..63779582,+#_2c808356ccd804cd36d69a04f78b05bep@chr11:63779573..63779582, +
4.54e-44FFCP PHASE1:Mm9::chr10:91753336..91753348,-#_2c808356ccd804cd36d69a04f78b05bep@chr10:91753336..91753348, -
4.54e-44FFCP PHASE2:Mm9::chr8:25706249..25706254,+#_2c808356ccd804cd36d69a04f78b05bep@chr8:25706249..25706254, +
4.54e-44FFCP PHASE2:Mm9::chr13:21379430..21379437,-#_2c808356ccd804cd36d69a04f78b05bep@chr13:21379430..21379437, -
4.54e-44FFCP PHASE1:Mm9::chr9:65941913..65941923,-#_2c808356ccd804cd36d69a04f78b05bep@chr9:65941913..65941923, -
4.54e-44FFCP PHASE2:Mm9::chr15:54678902..54678911,-#_2c808356ccd804cd36d69a04f78b05bep@chr15:54678902..54678911, -
4.54e-44FFCP PHASE1:Mm9::chr9:26688157..26688159,-#_2c808356ccd804cd36d69a04f78b05bep@chr9:26688157..26688159, -
4.54e-44FFCP PHASE1:Mm9::chr4:106731469..106731481,-#_2c808356ccd804cd36d69a04f78b05bep@chr4:106731469..106731481, -
4.54e-44FFCP PHASE2:Mm9::chr2:164479326..164479336,+#_2c808356ccd804cd36d69a04f78b05bep@chr2:164479326..164479336, +
4.54e-44FFCP PHASE1:Mm9::chr2:160573108..160573123,+#_2c808356ccd804cd36d69a04f78b05bep@chr2:160573108..160573123, +
4.54e-44FFCP PHASE2:Mm9::chrX:156776465..156776473,-#_2c808356ccd804cd36d69a04f78b05bep@chrX:156776465..156776473, -
4.54e-44FFCP PHASE1:Mm9::chrX:75798114..75798125,-#_2c808356ccd804cd36d69a04f78b05bep@chrX:75798114..75798125, -
4.54e-44FFCP PHASE1:Mm9::chr1:18213651..18213663,-#_2c808356ccd804cd36d69a04f78b05bep1@Defb44-ps
4.54e-44FFCP PHASE1:Mm9::chr11:96150839..96150842,-#_2c808356ccd804cd36d69a04f78b05bep@chr11:96150839..96150842, -
4.54e-44FFCP PHASE2:Mm9::chr5:110773718..110773729,+#_2c808356ccd804cd36d69a04f78b05bep@chr5:110773718..110773729, +
4.54e-44FFCP PHASE2:Mm9::chr15:75329148..75329155,+#_2c808356ccd804cd36d69a04f78b05bep@chr15:75329148..75329155, +
4.54e-44FFCP PHASE2:Mm9::chr9:26688157..26688159,-#_2c808356ccd804cd36d69a04f78b05bep@chr9:26688157..26688159, -
4.54e-44FFCP PHASE1:Mm9::chr7:25565920..25565950,-#_2c808356ccd804cd36d69a04f78b05bep@chr7:25565920..25565950, -
4.54e-44FFCP PHASE2:Mm9::chr5:35930667..35930691,+#_2c808356ccd804cd36d69a04f78b05bep@chr5:35930667..35930691, +
4.54e-44FFCP PHASE1:Mm9::chr13:21379065..21379072,-#_2c808356ccd804cd36d69a04f78b05bep@chr13:21379065..21379072, -
4.54e-44FFCP PHASE2:Mm9::chr1:90155722..90155743,+#_2c808356ccd804cd36d69a04f78b05bep@chr1:90155722..90155743, +
4.54e-44FFCP PHASE2:Mm9::chr13:21378927..21378932,-#_2c808356ccd804cd36d69a04f78b05bep@chr13:21378927..21378932, -
4.54e-44FFCP PHASE2:Mm9::chr12:16663110..16663116,+#_2c808356ccd804cd36d69a04f78b05bep3@Ntsr2
4.54e-44FFCP PHASE1:Mm9::chr7:31507623..31507631,+#_2c808356ccd804cd36d69a04f78b05bep4@Atp4a
4.54e-44FFCP PHASE1:Mm9::chr1:87936238..87936249,+#_2c808356ccd804cd36d69a04f78b05bep@chr1:87936238..87936249, +
4.54e-44FFCP PHASE1:Mm9::chr14:63611214..63611229,+#_2c808356ccd804cd36d69a04f78b05bep@chr14:63611214..63611229, +
4.54e-44FFCP PHASE2:Mm9::chr16:22547027..22547063,+#_2c808356ccd804cd36d69a04f78b05bep@chr16:22547027..22547063, +
4.54e-44FFCP PHASE2:Mm9::chr13:21379306..21379315,-#_2c808356ccd804cd36d69a04f78b05bep@chr13:21379306..21379315, -
4.54e-44FFCP PHASE1:Mm9::chr7:109379339..109379349,+#_2c808356ccd804cd36d69a04f78b05bep15@Pgap2
4.54e-44FFCP PHASE2:Mm9::chrX:75798157..75798162,-#_2c808356ccd804cd36d69a04f78b05bep@chrX:75798157..75798162, -
4.54e-44FFCP PHASE2:Mm9::chrX:130496372..130496393,-#_2c808356ccd804cd36d69a04f78b05bep@chrX:130496372..130496393, -
4.54e-44FFCP PHASE2:Mm9::chr16:23308182..23308185,+#_2c808356ccd804cd36d69a04f78b05bep@chr16:23308182..23308185, +
4.54e-44FFCP PHASE2:Mm9::chr5:77645280..77645295,-#_2c808356ccd804cd36d69a04f78b05bep@chr5:77645280..77645295, -
4.54e-44FFCP PHASE2:Mm9::chr8:96014490..96014496,+#_2c808356ccd804cd36d69a04f78b05bep@chr8:96014490..96014496, +
4.54e-44FFCP PHASE2:Mm9::chr1:89597818..89597827,+#_2c808356ccd804cd36d69a04f78b05bep@chr1:89597818..89597827, +
4.54e-44FFCP PHASE1:Mm9::chr9:35651788..35651804,-#_2c808356ccd804cd36d69a04f78b05bep1@9230110F15Rik
4.54e-44FFCP PHASE1:Mm9::chr2:148676859..148676866,-#_2c808356ccd804cd36d69a04f78b05bep5@9230104L09Rik
4.54e-44FFCP PHASE1:Mm9::chr11:34107562..34107572,-#_2c808356ccd804cd36d69a04f78b05bep@chr11:34107562..34107572, -
4.54e-44FFCP PHASE2:Mm9::chr11:116901629..116901639,-#_2c808356ccd804cd36d69a04f78b05bep3@uc007mmw.1
4.54e-44FFCP PHASE2:Mm9::chr8:23045782..23045791,+#_2c808356ccd804cd36d69a04f78b05bep@chr8:23045782..23045791, +
4.54e-44FFCP PHASE2:Mm9::chr11:34107586..34107593,-#_2c808356ccd804cd36d69a04f78b05bep@chr11:34107586..34107593, -
4.54e-44FFCP PHASE2:Mm9::chr13:21379159..21379162,-#_2c808356ccd804cd36d69a04f78b05bep@chr13:21379159..21379162, -
4.54e-44FFCP PHASE1:Mm9::chr7:105313229..105313234,-#_2c808356ccd804cd36d69a04f78b05bep17@Capn5
4.54e-44FFCP PHASE2:Mm9::chr5:31379845..31379855,+#_2c808356ccd804cd36d69a04f78b05bep@chr5:31379845..31379855, +
4.54e-44FFCP PHASE1:Mm9::chr13:24270118..24270122,-#_2c808356ccd804cd36d69a04f78b05bep@chr13:24270118..24270122, -
4.54e-44FFCP PHASE1:Mm9::chr10:116399500..116399516,+#_2c808356ccd804cd36d69a04f78b05bep@chr10:116399500..116399516, +
4.54e-44FFCP PHASE2:Mm9::chr9:42151966..42151976,-#_2c808356ccd804cd36d69a04f78b05bep9@Tecta
4.54e-44FFCP PHASE1:Mm9::chrX:50280199..50280211,+#_2c808356ccd804cd36d69a04f78b05bep@chrX:50280199..50280211, +
4.54e-44FFCP PHASE1:Mm9::chr8:91107095..91107103,+#_2c808356ccd804cd36d69a04f78b05bep@chr8:91107095..91107103, +
4.54e-44FFCP PHASE1:Mm9::chr5:88272459..88272484,-#_2c808356ccd804cd36d69a04f78b05bep@chr5:88272459..88272484, -
4.54e-44FFCP PHASE1:Mm9::chr2:164480465..164480471,-#_2c808356ccd804cd36d69a04f78b05bep2@Wfdc9
4.54e-44FFCP PHASE2:Mm9::chr2:148676859..148676866,-#_2c808356ccd804cd36d69a04f78b05bep5@9230104L09Rik
4.54e-44FFCP PHASE1:Mm9::chr14:66589365..66589371,+#_2c808356ccd804cd36d69a04f78b05bep19@Clu
4.54e-44FFCP PHASE1:Mm9::chr11:101958887..101958896,-#_2c808356ccd804cd36d69a04f78b05bep@chr11:101958887..101958896, -
4.54e-44FFCP PHASE1:Mm9::chr9:34813361..34813403,-#_2c808356ccd804cd36d69a04f78b05bep@chr9:34813361..34813403, -

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