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{{CL
{{CL
|id=CL:0000864
|alt_id=
|name=tissue-resident macrophage
|namespace=cell;;efo
|def="A macrophage constitutively resident in a particular tissue under non-inflammatory conditions, and capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells." [GO_REF:0000031, GOC:ana, PMID:19770654]
|xref=FMA:84642;;FMA:84644
|is_a=CL:0000235
|synonym="fixed macrophage" EXACT [];;"resting histiocyte" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A macrophage constitutively resident in a particular tissue under non-inflammatory conditions, and capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells." [GO_REF:0000031, GOC:ana, PMID:19770654]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000864
|is_a=CL:0000235
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=tissue-resident macrophage
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000479
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="fixed macrophage" EXACT [];;"resting histiocyte" EXACT []
|union_of=
|xref=FMA:84642;;FMA:84644
}}
}}

Latest revision as of 16:38, 12 September 2014

Name:tissue-resident macrophage
Namespace:FANTOM
Definition:"A macrophage constitutively resident in a particular tissue under non-inflammatory conditions, and capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells." [GO_REF:0000031, GOC:ana, PMID:19770654]
Xrefs:
links:

FMA:84642

FMA:84644
Synonyms: "fixed macrophage" EXACT []
"resting histiocyte" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000235(macrophage)
part_of:UBERON:0000479(tissue)



Children


is a:CL:0000878 (central nervous system macrophage),CL:0002476 (bone marrow macrophage)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000864 (tissue-resident macrophage), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.54e-44FFCP PHASE1:Mm9::chr12:112646729..112646768,+#_516c32b446bc26efc4de3890a61761cep@chr12:112646729..112646768, +
4.54e-44FFCP PHASE1:Mm9::chrX:9046562..9046572,-#_516c32b446bc26efc4de3890a61761cep4@Cybb
4.54e-44FFCP PHASE2:Mm9::chr7:135282667..135282669,+#_516c32b446bc26efc4de3890a61761cep@chr7:135282667..135282669, +
4.54e-44FFCP PHASE1:Mm9::chr4:136685291..136685295,+#_516c32b446bc26efc4de3890a61761cep@chr4:136685291..136685295, +
4.54e-44FFCP PHASE1:Mm9::chr13:13485859..13485864,-#_516c32b446bc26efc4de3890a61761cep4@Gpr137b
4.54e-44FFCP PHASE2:Mm9::chr8:113227136..113227143,+#_516c32b446bc26efc4de3890a61761cep@chr8:113227136..113227143, +
4.54e-44FFCP PHASE2:Mm9::chr13:103497023..103497030,+#_516c32b446bc26efc4de3890a61761cep@chr13:103497023..103497030, +
4.54e-44FFCP PHASE1:Mm9::chr11:4733080..4733087,-#_516c32b446bc26efc4de3890a61761cep13@Nf2
4.54e-44FFCP PHASE2:Mm9::chr11:4733080..4733087,-#_516c32b446bc26efc4de3890a61761cep13@Nf2
4.54e-44FFCP PHASE2:Mm9::chr6:48989609..48989612,+#_516c32b446bc26efc4de3890a61761cep@chr6:48989609..48989612, +
4.54e-44FFCP PHASE2:Mm9::chrX:9046562..9046572,-#_516c32b446bc26efc4de3890a61761cep4@Cybb
4.54e-44FFCP PHASE1:Mm9::chr13:103497023..103497030,+#_516c32b446bc26efc4de3890a61761cep@chr13:103497023..103497030, +
4.54e-44FFCP PHASE1:Mm9::chr6:48989609..48989612,+#_516c32b446bc26efc4de3890a61761cep@chr6:48989609..48989612, +
4.54e-44FFCP PHASE1:Mm9::chr7:31145621..31145622,+#_516c32b446bc26efc4de3890a61761cep@chr7:31145621..31145622, +
4.54e-44FFCP PHASE2:Mm9::chr12:112646729..112646768,+#_516c32b446bc26efc4de3890a61761cep@chr12:112646729..112646768, +
4.54e-44FFCP PHASE1:Mm9::chr8:113227136..113227143,+#_516c32b446bc26efc4de3890a61761cep@chr8:113227136..113227143, +
4.54e-44FFCP PHASE2:Mm9::chr13:13485859..13485864,-#_516c32b446bc26efc4de3890a61761cep4@Gpr137b
4.54e-44FFCP PHASE1:Mm9::chr7:135282667..135282669,+#_516c32b446bc26efc4de3890a61761cep@chr7:135282667..135282669, +
4.54e-44FFCP PHASE2:Mm9::chr4:136685291..136685295,+#_516c32b446bc26efc4de3890a61761cep@chr4:136685291..136685295, +
4.54e-44FFCP PHASE2:Mm9::chr7:31145621..31145622,+#_516c32b446bc26efc4de3890a61761cep@chr7:31145621..31145622, +
6.75e-44FFCP PHASE1:Mm9::chr1:173164773..173164781,-#_e8b5b151a9dc19c8317f3c7903943577p3@Fcer1g
6.75e-44FFCP PHASE2:Mm9::chr1:173164773..173164781,-#_e8b5b151a9dc19c8317f3c7903943577p3@Fcer1g
1.12e-43FFCP PHASE2:Mm9::chr11:69478859..69478867,-#_0b084ba5b457cac5eedceaaaa57fafa5p@chr11:69478859..69478867, -
1.12e-43FFCP PHASE1:Mm9::chr11:69478859..69478867,-#_0b084ba5b457cac5eedceaaaa57fafa5p@chr11:69478859..69478867, -
1.85e-43FFCP PHASE2:Mm9::chr6:48997958..48997979,-#_5cefccc1a45f489754e6fa429f110341p@chr6:48997958..48997979, -
1.85e-43FFCP PHASE1:Mm9::chr6:48997958..48997979,-#_5cefccc1a45f489754e6fa429f110341p@chr6:48997958..48997979, -
1.93e-39FFCP PHASE2:Mm9::chr11:69479338..69479345,-#_50348d5027c3535b97d29c7a62d0b892p@chr11:69479338..69479345, -
1.93e-39FFCP PHASE1:Mm9::chr11:69479338..69479345,-#_50348d5027c3535b97d29c7a62d0b892p@chr11:69479338..69479345, -
5.95e-39FFCP PHASE1:Mm9::chr6:48997901..48997913,+#_e90322bcbf02696eb58df851b225795fp@chr6:48997901..48997913, +
5.95e-39FFCP PHASE2:Mm9::chr11:69479077..69479088,-#_e90322bcbf02696eb58df851b225795fp@chr11:69479077..69479088, -
5.95e-39FFCP PHASE2:Mm9::chr6:48997901..48997913,+#_e90322bcbf02696eb58df851b225795fp@chr6:48997901..48997913, +
5.95e-39FFCP PHASE1:Mm9::chr11:69479077..69479088,-#_e90322bcbf02696eb58df851b225795fp@chr11:69479077..69479088, -
1.6e-35FFCP PHASE2:Mm9::chr14:31973915..31973932,+#_8e9bbd81ca2ac5e301dc7339626b715ap@chr14:31973915..31973932, +
1.6e-35FFCP PHASE1:Mm9::chr14:31973915..31973932,+#_8e9bbd81ca2ac5e301dc7339626b715ap@chr14:31973915..31973932, +
1.97e-35FFCP PHASE2:Mm9::chr6:48997305..48997322,+#_ef1c66aab8f3db59a8528f0d17a5e6cfp@chr6:48997305..48997322, +
1.97e-35FFCP PHASE1:Mm9::chr6:48997305..48997322,+#_ef1c66aab8f3db59a8528f0d17a5e6cfp@chr6:48997305..48997322, +
2.41e-35FFCP PHASE2:Mm9::chr5:138670967..138670977,+#_502ba895206a5345d5e380ca9a83c793p3@BC055004, p3@LOC100504821
2.41e-35FFCP PHASE1:Mm9::chr5:138670967..138670977,+#_502ba895206a5345d5e380ca9a83c793p3@BC055004, p3@LOC100504821
2.95e-35FFCP PHASE2:Mm9::chr6:48993990..48994006,+#_33669c1dbe56ef52d77522fede5e0fc5p@chr6:48993990..48994006, +
2.95e-35FFCP PHASE1:Mm9::chr6:48993990..48994006,+#_33669c1dbe56ef52d77522fede5e0fc5p@chr6:48993990..48994006, +
1.23e-33FFCP PHASE2:Mm9::chr6:122805870..122805874,-#_cdc842e9e3f257387f5765fa7f1a5a3ap@chr6:122805870..122805874, -
1.23e-33FFCP PHASE1:Mm9::chr6:122805870..122805874,-#_cdc842e9e3f257387f5765fa7f1a5a3ap@chr6:122805870..122805874, -
2.04e-33FFCP PHASE1:Mm9::chr10:116715054..116715061,-#_1299bb4e3e98e76824dd6f4fe069aa21p@chr10:116715054..116715061, -
2.04e-33FFCP PHASE2:Mm9::chr10:116715054..116715061,-#_1299bb4e3e98e76824dd6f4fe069aa21p@chr10:116715054..116715061, -
2.62e-33FFCP PHASE1:Mm9::chr11:69479320..69479327,-#_87bf0cbd8afd127b2cae4f88afced72ep@chr11:69479320..69479327, -
2.62e-33FFCP PHASE1:Mm9::chr8:74103228..74103246,+#_87bf0cbd8afd127b2cae4f88afced72ep16@Slc27a1
2.62e-33FFCP PHASE2:Mm9::chr8:74103228..74103246,+#_87bf0cbd8afd127b2cae4f88afced72ep16@Slc27a1
2.62e-33FFCP PHASE2:Mm9::chr11:69479320..69479327,-#_87bf0cbd8afd127b2cae4f88afced72ep@chr11:69479320..69479327, -
7.1e-33FFCP PHASE2:Mm9::chr11:102297834..102297848,+#_c66dd78f250a7727c0326afaa9bcf9f5p@chr11:102297834..102297848, +
7.1e-33FFCP PHASE1:Mm9::chr11:102297834..102297848,+#_c66dd78f250a7727c0326afaa9bcf9f5p@chr11:102297834..102297848, +
9.22e-33FFCP PHASE1:Mm9::chr6:48995364..48995370,+#_30dc16176864b81253c5a4b1209bd0bbp@chr6:48995364..48995370, +
9.22e-33FFCP PHASE2:Mm9::chr4:136452258..136452269,-#_30dc16176864b81253c5a4b1209bd0bbp@chr4:136452258..136452269, -
9.22e-33FFCP PHASE2:Mm9::chr6:48997291..48997298,+#_30dc16176864b81253c5a4b1209bd0bbp@chr6:48997291..48997298, +
9.22e-33FFCP PHASE1:Mm9::chr6:48997291..48997298,+#_30dc16176864b81253c5a4b1209bd0bbp@chr6:48997291..48997298, +
9.22e-33FFCP PHASE1:Mm9::chr4:136452258..136452269,-#_30dc16176864b81253c5a4b1209bd0bbp@chr4:136452258..136452269, -
9.22e-33FFCP PHASE2:Mm9::chr6:48995364..48995370,+#_30dc16176864b81253c5a4b1209bd0bbp@chr6:48995364..48995370, +
2.16e-32FFCP PHASE2:Mm9::chr4:136446198..136446209,-#_d42cd31ca7fe044e7aa884662a713a24p@chr4:136446198..136446209, -
2.16e-32FFCP PHASE1:Mm9::chr4:136446198..136446209,-#_d42cd31ca7fe044e7aa884662a713a24p@chr4:136446198..136446209, -
2.6e-32FFCP PHASE2:Mm9::chr6:48995408..48995424,+#_d57268a49ea20a077356ed0d77f37a3fp@chr6:48995408..48995424, +
2.6e-32FFCP PHASE1:Mm9::chr6:48995408..48995424,+#_d57268a49ea20a077356ed0d77f37a3fp@chr6:48995408..48995424, +
2.6e-32FFCP PHASE2:Mm9::chr6:48997398..48997412,+#_d57268a49ea20a077356ed0d77f37a3fp@chr6:48997398..48997412, +
2.6e-32FFCP PHASE1:Mm9::chr6:48997398..48997412,+#_d57268a49ea20a077356ed0d77f37a3fp@chr6:48997398..48997412, +
3.13e-32FFCP PHASE2:Mm9::chr14:31973221..31973260,-#_3a22919d926d0496f4b4c05d4f9dcc27p@chr14:31973221..31973260, -
3.13e-32FFCP PHASE1:Mm9::chr14:31973221..31973260,-#_3a22919d926d0496f4b4c05d4f9dcc27p@chr14:31973221..31973260, -
5.28e-30FFCP PHASE2:Mm9::chr10:116714486..116714508,-#_3800462b08dfd9682fdf1e65ef9facb2p@chr10:116714486..116714508, -
5.28e-30FFCP PHASE1:Mm9::chr10:116714486..116714508,-#_3800462b08dfd9682fdf1e65ef9facb2p@chr10:116714486..116714508, -
5.63e-30FFCP PHASE1:Mm9::chr7:128207732..128207737,-#_4df89c165265332f918c1b0b4d66ae47p@chr7:128207732..128207737, -
5.63e-30FFCP PHASE1:Mm9::chr17:25273605..25273609,+#_4df89c165265332f918c1b0b4d66ae47p6@Clcn7
5.63e-30FFCP PHASE2:Mm9::chr13:76099911..76099914,+#_4df89c165265332f918c1b0b4d66ae47p@chr13:76099911..76099914, +
5.63e-30FFCP PHASE1:Mm9::chr19:12539392..12539396,+#_4df89c165265332f918c1b0b4d66ae47p@chr19:12539392..12539396, +
5.63e-30FFCP PHASE2:Mm9::chr1:173159807..173159816,-#_4df89c165265332f918c1b0b4d66ae47p@chr1:173159807..173159816, -
5.63e-30FFCP PHASE2:Mm9::chr17:25273605..25273609,+#_4df89c165265332f918c1b0b4d66ae47p6@Clcn7
5.63e-30FFCP PHASE2:Mm9::chr19:12539392..12539396,+#_4df89c165265332f918c1b0b4d66ae47p@chr19:12539392..12539396, +
5.63e-30FFCP PHASE1:Mm9::chrX:9046606..9046630,-#_4df89c165265332f918c1b0b4d66ae47p3@Cybb
5.63e-30FFCP PHASE2:Mm9::chr3:151394747..151394780,-#_4df89c165265332f918c1b0b4d66ae47p@chr3:151394747..151394780, -
5.63e-30FFCP PHASE2:Mm9::chr3:95358394..95358404,+#_4df89c165265332f918c1b0b4d66ae47p@chr3:95358394..95358404, +
5.63e-30FFCP PHASE1:Mm9::chr3:95358394..95358404,+#_4df89c165265332f918c1b0b4d66ae47p@chr3:95358394..95358404, +
5.63e-30FFCP PHASE2:Mm9::chr6:122528009..122528020,-#_4df89c165265332f918c1b0b4d66ae47p@chr6:122528009..122528020, -
5.63e-30FFCP PHASE1:Mm9::chr13:76099911..76099914,+#_4df89c165265332f918c1b0b4d66ae47p@chr13:76099911..76099914, +
5.63e-30FFCP PHASE2:Mm9::chr7:128207732..128207737,-#_4df89c165265332f918c1b0b4d66ae47p@chr7:128207732..128207737, -
5.63e-30FFCP PHASE1:Mm9::chr3:151394747..151394780,-#_4df89c165265332f918c1b0b4d66ae47p@chr3:151394747..151394780, -
5.63e-30FFCP PHASE2:Mm9::chrX:9046606..9046630,-#_4df89c165265332f918c1b0b4d66ae47p3@Cybb
5.63e-30FFCP PHASE1:Mm9::chr10:75403311..75403323,-#_4df89c165265332f918c1b0b4d66ae47p3@ENSMUST00000059658, p3@uc007fts.1
5.63e-30FFCP PHASE2:Mm9::chr10:75403311..75403323,-#_4df89c165265332f918c1b0b4d66ae47p3@ENSMUST00000059658, p3@uc007fts.1
5.63e-30FFCP PHASE1:Mm9::chr6:122528009..122528020,-#_4df89c165265332f918c1b0b4d66ae47p@chr6:122528009..122528020, -
5.63e-30FFCP PHASE1:Mm9::chr1:173159807..173159816,-#_4df89c165265332f918c1b0b4d66ae47p@chr1:173159807..173159816, -
7.42e-30FFCP PHASE2:Mm9::chr6:48997360..48997394,+#_0ed0255a2c7b2f725876be351a059fabp@chr6:48997360..48997394, +
7.42e-30FFCP PHASE1:Mm9::chr6:48997360..48997394,+#_0ed0255a2c7b2f725876be351a059fabp@chr6:48997360..48997394, +
1.1e-29FFCP PHASE1:Mm9::chr16:32400811..32400820,+#_b968842627caedafaed943da79c87bf1p4@Tm4sf19
1.1e-29FFCP PHASE2:Mm9::chr10:127033266..127033304,+#_b968842627caedafaed943da79c87bf1p1@ENSMUST00000124182
1.1e-29FFCP PHASE1:Mm9::chr10:127033266..127033304,+#_b968842627caedafaed943da79c87bf1p1@ENSMUST00000124182
1.1e-29FFCP PHASE2:Mm9::chr16:32400811..32400820,+#_b968842627caedafaed943da79c87bf1p4@Tm4sf19
6.0e-29FFCP PHASE1:Mm9::chr11:4733117..4733126,-#_c3fcfbc87fef057276f5c2728689a257p11@Nf2
6.0e-29FFCP PHASE2:Mm9::chr11:4733117..4733126,-#_c3fcfbc87fef057276f5c2728689a257p11@Nf2
2.2e-28FFCP PHASE2:Mm9::chr6:48992765..48992800,+#_9076c1ab092faae518db55be57a04dcep@chr6:48992765..48992800, +
2.2e-28FFCP PHASE1:Mm9::chr6:48992765..48992800,+#_9076c1ab092faae518db55be57a04dcep@chr6:48992765..48992800, +
2.2e-28FFCP PHASE2:Mm9::chr6:48992877..48992890,-#_9076c1ab092faae518db55be57a04dcep@chr6:48992877..48992890, -
2.2e-28FFCP PHASE1:Mm9::chr6:48992877..48992890,-#_9076c1ab092faae518db55be57a04dcep@chr6:48992877..48992890, -
8.9e-28FFCP PHASE1:Mm9::chr10:116714720..116714745,-#_9f00dde13d5322cef6db20786a87a955p@chr10:116714720..116714745, -
8.9e-28FFCP PHASE2:Mm9::chr10:116714720..116714745,-#_9f00dde13d5322cef6db20786a87a955p@chr10:116714720..116714745, -

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