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{{CL
{{CL
|id=CL:0002222
|alt_id=
|name=vertebrate lens cell
|namespace=cell
|def="A cell comprising the transparent, biconvex body separating the posterior chamber and vitreous body, and constituting part of the refracting mechanism of the mammalian eye." [GOC:tfm, ISBN:0721662544]
|xref=FMA:70950
|is_a=CL:0000066;;CL:0000306;;CL:0002371
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-09-07T10:38:03Z
|def="A cell comprising the transparent, biconvex body separating the posterior chamber and vitreous body, and constituting part of the refracting mechanism of the mammalian eye." [GOC:tfm, ISBN:0721662544]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002222
|is_a=CL:0000066 ;;CL:0000306 ;;CL:0002371
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=vertebrate lens cell
|namespace=FANTOM
|obo_creation_date=2010-09-07T10:38:03Z
|part_of=UBERON:0000965
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=FMA:70950
}}
}}

Latest revision as of 16:41, 12 September 2014

Name:vertebrate lens cell
Namespace:FANTOM
Definition:"A cell comprising the transparent, biconvex body separating the posterior chamber and vitreous body, and constituting part of the refracting mechanism of the mammalian eye." [GOC:tfm, ISBN:0721662544]
Xrefs:
links:
FMA:70950
Created by:tmeehan
Creation date:2010-09-07T10:38:03Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000066(epithelial cell),CL:0000306(crystallin accumulating cell),CL:0002371(somatic cell)
part_of:UBERON:0000965(lens of camera-type eye)



Children


is a:CL:0002224 (lens epithelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002222 (vertebrate lens cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.41e-88FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_62525fd9efbc11171f3ce554eaac3b37p1@CRYBB3
1.41e-88FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_62525fd9efbc11171f3ce554eaac3b37p1@CRYBB3
3.32e-74FFCP PHASE2:Hg19::chr22:25615600..25615611,+#_853714fb28d1c53b7501497cd8e1ad1ep1@CRYBB2
3.32e-74FFCP PHASE1:Hg19::chr22:25615600..25615611,+#_853714fb28d1c53b7501497cd8e1ad1ep1@CRYBB2
5.48e-74FFCP PHASE2:Hg19::chr19:51891222..51891233,-#_c29434cfd2fb817d51655baf61a2df0ap1@LIM2
5.48e-74FFCP PHASE1:Hg19::chr19:51891222..51891233,-#_c29434cfd2fb817d51655baf61a2df0ap1@LIM2
3.8e-56FFCP PHASE2:Hg19::chr22:27017921..27017928,+#_98df0c1d7164d031b01ab5e851941bdcp1@CRYBA4
3.8e-56FFCP PHASE1:Hg19::chr22:27017921..27017928,+#_98df0c1d7164d031b01ab5e851941bdcp1@CRYBA4
3.1e-50FFCP PHASE2:Hg19::chr13:104778247..104778293,+#_1b3f1a09c2ace582bf7bc9f441c21a68p@chr13:104778247..104778293, +
3.1e-50FFCP PHASE1:Hg19::chr13:104778247..104778293,+#_1b3f1a09c2ace582bf7bc9f441c21a68p@chr13:104778247..104778293, +
3.1e-50FFCP PHASE2:Hg19::chr20:61204240..61204241,+#_1b3f1a09c2ace582bf7bc9f441c21a68p@chr20:61204240..61204241, +
3.1e-50FFCP PHASE1:Hg19::chr20:61204240..61204241,+#_1b3f1a09c2ace582bf7bc9f441c21a68p@chr20:61204240..61204241, +
5.14e-50FFCP PHASE1:Hg19::chr21:44592820..44592840,-#_a4397da7f5d422e790ff492d6c59bdcep2@CU686889
5.14e-50FFCP PHASE2:Hg19::chr14:37642016..37642022,-#_a4397da7f5d422e790ff492d6c59bdcep7@SLC25A21
5.14e-50FFCP PHASE1:Hg19::chr14:37642016..37642022,-#_a4397da7f5d422e790ff492d6c59bdcep7@SLC25A21
5.14e-50FFCP PHASE2:Hg19::chr21:44592820..44592840,-#_a4397da7f5d422e790ff492d6c59bdcep2@CU686889
6.6e-50FFCP PHASE2:Hg19::chr12:132475501..132475504,+#_14d6a5d582228d4791d597aeb4a6f8f4p@chr12:132475501..132475504, +
6.6e-50FFCP PHASE2:Hg19::chr21:44589339..44589372,-#_14d6a5d582228d4791d597aeb4a6f8f4p@chr21:44589339..44589372, -
6.6e-50FFCP PHASE1:Hg19::chr12:132475501..132475504,+#_14d6a5d582228d4791d597aeb4a6f8f4p@chr12:132475501..132475504, +
6.6e-50FFCP PHASE1:Hg19::chr21:44592842..44592867,-#_14d6a5d582228d4791d597aeb4a6f8f4p1@CU686889
6.6e-50FFCP PHASE1:Hg19::chr21:44589339..44589372,-#_14d6a5d582228d4791d597aeb4a6f8f4p@chr21:44589339..44589372, -
6.6e-50FFCP PHASE2:Hg19::chr21:44592842..44592867,-#_14d6a5d582228d4791d597aeb4a6f8f4p1@CU686889
6.27e-44FFCP PHASE1:Hg19::chr11:31827535..31827565,-#_9d8bda1a242333c9473d2696560537eep11@PAX6
6.27e-44FFCP PHASE2:Hg19::chr11:31827535..31827565,-#_9d8bda1a242333c9473d2696560537eep11@PAX6
1.92e-41FFCP PHASE1:Hg19::chr3:186262166..186262170,-#_acc6c5dd78ac300aad523af6bea5fbd0p1@CRYGS
1.92e-41FFCP PHASE2:Hg19::chr3:186262166..186262170,-#_acc6c5dd78ac300aad523af6bea5fbd0p1@CRYGS
4.94e-40FFCP PHASE1:Hg19::chr5:112173525..112173532,+#_c7ae718a71e62502e6ccd61a8c64fd44p@chr5:112173525..112173532, +
4.94e-40FFCP PHASE2:Hg19::chr5:112173525..112173532,+#_c7ae718a71e62502e6ccd61a8c64fd44p@chr5:112173525..112173532, +
1.62e-37FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_b2b4823a2fc2b395f558f61113b8d576p7@PTPRU
1.62e-37FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_b2b4823a2fc2b395f558f61113b8d576p7@PTPRU
2.1e-35FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_75030ec8fa9bdd9976e4f5839e61730bp3@SIX6
2.1e-35FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_75030ec8fa9bdd9976e4f5839e61730bp3@SIX6
6.73e-35FFCP PHASE2:Hg19::chr14:60975871..60975880,+#_71c218ffe719484b5124129e7650c4a8p4@SIX6
6.73e-35FFCP PHASE1:Hg19::chr14:60975871..60975880,+#_71c218ffe719484b5124129e7650c4a8p4@SIX6
5.06e-34FFCP PHASE2:Hg19::chr11:31667372..31667383,-#_244931b2dc4ba9c62e62792062f1b36ep@chr11:31667372..31667383, -
5.06e-34FFCP PHASE1:Hg19::chr11:31667372..31667383,-#_244931b2dc4ba9c62e62792062f1b36ep@chr11:31667372..31667383, -
8.36e-34FFCP PHASE1:Hg19::chr19:1470631..1470648,-#_f4c6e3f23468956be84aad8d230c7555p@chr19:1470631..1470648, -
8.36e-34FFCP PHASE2:Hg19::chr19:1470631..1470648,-#_f4c6e3f23468956be84aad8d230c7555p@chr19:1470631..1470648, -
5.55e-33FFCP PHASE1:Hg19::chr21:44589135..44589151,+#_4aa0dd26f84d8b29ecbff14c067b76dfp1@CRYAA
5.55e-33FFCP PHASE2:Hg19::chr21:44589135..44589151,+#_4aa0dd26f84d8b29ecbff14c067b76dfp1@CRYAA
9.55e-33FFCP PHASE1:Hg19::chr17:27573875..27573878,+#_a340bac2244af98fa7baec405ac0dd67p1@CRYBA1
9.55e-33FFCP PHASE2:Hg19::chr17:27573875..27573878,+#_a340bac2244af98fa7baec405ac0dd67p1@CRYBA1
2.74e-29FFCP PHASE2:Hg19::chr2:45168589..45168601,-#_9d735e246c8f66e92a89fd0409a28cf6p2@ENST00000456467
2.74e-29FFCP PHASE1:Hg19::chr2:45168589..45168601,-#_9d735e246c8f66e92a89fd0409a28cf6p2@ENST00000456467
3.65e-29FFCP PHASE2:Hg19::chr7:107883678..107883689,-#_389f029fec4f1b2873f712ecb943a58bp13@NRCAM
3.65e-29FFCP PHASE1:Hg19::chr7:107883678..107883689,-#_389f029fec4f1b2873f712ecb943a58bp13@NRCAM
7.46e-29FFCP PHASE2:Hg19::chr13:114202163..114202178,+#_4a2bf3cf8e3f58ca46c2298e8f3dc2d6p@chr13:114202163..114202178, +
7.46e-29FFCP PHASE1:Hg19::chr13:114202163..114202178,+#_4a2bf3cf8e3f58ca46c2298e8f3dc2d6p@chr13:114202163..114202178, +
1.36e-28FFCP PHASE1:Hg19::chr3:173116225..173116242,+#_e81d975bd536f53137979ea64c6c376bp10@NLGN1
1.36e-28FFCP PHASE2:Hg19::chr3:173116225..173116242,+#_e81d975bd536f53137979ea64c6c376bp10@NLGN1
2.64e-27FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_251ac97212e5e5888893ba8727b1f547p10@SIX3
2.64e-27FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_251ac97212e5e5888893ba8727b1f547p10@SIX3
8.39e-27FFCP PHASE2:Hg19::chr14:60975858..60975869,+#_2cd5d3bd88681bb61fceed450e62617bp2@SIX6
8.39e-27FFCP PHASE1:Hg19::chr14:60975858..60975869,+#_2cd5d3bd88681bb61fceed450e62617bp2@SIX6
5.56e-26FFCP PHASE2:Hg19::chr1:147374915..147374932,+#_a97d2146e948221d187449ba227eca4cp1@GJA8
5.56e-26FFCP PHASE1:Hg19::chr3:150690809..150690822,-#_a97d2146e948221d187449ba227eca4cp3@CLRN1
5.56e-26FFCP PHASE2:Hg19::chr20:35861148..35861151,+#_a97d2146e948221d187449ba227eca4cp@chr20:35861148..35861151, +
5.56e-26FFCP PHASE1:Hg19::chrX:43587410..43587413,+#_a97d2146e948221d187449ba227eca4cp@chrX:43587410..43587413, +
5.56e-26FFCP PHASE2:Hg19::chr9:75848662..75848671,-#_a97d2146e948221d187449ba227eca4cp@chr9:75848662..75848671, -
5.56e-26FFCP PHASE1:Hg19::chr1:147374915..147374932,+#_a97d2146e948221d187449ba227eca4cp1@GJA8
5.56e-26FFCP PHASE2:Hg19::chr19:40920692..40920700,-#_a97d2146e948221d187449ba227eca4cp@chr19:40920692..40920700, -
5.56e-26FFCP PHASE1:Hg19::chr20:35861148..35861151,+#_a97d2146e948221d187449ba227eca4cp@chr20:35861148..35861151, +
5.56e-26FFCP PHASE2:Hg19::chr3:150690809..150690822,-#_a97d2146e948221d187449ba227eca4cp3@CLRN1
5.56e-26FFCP PHASE1:Hg19::chr9:75848662..75848671,-#_a97d2146e948221d187449ba227eca4cp@chr9:75848662..75848671, -
5.56e-26FFCP PHASE2:Hg19::chrX:43587410..43587413,+#_a97d2146e948221d187449ba227eca4cp@chrX:43587410..43587413, +
5.56e-26FFCP PHASE1:Hg19::chr19:40920692..40920700,-#_a97d2146e948221d187449ba227eca4cp@chr19:40920692..40920700, -
7.14e-26FFCP PHASE1:Hg19::chr5:45038620..45038622,+#_671f4df912aa5319e038348dd8788347p@chr5:45038620..45038622, +
7.14e-26FFCP PHASE2:Hg19::chr3:156322310..156322314,-#_671f4df912aa5319e038348dd8788347p@chr3:156322310..156322314, -
7.14e-26FFCP PHASE2:Hg19::chr19:41727698..41727705,+#_671f4df912aa5319e038348dd8788347p@chr19:41727698..41727705, +
7.14e-26FFCP PHASE2:Hg19::chr7:123198284..123198329,-#_671f4df912aa5319e038348dd8788347p3@NDUFA5
7.14e-26FFCP PHASE2:Hg19::chr21:44592626..44592635,-#_671f4df912aa5319e038348dd8788347p5@CU686889
7.14e-26FFCP PHASE2:Hg19::chr16:17563573..17563582,+#_671f4df912aa5319e038348dd8788347p@chr16:17563573..17563582, +
7.14e-26FFCP PHASE1:Hg19::chr2:693025..693036,+#_671f4df912aa5319e038348dd8788347p@chr2:693025..693036, +
7.14e-26FFCP PHASE1:Hg19::chr16:17563573..17563582,+#_671f4df912aa5319e038348dd8788347p@chr16:17563573..17563582, +
7.14e-26FFCP PHASE1:Hg19::chr11:65361417..65361421,-#_671f4df912aa5319e038348dd8788347p2@KCNK7
7.14e-26FFCP PHASE1:Hg19::chr8:94870047..94870056,+#_671f4df912aa5319e038348dd8788347p30@PDP1
7.14e-26FFCP PHASE2:Hg19::chr9:100057272..100057276,+#_671f4df912aa5319e038348dd8788347p@chr9:100057272..100057276, +
7.14e-26FFCP PHASE2:Hg19::chr19:17137781..17137792,-#_671f4df912aa5319e038348dd8788347p6@CPAMD8
7.14e-26FFCP PHASE1:Hg19::chr5:464155..464205,+#_671f4df912aa5319e038348dd8788347p@chr5:464155..464205, +
7.14e-26FFCP PHASE1:Hg19::chr16:85617064..85617073,-#_671f4df912aa5319e038348dd8788347p@chr16:85617064..85617073, -
7.14e-26FFCP PHASE2:Hg19::chr21:44592750..44592758,-#_671f4df912aa5319e038348dd8788347p4@CU686889
7.14e-26FFCP PHASE2:Hg19::chr4:140656282..140656285,-#_671f4df912aa5319e038348dd8788347p@chr4:140656282..140656285, -
7.14e-26FFCP PHASE1:Hg19::chr21:44592512..44592521,+#_671f4df912aa5319e038348dd8788347p@chr21:44592512..44592521, +
7.14e-26FFCP PHASE1:Hg19::chr21:36253916..36253918,-#_671f4df912aa5319e038348dd8788347p@chr21:36253916..36253918, -
7.14e-26FFCP PHASE2:Hg19::chr13:72440726..72440736,-#_671f4df912aa5319e038348dd8788347p19@DACH1
7.14e-26FFCP PHASE1:Hg19::chr19:41727698..41727705,+#_671f4df912aa5319e038348dd8788347p@chr19:41727698..41727705, +
7.14e-26FFCP PHASE2:Hg19::chr1:45769711..45769721,-#_671f4df912aa5319e038348dd8788347p@chr1:45769711..45769721, -
7.14e-26FFCP PHASE1:Hg19::chr13:72440726..72440736,-#_671f4df912aa5319e038348dd8788347p19@DACH1
7.14e-26FFCP PHASE2:Hg19::chr21:44592358..44592365,+#_671f4df912aa5319e038348dd8788347p@chr21:44592358..44592365, +
7.14e-26FFCP PHASE2:Hg19::chr20:33903184..33903189,-#_671f4df912aa5319e038348dd8788347p11@UQCC
7.14e-26FFCP PHASE2:Hg19::chr2:45154282..45154288,-#_671f4df912aa5319e038348dd8788347p@chr2:45154282..45154288, -
7.14e-26FFCP PHASE2:Hg19::chr10:73406056..73406065,+#_671f4df912aa5319e038348dd8788347p@chr10:73406056..73406065, +
7.14e-26FFCP PHASE1:Hg19::chr3:156322310..156322314,-#_671f4df912aa5319e038348dd8788347p@chr3:156322310..156322314, -
7.14e-26FFCP PHASE2:Hg19::chr21:44592788..44592807,+#_671f4df912aa5319e038348dd8788347p@chr21:44592788..44592807, +
7.14e-26FFCP PHASE1:Hg19::chr19:17137781..17137792,-#_671f4df912aa5319e038348dd8788347p6@CPAMD8
7.14e-26FFCP PHASE1:Hg19::chr9:100057272..100057276,+#_671f4df912aa5319e038348dd8788347p@chr9:100057272..100057276, +
7.14e-26FFCP PHASE1:Hg19::chr7:123198284..123198329,-#_671f4df912aa5319e038348dd8788347p3@NDUFA5
7.14e-26FFCP PHASE1:Hg19::chr21:44592626..44592635,-#_671f4df912aa5319e038348dd8788347p5@CU686889
7.14e-26FFCP PHASE2:Hg19::chr1:86064794..86064797,+#_671f4df912aa5319e038348dd8788347p1@ENST00000426794
7.14e-26FFCP PHASE2:Hg19::chr1:115873480..115873484,+#_671f4df912aa5319e038348dd8788347p@chr1:115873480..115873484, +

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