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{{CL
{{CL
|id=CL:0002598
|alt_id=
|name=bronchial smooth muscle cell
|namespace=cell
|def=
|xref=BTO:0004402
|is_a=CL:0000192
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-06T05:46:39Z
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002598
|is_a=CL:0000192
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=bronchial smooth muscle cell
|namespace=FANTOM
|obo_creation_date=2011-03-06T05:46:39Z
|part_of=UBERON:0002185
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=BTO:0004402
}}
}}

Latest revision as of 16:45, 12 September 2014

Name:bronchial smooth muscle cell
Namespace:FANTOM
Xrefs:
links:
BTO:0004402
Created by:tmeehan
Creation date:2011-03-06T05:46:39Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000192(smooth muscle cell)
part_of:UBERON:0002185(bronchus)



Children


derives from:FF:0000179 (human bronchial smooth muscle cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002598 (bronchial smooth muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.59e-34FFCP PHASE1:Hg19::chr16:72107139..72107149,+#_c30b27e8aed044ff98a8873d49e11bcdp@chr16:72107139..72107149, +
2.59e-34FFCP PHASE2:Hg19::chr16:72107139..72107149,+#_c30b27e8aed044ff98a8873d49e11bcdp@chr16:72107139..72107149, +
7.05e-34FFCP PHASE2:Hg19::chr17:76824975..76824978,-#_de64e7224258f062346d2552699aa86ep@chr17:76824975..76824978, -
7.05e-34FFCP PHASE1:Hg19::chr17:76824975..76824978,-#_de64e7224258f062346d2552699aa86ep@chr17:76824975..76824978, -
8.39e-34FFCP PHASE2:Hg19::chr17:59479934..59479943,+#_f77138cceb472ab7067a97f7c3b52350p@chr17:59479934..59479943, +
8.39e-34FFCP PHASE1:Hg19::chr17:59479934..59479943,+#_f77138cceb472ab7067a97f7c3b52350p@chr17:59479934..59479943, +
7.14e-26FFCP PHASE1:Hg19::chr17:59533618..59533656,+#_dc0db6bdf6e3d8f1126fdbc9295950c2p2@TBX4
7.14e-26FFCP PHASE2:Hg19::chr6:134210772..134210782,+#_dc0db6bdf6e3d8f1126fdbc9295950c2p8@TCF21
7.14e-26FFCP PHASE1:Hg19::chr6:134210772..134210782,+#_dc0db6bdf6e3d8f1126fdbc9295950c2p8@TCF21
7.14e-26FFCP PHASE2:Hg19::chr17:59533618..59533656,+#_dc0db6bdf6e3d8f1126fdbc9295950c2p2@TBX4
9.18e-26FFCP PHASE2:Hg19::chr2:191834349..191834358,-#_6eb3e94d09e66947388c258743505dd6p@chr2:191834349..191834358, -
9.18e-26FFCP PHASE1:Hg19::chr2:191834349..191834358,-#_6eb3e94d09e66947388c258743505dd6p@chr2:191834349..191834358, -
2.08e-21FFCP PHASE1:Hg19::chr17:46671154..46671167,-#_8788fcbc311caa4b719e751f4c2b92c1p4@HOXB5
2.08e-21FFCP PHASE2:Hg19::chr17:46671154..46671167,-#_8788fcbc311caa4b719e751f4c2b92c1p4@HOXB5
5.48e-18FFCP PHASE1:Hg19::chr7:143079562..143079573,+#_692e09de780cf9b725b928f837efcd92p39@ZYX
5.48e-18FFCP PHASE2:Hg19::chr7:143079562..143079573,+#_692e09de780cf9b725b928f837efcd92p39@ZYX
5.82e-18FFCP PHASE2:Hg19::chr12:114845834..114845848,-#_61bd635bcb707e468f5bbfd6078efe71p5@TBX5
5.82e-18FFCP PHASE1:Hg19::chr12:114845834..114845848,-#_61bd635bcb707e468f5bbfd6078efe71p5@TBX5
1.27e-17FFCP PHASE2:Hg19::chr15:33384561..33384569,-#_934857aadc4ffab3b77c504a6b7c37b7p@chr15:33384561..33384569, -
1.27e-17FFCP PHASE1:Hg19::chr15:33384561..33384569,-#_934857aadc4ffab3b77c504a6b7c37b7p@chr15:33384561..33384569, -
3.1e-17FFCP PHASE2:Hg19::chr15:33384583..33384602,-#_da2830665bea9107a9c5213714edc15fp@chr15:33384583..33384602, -
3.1e-17FFCP PHASE1:Hg19::chr15:33384583..33384602,-#_da2830665bea9107a9c5213714edc15fp@chr15:33384583..33384602, -
7.31e-16FFCP PHASE2:Hg19::chr17:46670845..46670856,-#_c6c4986fa790b94098160235799b4868p8@AB464575
7.31e-16FFCP PHASE1:Hg19::chr17:46670845..46670856,-#_c6c4986fa790b94098160235799b4868p8@AB464575
1.33e-15FFCP PHASE1:Hg19::chr3:123518853..123518862,-#_9b6b7bf4b57bb356c36dd0db47772ac4p48@MYLK
1.33e-15FFCP PHASE2:Hg19::chr3:123518853..123518862,-#_9b6b7bf4b57bb356c36dd0db47772ac4p48@MYLK
2.05e-15FFCP PHASE2:Hg19::chr2:102511066..102511072,+#_b2fc6cefc002571722e0fa2133931ca4p@chr2:102511066..102511072, +
2.05e-15FFCP PHASE1:Hg19::chr2:102511066..102511072,+#_b2fc6cefc002571722e0fa2133931ca4p@chr2:102511066..102511072, +
2.74e-15FFCP PHASE2:Hg19::chr20:257430..257434,-#_491afed082978eb86647e6fa1778f085p@chr20:257430..257434, -
2.74e-15FFCP PHASE1:Hg19::chr20:257430..257434,-#_491afed082978eb86647e6fa1778f085p@chr20:257430..257434, -
9.74e-15FFCP PHASE2:Hg19::chr22:41957054..41957063,+#_d1145f609feafd56448a8eead87feb7ep4@CSDC2
9.74e-15FFCP PHASE1:Hg19::chr22:41957054..41957063,+#_d1145f609feafd56448a8eead87feb7ep4@CSDC2
1.04e-14FFCP PHASE2:Hg19::chr3:123518925..123518939,-#_c2ac64fc0cdf1fc51cf57af3ae926bfcp29@MYLK
1.04e-14FFCP PHASE1:Hg19::chr3:123518925..123518939,-#_c2ac64fc0cdf1fc51cf57af3ae926bfcp29@MYLK
7.3e-14FFCP PHASE2:Hg19::chr7:87835758..87835769,-#_95f9da18971dc5c7a291f675f4eea0a3p6@SRI
7.3e-14FFCP PHASE1:Hg19::chr7:87835758..87835769,-#_95f9da18971dc5c7a291f675f4eea0a3p6@SRI
9.4e-14FFCP PHASE2:Hg19::chr15:33384526..33384543,-#_0e19b6f8f41a3b4cfcdb9059afe7a5c8p@chr15:33384526..33384543, -
9.4e-14FFCP PHASE1:Hg19::chr15:33384526..33384543,-#_0e19b6f8f41a3b4cfcdb9059afe7a5c8p@chr15:33384526..33384543, -
1.37e-13FFCP PHASE1:Hg19::chr17:38324198..38324204,+#_24fd3e2307a1da90410283ced762e891p7@CASC3
1.37e-13FFCP PHASE2:Hg19::chr17:38324198..38324204,+#_24fd3e2307a1da90410283ced762e891p7@CASC3
1.55e-13FFCP PHASE2:Hg19::chr19:36245514..36245521,-#_8d4fcee79aa38b49d361f855f1c3be2bp6@CU679244
1.55e-13FFCP PHASE1:Hg19::chr19:36245514..36245521,-#_8d4fcee79aa38b49d361f855f1c3be2bp6@CU679244
2.12e-13FFCP PHASE2:Hg19::chr12:114845970..114846000,+#_5450ee8d99625df4394bae1e909482ecp1@LOC255480
2.12e-13FFCP PHASE1:Hg19::chr12:114845970..114846000,+#_5450ee8d99625df4394bae1e909482ecp1@LOC255480
3.9e-13FFCP PHASE2:Hg19::chr5:92923453..92923465,+#_b2f2de79bcdfc275cfe5e0813323fe2bp@chr5:92923453..92923465, +
3.9e-13FFCP PHASE1:Hg19::chr5:92923453..92923465,+#_b2f2de79bcdfc275cfe5e0813323fe2bp@chr5:92923453..92923465, +
4.89e-12FFCP PHASE2:Hg19::chr17:46670939..46670958,-#_618a6948d8785c803b75d31e831ab1e8p5@AB464575
4.89e-12FFCP PHASE1:Hg19::chr17:46670939..46670958,-#_618a6948d8785c803b75d31e831ab1e8p5@AB464575
6.49e-12FFCP PHASE2:Hg19::chr12:114845810..114845824,-#_103d8ca428ebae617fd5f7d46230b3a3p1@TBX5
6.49e-12FFCP PHASE1:Hg19::chr12:114845810..114845824,-#_103d8ca428ebae617fd5f7d46230b3a3p1@TBX5
6.89e-12FFCP PHASE2:Hg19::chr3:123518900..123518913,-#_8c6fd28ddf1a60231d5e8b21327f4891p18@MYLK
6.89e-12FFCP PHASE1:Hg19::chr3:123518900..123518913,-#_8c6fd28ddf1a60231d5e8b21327f4891p18@MYLK
1.38e-11FFCP PHASE2:Hg19::chr16:67313160..67313175,-#_41e0b69325a56ab133f0042c02ea3a46p@chr16:67313160..67313175, -
1.38e-11FFCP PHASE1:Hg19::chr16:67313160..67313175,-#_41e0b69325a56ab133f0042c02ea3a46p@chr16:67313160..67313175, -
1.42e-11FFCP PHASE2:Hg19::chr17:46627597..46627646,+#_685745156d6e21097ff92c4e08479297p@chr17:46627597..46627646, +
1.42e-11FFCP PHASE1:Hg19::chr17:46627597..46627646,+#_685745156d6e21097ff92c4e08479297p@chr17:46627597..46627646, +
1.81e-11FFCP PHASE1:Hg19::chr3:123519062..123519090,-#_959c437e54486fbb71e80a2e1ee480a1p14@MYLK
1.81e-11FFCP PHASE2:Hg19::chr3:123519062..123519090,-#_959c437e54486fbb71e80a2e1ee480a1p14@MYLK
2.02e-11FFCP PHASE2:Hg19::chr17:59479775..59479790,+#_9ae09460059fffd47583bb4be6e6cde9p@chr17:59479775..59479790, +
2.02e-11FFCP PHASE1:Hg19::chr17:59479775..59479790,+#_9ae09460059fffd47583bb4be6e6cde9p@chr17:59479775..59479790, +
2.23e-11FFCP PHASE1:Hg19::chr6:56013664..56013696,-#_707fc5dcfa9f8c5a551e044bdc06537bp@chr6:56013664..56013696, -
2.23e-11FFCP PHASE2:Hg19::chr6:56013664..56013696,-#_707fc5dcfa9f8c5a551e044bdc06537bp@chr6:56013664..56013696, -
3.46e-11FFCP PHASE2:Hg19::chr3:45067642..45067645,+#_62842d21637905fa1da919a762f6de41p7@CLEC3B
3.46e-11FFCP PHASE1:Hg19::chr3:45067642..45067645,+#_62842d21637905fa1da919a762f6de41p7@CLEC3B
3.7e-11FFCP PHASE2:Hg19::chr6:90378042..90378060,-#_5b446bf724e7ea88e9a07d9a98df57fap@chr6:90378042..90378060, -
3.7e-11FFCP PHASE1:Hg19::chr6:90378042..90378060,-#_5b446bf724e7ea88e9a07d9a98df57fap@chr6:90378042..90378060, -
4.09e-11FFCP PHASE2:Hg19::chr6:90378015..90378029,-#_c26d2c1fb6c9b300c7ca6b12a2ae94dfp@chr6:90378015..90378029, -
4.09e-11FFCP PHASE1:Hg19::chr6:90378015..90378029,-#_c26d2c1fb6c9b300c7ca6b12a2ae94dfp@chr6:90378015..90378029, -
4.52e-11FFCP PHASE1:Hg19::chr17:59474831..59474844,+#_13b233d3940227333128a8c612ad097dp@chr17:59474831..59474844, +
4.52e-11FFCP PHASE2:Hg19::chr17:59474831..59474844,+#_13b233d3940227333128a8c612ad097dp@chr17:59474831..59474844, +
1.59e-10FFCP PHASE1:Hg19::chr3:123518799..123518836,-#_e7fe299f65e7be8f3a09ff95f4d7e2d4p16@MYLK
1.59e-10FFCP PHASE2:Hg19::chr3:123518799..123518836,-#_e7fe299f65e7be8f3a09ff95f4d7e2d4p16@MYLK
1.76e-10FFCP PHASE2:Hg19::chr17:59529743..59529798,+#_c29db4dcc10b61deafcaab512966fd0dp1@TBX4
1.76e-10FFCP PHASE1:Hg19::chr17:59529743..59529798,+#_c29db4dcc10b61deafcaab512966fd0dp1@TBX4
1.89e-10FFCP PHASE2:Hg19::chr7:128499262..128499273,+#_4a44782d449e1a008d0a83cd700ca4f6p@chr7:128499262..128499273, +
1.89e-10FFCP PHASE2:Hg19::chr12:10856713..10856723,-#_4a44782d449e1a008d0a83cd700ca4f6p23@CSDA
1.89e-10FFCP PHASE1:Hg19::chr7:128499262..128499273,+#_4a44782d449e1a008d0a83cd700ca4f6p@chr7:128499262..128499273, +
1.89e-10FFCP PHASE1:Hg19::chr12:10856713..10856723,-#_4a44782d449e1a008d0a83cd700ca4f6p23@CSDA
2.32e-10FFCP PHASE2:Hg19::chr21:47648451..47648462,-#_181f2992652067745ae76bcac8ae2053p3@LSS
2.32e-10FFCP PHASE1:Hg19::chr21:47648451..47648462,-#_181f2992652067745ae76bcac8ae2053p3@LSS
2.49e-10FFCP PHASE2:Hg19::chr11:114121964..114121973,+#_f65813ab080a7c8e839218ac570d5f91p@chr11:114121964..114121973, +
2.49e-10FFCP PHASE1:Hg19::chr11:114121964..114121973,+#_f65813ab080a7c8e839218ac570d5f91p@chr11:114121964..114121973, +
2.72e-10FFCP PHASE2:Hg19::chr2:47452905..47452914,+#_aa2f36d5bf51940de85a884601ec3b44p1@ENST00000444361
2.72e-10FFCP PHASE1:Hg19::chr2:47452905..47452914,+#_aa2f36d5bf51940de85a884601ec3b44p1@ENST00000444361
3.58e-10FFCP PHASE2:Hg19::chr4:1160761..1160774,-#_9279f2b1054a4b8afb9c75f810eb315ep@chr4:1160761..1160774, -
3.58e-10FFCP PHASE1:Hg19::chr4:1160761..1160774,-#_9279f2b1054a4b8afb9c75f810eb315ep@chr4:1160761..1160774, -
3.91e-10FFCP PHASE2:Hg19::chr17:46675344..46675355,-#_4e4ccc6a13d39cc1ff0951cc8dc8d430p9@HOXB6
3.91e-10FFCP PHASE1:Hg19::chr17:46675344..46675355,-#_4e4ccc6a13d39cc1ff0951cc8dc8d430p9@HOXB6
4.17e-10FFCP PHASE1:Hg19::chr15:74218799..74218816,-#_d3fdf38b16a87b6f54baa9fe517fbacbp@chr15:74218799..74218816, -
4.17e-10FFCP PHASE2:Hg19::chr15:74218799..74218816,-#_d3fdf38b16a87b6f54baa9fe517fbacbp@chr15:74218799..74218816, -
9.82e-10FFCP PHASE1:Hg19::chr11:307929..307961,+#_6a91d09f15f287472d8c5f90470877b3p4@IFITM2
9.82e-10FFCP PHASE2:Hg19::chr11:307929..307961,+#_6a91d09f15f287472d8c5f90470877b3p4@IFITM2
1.02e-9FFCP PHASE2:Hg19::chr17:46630377..46630385,+#_cba8b711b84cda94f3441038417622fdp@chr17:46630377..46630385, +
1.02e-9FFCP PHASE1:Hg19::chr17:46630377..46630385,+#_cba8b711b84cda94f3441038417622fdp@chr17:46630377..46630385, +
1.33e-9FFCP PHASE2:Hg19::chr12:7187819..7187830,-#_8a631c98d577f956e588dfdeb4f7a985p@chr12:7187819..7187830, -
1.33e-9FFCP PHASE1:Hg19::chr12:7187819..7187830,-#_8a631c98d577f956e588dfdeb4f7a985p@chr12:7187819..7187830, -
1.44e-9FFCP PHASE2:Hg19::chr5:149425247..149425250,+#_ab2ca92cbfbd14bc247d91b5f85683a5p@chr5:149425247..149425250, +
1.44e-9FFCP PHASE1:Hg19::chr5:149425247..149425250,+#_ab2ca92cbfbd14bc247d91b5f85683a5p@chr5:149425247..149425250, +
1.46e-9FFCP PHASE2:Hg19::chr17:46671504..46671541,-#_3f62023cab122f0a3a3cc6ac690d0d43p2@HOXB5
1.46e-9FFCP PHASE1:Hg19::chr17:46671504..46671541,-#_3f62023cab122f0a3a3cc6ac690d0d43p2@HOXB5

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