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{{CL
{{CL
|id=CL:0000878
|alt_id=
|name=central nervous system macrophage
|namespace=cell;;efo
|def="A tissue-resident macrophage found in the central nervous system." [GO_REF:0000031, PMID:16322748]
|xref=
|is_a=CL:0000864
|synonym="CNS macrophage" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A tissue-resident macrophage found in the central nervous system." [GO_REF:0000031, PMID:16322748]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000878
|is_a=CL:0000864 ;;CL:0002319
|is_obsolete=
|located_in=
|located_in=
|name=central nervous system macrophage
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001017
|part_of=UBERON:0001017
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="CNS macrophage" EXACT []
|union_of=
|xref=
}}
}}

Latest revision as of 16:38, 12 September 2014

Name:central nervous system macrophage
Namespace:FANTOM
Definition:"A tissue-resident macrophage found in the central nervous system." [GO_REF:0000031, PMID:16322748]
Synonyms: "CNS macrophage" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000864(tissue-resident macrophage),CL:0002319(neural cell)
part_of:UBERON:0001017(central nervous system)



Children


is a:CL:0000129 (microglial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000878 (central nervous system macrophage), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr12:112646729..112646768,+#_0000aedb54d2e39a1b038d271ff4dea4p@chr12:112646729..112646768, +
1.87e-86FFCP PHASE2:Mm9::chr12:112646729..112646768,+#_0000aedb54d2e39a1b038d271ff4dea4p@chr12:112646729..112646768, +
1.87e-86FFCP PHASE2:Mm9::chr8:113227136..113227143,+#_0000aedb54d2e39a1b038d271ff4dea4p@chr8:113227136..113227143, +
1.87e-86FFCP PHASE1:Mm9::chr8:113227136..113227143,+#_0000aedb54d2e39a1b038d271ff4dea4p@chr8:113227136..113227143, +
1.68e-58FFCP PHASE1:Mm9::chr10:75403311..75403323,-#_6f7b5471adfdca3a201363b0e108014ep3@ENSMUST00000059658, p3@uc007fts.1
1.68e-58FFCP PHASE2:Mm9::chr10:75403311..75403323,-#_6f7b5471adfdca3a201363b0e108014ep3@ENSMUST00000059658, p3@uc007fts.1
1.66e-44FFCP PHASE1:Mm9::chr10:59862550..59862553,+#_e374ee7b6103cf1754d65a25e7f69f12p3@Gm17455
1.66e-44FFCP PHASE1:Mm9::chr15:88808274..88808289,-#_e374ee7b6103cf1754d65a25e7f69f12p@chr15:88808274..88808289, -
1.66e-44FFCP PHASE1:Mm9::chr11:102749101..102749112,-#_e374ee7b6103cf1754d65a25e7f69f12p@chr11:102749101..102749112, -
1.66e-44FFCP PHASE2:Mm9::chr10:59862550..59862553,+#_e374ee7b6103cf1754d65a25e7f69f12p3@Gm17455
1.66e-44FFCP PHASE2:Mm9::chr11:102749101..102749112,-#_e374ee7b6103cf1754d65a25e7f69f12p@chr11:102749101..102749112, -
1.66e-44FFCP PHASE2:Mm9::chr15:88808274..88808289,-#_e374ee7b6103cf1754d65a25e7f69f12p@chr15:88808274..88808289, -
2.75e-44FFCP PHASE2:Mm9::chr4:135525988..135526004,-#_4f88612466ab3fc6149c7514a2da4c49p@chr4:135525988..135526004, -
2.75e-44FFCP PHASE1:Mm9::chr4:135525988..135526004,-#_4f88612466ab3fc6149c7514a2da4c49p@chr4:135525988..135526004, -
4.55e-44FFCP PHASE1:Mm9::chr17:48934179..48934192,-#_b6506777b3a92b1ad8cdcc9f5ac0f0adp@chr17:48934179..48934192, -
4.55e-44FFCP PHASE2:Mm9::chr17:48934179..48934192,-#_b6506777b3a92b1ad8cdcc9f5ac0f0adp@chr17:48934179..48934192, -
7.52e-44FFCP PHASE2:Mm9::chr11:94506584..94506586,+#_4ebb798cac8043ce2cecb13241809d4bp@chr11:94506584..94506586, +
7.52e-44FFCP PHASE1:Mm9::chr11:94506584..94506586,+#_4ebb798cac8043ce2cecb13241809d4bp@chr11:94506584..94506586, +
4.23e-36FFCP PHASE2:Mm9::chr11:102749254..102749263,-#_92d754aabdc5e5d7d2b89fb8117c3dbfp@chr11:102749254..102749263, -
4.23e-36FFCP PHASE1:Mm9::chr11:102749254..102749263,-#_92d754aabdc5e5d7d2b89fb8117c3dbfp@chr11:102749254..102749263, -
2.13e-35FFCP PHASE1:Mm9::chr16:15895800..15895814,-#_7bf271adbaafcc0b24fd3cfeb4f67230p@chr16:15895800..15895814, -
2.13e-35FFCP PHASE2:Mm9::chr16:15895800..15895814,-#_7bf271adbaafcc0b24fd3cfeb4f67230p@chr16:15895800..15895814, -
4.75e-35FFCP PHASE2:Mm9::chr11:75244815..75244826,-#_65f73cafab2fb73ba70a3997de551f1dp@chr11:75244815..75244826, -
4.75e-35FFCP PHASE1:Mm9::chr11:75244815..75244826,-#_65f73cafab2fb73ba70a3997de551f1dp@chr11:75244815..75244826, -
1.73e-30FFCP PHASE2:Mm9::chr11:45567111..45567116,-#_096eef911f3979fa957430d42241f648p@chr11:45567111..45567116, -
1.73e-30FFCP PHASE1:Mm9::chr11:45567111..45567116,-#_096eef911f3979fa957430d42241f648p@chr11:45567111..45567116, -
3.41e-30FFCP PHASE1:Mm9::chr17:35822365..35822376,-#_f16923589134c47b64eea4006e01f8b0p@chr17:35822365..35822376, -
3.41e-30FFCP PHASE2:Mm9::chr17:35822365..35822376,-#_f16923589134c47b64eea4006e01f8b0p@chr17:35822365..35822376, -
3.41e-30FFCP PHASE2:Mm9::chr9:103595089..103595100,-#_f16923589134c47b64eea4006e01f8b0p4@Tmem108
3.41e-30FFCP PHASE1:Mm9::chr9:103595089..103595100,-#_f16923589134c47b64eea4006e01f8b0p4@Tmem108
4.77e-30FFCP PHASE2:Mm9::chr11:102754448..102754459,-#_16cf7d12d88051eb747a31ad85447532p@chr11:102754448..102754459, -
4.77e-30FFCP PHASE1:Mm9::chr11:102754448..102754459,-#_16cf7d12d88051eb747a31ad85447532p@chr11:102754448..102754459, -
6.69e-30FFCP PHASE1:Mm9::chr7:56865136..56865147,+#_1bf1a4f64578c4476148170a3d44ec8cp@chr7:56865136..56865147, +
6.69e-30FFCP PHASE2:Mm9::chr7:56865136..56865147,+#_1bf1a4f64578c4476148170a3d44ec8cp@chr7:56865136..56865147, +
1.31e-29FFCP PHASE1:Mm9::chr4:136452258..136452269,-#_4c9c1f56ec5c2281312aaf9c5e864961p@chr4:136452258..136452269, -
1.31e-29FFCP PHASE2:Mm9::chr4:136452258..136452269,-#_4c9c1f56ec5c2281312aaf9c5e864961p@chr4:136452258..136452269, -
1.78e-26FFCP PHASE2:Mm9::chr11:102754827..102754845,-#_f7cdfce51b04266e5af3519b6b5a2b78p@chr11:102754827..102754845, -
1.78e-26FFCP PHASE1:Mm9::chr11:102754827..102754845,-#_f7cdfce51b04266e5af3519b6b5a2b78p@chr11:102754827..102754845, -
2.38e-26FFCP PHASE2:Mm9::chr11:102750776..102750792,-#_0e20019a72d4509f5a28126ad910fa0bp@chr11:102750776..102750792, -
2.38e-26FFCP PHASE1:Mm9::chr11:102750776..102750792,-#_0e20019a72d4509f5a28126ad910fa0bp@chr11:102750776..102750792, -
4.27e-26FFCP PHASE2:Mm9::chr11:102807862..102807882,-#_c574b338cdecbcb46576841f68d07969p4@C1ql1
4.27e-26FFCP PHASE1:Mm9::chr11:102807862..102807882,-#_c574b338cdecbcb46576841f68d07969p4@C1ql1
7.61e-26FFCP PHASE2:Mm9::chr11:32036107..32036145,-#_493120c352bf05b58a4afc2d83a3130fp@chr11:32036107..32036145, -
7.61e-26FFCP PHASE1:Mm9::chr11:32036107..32036145,-#_493120c352bf05b58a4afc2d83a3130fp@chr11:32036107..32036145, -
1.02e-25FFCP PHASE2:Mm9::chr7:31844871..31844895,+#_4151d1e0e98406a17becea3ebbaefbddp9@Lgi4
1.02e-25FFCP PHASE1:Mm9::chr7:31844871..31844895,+#_4151d1e0e98406a17becea3ebbaefbddp9@Lgi4
1.35e-25FFCP PHASE2:Mm9::chr1:72873192..72873206,+#_327702307f67254ab2b3922949e2f78cp@chr1:72873192..72873206, +
1.35e-25FFCP PHASE1:Mm9::chr8:28132545..28132551,+#_327702307f67254ab2b3922949e2f78cp@chr8:28132545..28132551, +
1.35e-25FFCP PHASE1:Mm9::chr1:72873192..72873206,+#_327702307f67254ab2b3922949e2f78cp@chr1:72873192..72873206, +
1.35e-25FFCP PHASE1:Mm9::chr8:125951458..125951466,-#_327702307f67254ab2b3922949e2f78cp@chr8:125951458..125951466, -
1.35e-25FFCP PHASE2:Mm9::chr8:125951458..125951466,-#_327702307f67254ab2b3922949e2f78cp@chr8:125951458..125951466, -
1.35e-25FFCP PHASE2:Mm9::chr8:28132545..28132551,+#_327702307f67254ab2b3922949e2f78cp@chr8:28132545..28132551, +
1.8e-25FFCP PHASE1:Mm9::chr1:34754390..34754396,+#_aea1ba3ef9af39ffa5b9d54d265018b5p@chr1:34754390..34754396, +
1.8e-25FFCP PHASE2:Mm9::chr1:174128785..174128802,+#_aea1ba3ef9af39ffa5b9d54d265018b5p@chr1:174128785..174128802, +
1.8e-25FFCP PHASE1:Mm9::chr1:174128785..174128802,+#_aea1ba3ef9af39ffa5b9d54d265018b5p@chr1:174128785..174128802, +
1.8e-25FFCP PHASE2:Mm9::chr1:34754390..34754396,+#_aea1ba3ef9af39ffa5b9d54d265018b5p@chr1:34754390..34754396, +
3.19e-25FFCP PHASE2:Mm9::chr8:125956332..125956339,-#_252c12ad9de4dd4dc6fe52621047ba1ap@chr8:125956332..125956339, -
3.19e-25FFCP PHASE2:Mm9::chr8:125951545..125951559,-#_252c12ad9de4dd4dc6fe52621047ba1ap@chr8:125951545..125951559, -
3.19e-25FFCP PHASE1:Mm9::chr8:125952002..125952012,-#_252c12ad9de4dd4dc6fe52621047ba1ap@chr8:125952002..125952012, -
3.19e-25FFCP PHASE1:Mm9::chr8:125952310..125952320,+#_252c12ad9de4dd4dc6fe52621047ba1ap@chr8:125952310..125952320, +
3.19e-25FFCP PHASE1:Mm9::chr8:125956332..125956339,-#_252c12ad9de4dd4dc6fe52621047ba1ap@chr8:125956332..125956339, -
3.19e-25FFCP PHASE1:Mm9::chr8:125951545..125951559,-#_252c12ad9de4dd4dc6fe52621047ba1ap@chr8:125951545..125951559, -
3.19e-25FFCP PHASE2:Mm9::chr8:125952002..125952012,-#_252c12ad9de4dd4dc6fe52621047ba1ap@chr8:125952002..125952012, -
3.19e-25FFCP PHASE2:Mm9::chr8:125952310..125952320,+#_252c12ad9de4dd4dc6fe52621047ba1ap@chr8:125952310..125952320, +
5.1e-23FFCP PHASE1:Mm9::chr11:69414608..69414617,-#_504d308e832eb33838476916fe03ce64p@chr11:69414608..69414617, -
5.1e-23FFCP PHASE2:Mm9::chr11:69414608..69414617,-#_504d308e832eb33838476916fe03ce64p@chr11:69414608..69414617, -
8.47e-23FFCP PHASE1:Mm9::chr3:87067576..87067584,-#_ff9ca5b5ea0cabb399d13b7b282665c9p3@Fcrls
8.47e-23FFCP PHASE1:Mm9::chr3:87067625..87067636,-#_ff9ca5b5ea0cabb399d13b7b282665c9p2@Fcrls
8.47e-23FFCP PHASE2:Mm9::chr3:87067576..87067584,-#_ff9ca5b5ea0cabb399d13b7b282665c9p3@Fcrls
8.47e-23FFCP PHASE1:Mm9::chr4:136452194..136452198,-#_ff9ca5b5ea0cabb399d13b7b282665c9p@chr4:136452194..136452198, -
8.47e-23FFCP PHASE2:Mm9::chr4:136452194..136452198,-#_ff9ca5b5ea0cabb399d13b7b282665c9p@chr4:136452194..136452198, -
8.47e-23FFCP PHASE1:Mm9::chr4:136436677..136436688,-#_ff9ca5b5ea0cabb399d13b7b282665c9p@chr4:136436677..136436688, -
8.47e-23FFCP PHASE2:Mm9::chr4:136436677..136436688,-#_ff9ca5b5ea0cabb399d13b7b282665c9p@chr4:136436677..136436688, -
8.47e-23FFCP PHASE2:Mm9::chr3:87067625..87067636,-#_ff9ca5b5ea0cabb399d13b7b282665c9p2@Fcrls
9.5e-23FFCP PHASE1:Mm9::chr8:87232404..87232415,-#_2354ddd9bc02a46a2a1aabe9ceab61d3p22@Nfix
9.5e-23FFCP PHASE2:Mm9::chr8:87232404..87232415,-#_2354ddd9bc02a46a2a1aabe9ceab61d3p22@Nfix
9.5e-23FFCP PHASE2:Mm9::chr8:96678044..96678046,-#_2354ddd9bc02a46a2a1aabe9ceab61d3p@chr8:96678044..96678046, -
9.5e-23FFCP PHASE1:Mm9::chr15:103345675..103345685,+#_2354ddd9bc02a46a2a1aabe9ceab61d3p10@Pde1b
9.5e-23FFCP PHASE1:Mm9::chr17:24856898..24856901,+#_2354ddd9bc02a46a2a1aabe9ceab61d3p3@Gm10420, p3@Gm5786, p3@Gm8842, p3@Rps2
9.5e-23FFCP PHASE2:Mm9::chr9:106363021..106363029,+#_2354ddd9bc02a46a2a1aabe9ceab61d3p11@Pcbp4
9.5e-23FFCP PHASE2:Mm9::chr5:123689685..123689727,+#_2354ddd9bc02a46a2a1aabe9ceab61d3p@chr5:123689685..123689727, +
9.5e-23FFCP PHASE2:Mm9::chr19:6497758..6497764,+#_2354ddd9bc02a46a2a1aabe9ceab61d3p17@Nrxn2
9.5e-23FFCP PHASE2:Mm9::chr17:24856898..24856901,+#_2354ddd9bc02a46a2a1aabe9ceab61d3p3@Gm10420, p3@Gm5786, p3@Gm8842, p3@Rps2
9.5e-23FFCP PHASE1:Mm9::chr19:6497758..6497764,+#_2354ddd9bc02a46a2a1aabe9ceab61d3p17@Nrxn2
9.5e-23FFCP PHASE2:Mm9::chr15:103345675..103345685,+#_2354ddd9bc02a46a2a1aabe9ceab61d3p10@Pde1b
9.5e-23FFCP PHASE1:Mm9::chr8:96678044..96678046,-#_2354ddd9bc02a46a2a1aabe9ceab61d3p@chr8:96678044..96678046, -
9.5e-23FFCP PHASE1:Mm9::chr5:123689685..123689727,+#_2354ddd9bc02a46a2a1aabe9ceab61d3p@chr5:123689685..123689727, +
9.5e-23FFCP PHASE1:Mm9::chr9:106363021..106363029,+#_2354ddd9bc02a46a2a1aabe9ceab61d3p11@Pcbp4
1.4e-22FFCP PHASE1:Mm9::chr8:11006242..11006246,-#_49094d14597ed113696996afb683e872p@chr8:11006242..11006246, -
1.4e-22FFCP PHASE2:Mm9::chr8:11006242..11006246,-#_49094d14597ed113696996afb683e872p@chr8:11006242..11006246, -
1.8e-22FFCP PHASE1:Mm9::chr19:8788816..8788826,-#_97b3c2842158e33391cfc1f9cb9e88cap14@Slc3a2
1.8e-22FFCP PHASE2:Mm9::chr19:8788816..8788826,-#_97b3c2842158e33391cfc1f9cb9e88cap14@Slc3a2
2.32e-22FFCP PHASE1:Mm9::chr6:48997958..48997979,-#_f24749497caeb0ab6e61560e00873b8ep@chr6:48997958..48997979, -
2.32e-22FFCP PHASE1:Mm9::chr11:69478859..69478867,-#_f24749497caeb0ab6e61560e00873b8ep@chr11:69478859..69478867, -
2.32e-22FFCP PHASE2:Mm9::chr11:69478859..69478867,-#_f24749497caeb0ab6e61560e00873b8ep@chr11:69478859..69478867, -
2.32e-22FFCP PHASE2:Mm9::chr6:48997958..48997979,-#_f24749497caeb0ab6e61560e00873b8ep@chr6:48997958..48997979, -
2.97e-22FFCP PHASE2:Mm9::chr1:173164773..173164781,-#_5e74f27acb80d8c6a8214d74a9f88d34p3@Fcer1g
2.97e-22FFCP PHASE1:Mm9::chr1:173164773..173164781,-#_5e74f27acb80d8c6a8214d74a9f88d34p3@Fcer1g
4.07e-21FFCP PHASE1:Mm9::chr11:102749020..102749031,-#_844b866cd3eeaf933ad4ef94fefadce2p@chr11:102749020..102749031, -
4.07e-21FFCP PHASE2:Mm9::chr11:102749020..102749031,-#_844b866cd3eeaf933ad4ef94fefadce2p@chr11:102749020..102749031, -

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