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{{CL
{{CL
|id=CL:0002601
|alt_id=
|name=uterine smooth muscle cell
|namespace=cell
|def="A smooth muscle cell of the uterus." [GOC:tfm]
|xref=
|is_a=CL:0000192
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-06T05:53:28Z
|def="A smooth muscle cell of the uterus." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002601
|is_a=CL:0000192
|is_obsolete=
|located_in=
|located_in=
|name=uterine smooth muscle cell
|namespace=FANTOM
|obo_creation_date=2011-03-06T05:53:28Z
|part_of=UBERON:0000995
|part_of=UBERON:0000995
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:45, 12 September 2014

Name:uterine smooth muscle cell
Namespace:FANTOM
Definition:"A smooth muscle cell of the uterus." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T05:53:28Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000192(smooth muscle cell)
part_of:UBERON:0000995(uterus)



Children


derives from:FF:0000185 (human uterine smooth muscle cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002601 (uterine smooth muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.55e-98FFCP PHASE1:Hg19::chr4:44873786..44873795,+#_0ddbd3e971061e2fc2979d367b0670c1p@chr4:44873786..44873795, +
2.55e-98FFCP PHASE2:Hg19::chr6:23177297..23177304,-#_0ddbd3e971061e2fc2979d367b0670c1p2@ENST00000420572
2.55e-98FFCP PHASE1:Hg19::chr6:23177297..23177304,-#_0ddbd3e971061e2fc2979d367b0670c1p2@ENST00000420572
2.55e-98FFCP PHASE1:Hg19::chr9:95005495..95005497,-#_0ddbd3e971061e2fc2979d367b0670c1p14@IARS
2.55e-98FFCP PHASE2:Hg19::chr9:95005495..95005497,-#_0ddbd3e971061e2fc2979d367b0670c1p14@IARS
2.55e-98FFCP PHASE2:Hg19::chr4:44873786..44873795,+#_0ddbd3e971061e2fc2979d367b0670c1p@chr4:44873786..44873795, +
3.99e-50FFCP PHASE2:Hg19::chr10:69896459..69896470,+#_8496b8b847481c64cd212c08669226cdp@chr10:69896459..69896470, +
3.99e-50FFCP PHASE1:Hg19::chr10:69896459..69896470,+#_8496b8b847481c64cd212c08669226cdp@chr10:69896459..69896470, +
6.58e-50FFCP PHASE2:Hg19::chr15:40702995..40703001,+#_ddde0d764ee5a43558571370c694a084p5@IVD
6.58e-50FFCP PHASE1:Hg19::chr15:40702995..40703001,+#_ddde0d764ee5a43558571370c694a084p5@IVD
6.58e-50FFCP PHASE2:Hg19::chr4:891819..891820,-#_ddde0d764ee5a43558571370c694a084p@chr4:891819..891820, -
6.58e-50FFCP PHASE1:Hg19::chr4:891819..891820,-#_ddde0d764ee5a43558571370c694a084p@chr4:891819..891820, -
1.48e-40FFCP PHASE2:Hg19::chr7:99951104..99951109,+#_703934d4f63c8ebe96051aa2fef9f159p5@PILRB
1.48e-40FFCP PHASE1:Hg19::chr7:99951104..99951109,+#_703934d4f63c8ebe96051aa2fef9f159p5@PILRB
1.48e-40FFCP PHASE2:Hg19::chr12:52099406..52099409,+#_703934d4f63c8ebe96051aa2fef9f159p@chr12:52099406..52099409, +
1.48e-40FFCP PHASE1:Hg19::chr12:52099406..52099409,+#_703934d4f63c8ebe96051aa2fef9f159p@chr12:52099406..52099409, +
2.21e-40FFCP PHASE2:Hg19::chr16:86612112..86612123,+#_0e468a0cf4f87c6470f848b4d25ad9b6p5@FOXL1
2.21e-40FFCP PHASE1:Hg19::chr16:86612112..86612123,+#_0e468a0cf4f87c6470f848b4d25ad9b6p5@FOXL1
3.3e-40FFCP PHASE1:Hg19::chr3:108160535..108160548,-#_23db0ab48b7f5e66f8e27be68e755c53p@chr3:108160535..108160548, -
3.3e-40FFCP PHASE2:Hg19::chr3:108160535..108160548,-#_23db0ab48b7f5e66f8e27be68e755c53p@chr3:108160535..108160548, -
3.3e-40FFCP PHASE1:Hg19::chr9:104296243..104296258,+#_23db0ab48b7f5e66f8e27be68e755c53p15@RNF20
3.3e-40FFCP PHASE2:Hg19::chr9:104296243..104296258,+#_23db0ab48b7f5e66f8e27be68e755c53p15@RNF20
1.84e-34FFCP PHASE2:Hg19::chr4:43341736..43341745,+#_2b4f8c93c42ee8d2934333136fdba67cp@chr4:43341736..43341745, +
1.84e-34FFCP PHASE1:Hg19::chr4:43341736..43341745,+#_2b4f8c93c42ee8d2934333136fdba67cp@chr4:43341736..43341745, +
7.06e-34FFCP PHASE1:Hg19::chr1:36603393..36603397,-#_1e29f44c9adef78271951d99799de975p@chr1:36603393..36603397, -
7.06e-34FFCP PHASE2:Hg19::chr1:36603393..36603397,-#_1e29f44c9adef78271951d99799de975p@chr1:36603393..36603397, -
7.06e-34FFCP PHASE1:Hg19::chr18:61445190..61445203,+#_1e29f44c9adef78271951d99799de975p11@SERPINB7
7.06e-34FFCP PHASE2:Hg19::chr18:61445190..61445203,+#_1e29f44c9adef78271951d99799de975p11@SERPINB7
4.2e-29FFCP PHASE1:Hg19::chr3:141150971..141150978,+#_445228ff3b48836cc953372e3cd79768p60@ZBTB38
4.2e-29FFCP PHASE2:Hg19::chr3:141150971..141150978,+#_445228ff3b48836cc953372e3cd79768p60@ZBTB38
4.61e-26FFCP PHASE2:Hg19::chr12:114385135..114385139,-#_7f578fe49aad9decb29dd9d92cac44dbp@chr12:114385135..114385139, -
4.61e-26FFCP PHASE1:Hg19::chr12:114385135..114385139,-#_7f578fe49aad9decb29dd9d92cac44dbp@chr12:114385135..114385139, -
4.61e-26FFCP PHASE2:Hg19::chr16:87400976..87400979,-#_7f578fe49aad9decb29dd9d92cac44dbp@chr16:87400976..87400979, -
4.61e-26FFCP PHASE1:Hg19::chr16:87400976..87400979,-#_7f578fe49aad9decb29dd9d92cac44dbp@chr16:87400976..87400979, -
5.93e-26FFCP PHASE2:Hg19::chr9:139282891..139282896,-#_ffda0e992824bf5d304bd3832b15f49ap@chr9:139282891..139282896, -
5.93e-26FFCP PHASE1:Hg19::chr9:139282891..139282896,-#_ffda0e992824bf5d304bd3832b15f49ap@chr9:139282891..139282896, -
9.79e-26FFCP PHASE1:Hg19::chr20:4229240..4229260,-#_490bb211cffde7f6fb23243fa1373b54p2@ADRA1D
9.79e-26FFCP PHASE2:Hg19::chr20:4229240..4229260,-#_490bb211cffde7f6fb23243fa1373b54p2@ADRA1D
9.79e-26FFCP PHASE2:Hg19::chr14:54910759..54910764,+#_490bb211cffde7f6fb23243fa1373b54p@chr14:54910759..54910764, +
9.79e-26FFCP PHASE1:Hg19::chr14:54910759..54910764,+#_490bb211cffde7f6fb23243fa1373b54p@chr14:54910759..54910764, +
1.26e-25FFCP PHASE2:Hg19::chr7:73106975..73106980,+#_6fe186bc39b81872ab3313af36831020p@chr7:73106975..73106980, +
1.26e-25FFCP PHASE1:Hg19::chr7:73106975..73106980,+#_6fe186bc39b81872ab3313af36831020p@chr7:73106975..73106980, +
1.26e-25FFCP PHASE1:Hg19::chr2:220386017..220386029,+#_6fe186bc39b81872ab3313af36831020p@chr2:220386017..220386029, +
1.26e-25FFCP PHASE2:Hg19::chr2:220386017..220386029,+#_6fe186bc39b81872ab3313af36831020p@chr2:220386017..220386029, +
1.07e-23FFCP PHASE2:Hg19::chr4:43341753..43341762,+#_b9a0d7f720ecdf9695438e1ef1192d9dp@chr4:43341753..43341762, +
1.07e-23FFCP PHASE1:Hg19::chr4:43341753..43341762,+#_b9a0d7f720ecdf9695438e1ef1192d9dp@chr4:43341753..43341762, +
5.13e-23FFCP PHASE2:Hg19::chr12:22093912..22093927,-#_92f73ff0d9cbbc6b26f49160d8550b9cp@chr12:22093912..22093927, -
5.13e-23FFCP PHASE1:Hg19::chr12:22093912..22093927,-#_92f73ff0d9cbbc6b26f49160d8550b9cp@chr12:22093912..22093927, -
6.4e-23FFCP PHASE2:Hg19::chr7:82471253..82471268,-#_07815d2b606f284c0a70e3eeb3f8288ep@chr7:82471253..82471268, -
6.4e-23FFCP PHASE1:Hg19::chr7:82471253..82471268,-#_07815d2b606f284c0a70e3eeb3f8288ep@chr7:82471253..82471268, -
2.82e-21FFCP PHASE1:Hg19::chr22:44708774..44708788,-#_f56e092de4b43afe864e42df41277cfcp3@KIAA1644
2.82e-21FFCP PHASE2:Hg19::chr22:44708774..44708788,-#_f56e092de4b43afe864e42df41277cfcp3@KIAA1644
2.82e-21FFCP PHASE1:Hg19::chr1:152627927..152627931,+#_f56e092de4b43afe864e42df41277cfcp1@LINC00302
2.82e-21FFCP PHASE2:Hg19::chr1:152627927..152627931,+#_f56e092de4b43afe864e42df41277cfcp1@LINC00302
6.31e-21FFCP PHASE1:Hg19::chr1:99387558..99387571,-#_f4a17c8c42684ac6a9f564ba32089e6ep@chr1:99387558..99387571, -
6.31e-21FFCP PHASE2:Hg19::chr1:99387558..99387571,-#_f4a17c8c42684ac6a9f564ba32089e6ep@chr1:99387558..99387571, -
9.43e-21FFCP PHASE2:Hg19::chr12:2378229..2378236,-#_2cbe6eff4f881efa2003f8ee91fd8fb2p@chr12:2378229..2378236, -
9.43e-21FFCP PHASE1:Hg19::chr12:2378229..2378236,-#_2cbe6eff4f881efa2003f8ee91fd8fb2p@chr12:2378229..2378236, -
3.25e-19FFCP PHASE1:Hg19::chr15:37387034..37387043,+#_d29a7e0d2d0654c4e534db227c4b786ep@chr15:37387034..37387043, +
3.25e-19FFCP PHASE2:Hg19::chr7:81319728..81319744,-#_d29a7e0d2d0654c4e534db227c4b786ep@chr7:81319728..81319744, -
3.25e-19FFCP PHASE1:Hg19::chr7:81319728..81319744,-#_d29a7e0d2d0654c4e534db227c4b786ep@chr7:81319728..81319744, -
3.25e-19FFCP PHASE2:Hg19::chr15:37387034..37387043,+#_d29a7e0d2d0654c4e534db227c4b786ep@chr15:37387034..37387043, +
4.69e-19FFCP PHASE2:Hg19::chr4:87374458..87374467,-#_b83e348cab6fce1b81ac1b302885fab2p19@MAPK10
4.69e-19FFCP PHASE1:Hg19::chr4:87374458..87374467,-#_b83e348cab6fce1b81ac1b302885fab2p19@MAPK10
6.23e-18FFCP PHASE1:Hg19::chr7:100806494..100806505,-#_f5c2940ad66af33f957c930b78d9967ep@chr7:100806494..100806505, -
6.23e-18FFCP PHASE2:Hg19::chr7:100806494..100806505,-#_f5c2940ad66af33f957c930b78d9967ep@chr7:100806494..100806505, -
1.03e-17FFCP PHASE2:Hg19::chr4:28621802..28621808,+#_bb411fa14f9fd987f8820c910ace8346p@chr4:28621802..28621808, +
1.03e-17FFCP PHASE1:Hg19::chr4:28621802..28621808,+#_bb411fa14f9fd987f8820c910ace8346p@chr4:28621802..28621808, +
1.22e-17FFCP PHASE2:Hg19::chr6:130088354..130088379,-#_c1bdf9bfbbecb8c7395d5791adbb6b32p@chr6:130088354..130088379, -
1.22e-17FFCP PHASE1:Hg19::chr9:18771731..18771735,+#_c1bdf9bfbbecb8c7395d5791adbb6b32p@chr9:18771731..18771735, +
1.22e-17FFCP PHASE2:Hg19::chr9:18771731..18771735,+#_c1bdf9bfbbecb8c7395d5791adbb6b32p@chr9:18771731..18771735, +
1.22e-17FFCP PHASE1:Hg19::chr6:130088354..130088379,-#_c1bdf9bfbbecb8c7395d5791adbb6b32p@chr6:130088354..130088379, -
1.22e-17FFCP PHASE2:Hg19::chr5:176919399..176919410,-#_c1bdf9bfbbecb8c7395d5791adbb6b32p31@PDLIM7
1.22e-17FFCP PHASE1:Hg19::chr5:176919399..176919410,-#_c1bdf9bfbbecb8c7395d5791adbb6b32p31@PDLIM7
1.44e-17FFCP PHASE2:Hg19::chr15:72534918..72534961,-#_900c03c95e062668392197acefa3623ap@chr15:72534918..72534961, -
1.44e-17FFCP PHASE1:Hg19::chr15:72534918..72534961,-#_900c03c95e062668392197acefa3623ap@chr15:72534918..72534961, -
1.7e-17FFCP PHASE1:Hg19::chr1:226496898..226496907,-#_70e3aed0fa7ac6bf239c1ff038d441b2p3@LIN9
1.7e-17FFCP PHASE2:Hg19::chr1:226496898..226496907,-#_70e3aed0fa7ac6bf239c1ff038d441b2p3@LIN9
1.93e-16FFCP PHASE1:Hg19::chr9:137702153..137702157,+#_78c12630f07893ae10da9cdb8ea849b0p@chr9:137702153..137702157, +
1.93e-16FFCP PHASE2:Hg19::chr9:137702153..137702157,+#_78c12630f07893ae10da9cdb8ea849b0p@chr9:137702153..137702157, +
2.63e-16FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_b1a7491b4d45cebed6641f9ea14c294ep@chr7:140227349..140227360, -
2.63e-16FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_b1a7491b4d45cebed6641f9ea14c294ep@chr7:140227349..140227360, -
2.63e-16FFCP PHASE1:Hg19::chr17:79212884..79212895,-#_b1a7491b4d45cebed6641f9ea14c294ep2@C17orf56
2.63e-16FFCP PHASE2:Hg19::chr17:79212884..79212895,-#_b1a7491b4d45cebed6641f9ea14c294ep2@C17orf56
3.07e-16FFCP PHASE2:Hg19::chr7:150652924..150652927,-#_5e08ff98d91f3148db0b0e5c36bb38c8p5@KCNH2
3.07e-16FFCP PHASE1:Hg19::chr7:150652924..150652927,-#_5e08ff98d91f3148db0b0e5c36bb38c8p5@KCNH2
7.46e-16FFCP PHASE2:Hg19::chr1:152670795..152670806,+#_0715a9ba718a4e4224a3bf3459a20a64p2@LCE2A
7.46e-16FFCP PHASE1:Hg19::chr1:152670795..152670806,+#_0715a9ba718a4e4224a3bf3459a20a64p2@LCE2A
2.06e-15FFCP PHASE1:Hg19::chr3:138665774..138665786,-#_a6f067a54c411c9ad6652ba37aec530cp5@FOXL2
2.06e-15FFCP PHASE2:Hg19::chr3:138665774..138665786,-#_a6f067a54c411c9ad6652ba37aec530cp5@FOXL2
2.38e-15FFCP PHASE2:Hg19::chr11:32457307..32457323,+#_9f9c94264d9849fc9267626c10cc3232p4@WT1-AS
2.38e-15FFCP PHASE1:Hg19::chr11:32457307..32457323,+#_9f9c94264d9849fc9267626c10cc3232p4@WT1-AS
9.36e-15FFCP PHASE1:Hg19::chr7:81146338..81146341,-#_a3ba4eaeabea4e2713ed6cd4efebbc75p@chr7:81146338..81146341, -
9.36e-15FFCP PHASE2:Hg19::chr7:81146338..81146341,-#_a3ba4eaeabea4e2713ed6cd4efebbc75p@chr7:81146338..81146341, -
1.41e-14FFCP PHASE2:Hg19::chr4:72204780..72204830,+#_b331ba2ea8d047e2bb85b15ee9bdc92fp2@SLC4A4
1.41e-14FFCP PHASE1:Hg19::chr4:72204780..72204830,+#_b331ba2ea8d047e2bb85b15ee9bdc92fp2@SLC4A4
2.11e-14FFCP PHASE1:Hg19::chr17:38252990..38252995,-#_80197aa8ef13424a3ca039669f61f760p12@NR1D1
2.11e-14FFCP PHASE1:Hg19::chr19:14544083..14544090,+#_80197aa8ef13424a3ca039669f61f760p6@PKN1
2.11e-14FFCP PHASE2:Hg19::chr19:14544083..14544090,+#_80197aa8ef13424a3ca039669f61f760p6@PKN1
2.11e-14FFCP PHASE2:Hg19::chr17:38252990..38252995,-#_80197aa8ef13424a3ca039669f61f760p12@NR1D1

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