UBERON:0001015: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|anatomical_img_id=FMA:30316 | |||
| | |||
|comment=AO notes: In FMA this is classified as a set of organs. ZFA musculature system has subtypes, so it is classified here. WBbt muscular system has subtypes so it goes here. Note that we use the MA term set of skeletal muscles here as it seems most appropriate (*not* MA:musculature). AAO is generally confused here. | |comment=AO notes: In FMA this is classified as a set of organs. ZFA musculature system has subtypes, so it is classified here. WBbt muscular system has subtypes so it goes here. Note that we use the MA term set of skeletal muscles here as it seems most appropriate (*not* MA:musculature). AAO is generally confused here. | ||
|created_by= | |created_by= | ||
| | |def="A subdivision of the muscular system." [UBERON:cjm, Wikipedia:Muscular_system] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001015 | |||
|is_a=UBERON:0000480 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=musculature | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000383 | |part_of=UBERON:0000383 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0001474 | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0001474 | ||
| | |subset=uberon_slim;;vertebrate_core | ||
| | |synonym="muscle group" EXACT [];;"muscle system" RELATED [];;"muscles" RELATED [];;"muscles set" EXACT [];;"musculature" EXACT [];;"musculature system" RELATED [];;"musculi" EXACT [FMA:32558, FMA:TA];;"set of muscles" EXACT [FMA:32558];;"set of organs" EXACT [];;"set of skeletal muscles" EXACT [MA:0000165] | ||
|union_of= | |||
|xref=AAO:0011066;;BTO:0000887;;EFO:0001949;;FMA:32558;;http://upload.wikimedia.org/wikipedia/commons/e/e5/Muscles_anterior_labeled.png;;MA:0000165;;ncithesaurus:Muscle;;OpenCyc:Mx4rvVjmr5wpEbGdrcN5Y29ycA;;TAO:0000548;;VSAO:0005038;;WBbt:0005737;;ZFA:0000548 | |||
}} | }} | ||
Latest revision as of 17:14, 12 September 2014
| Name: | musculature | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A subdivision of the muscular system." [UBERON:cjm, Wikipedia:Muscular_system] | ||
| Xrefs: |
| ||
| Synonyms: |
"muscle group" EXACT [] "muscle system" RELATED [] "muscles" RELATED [] "muscles set" EXACT [] "musculature" EXACT [] "musculature system" RELATED [] "musculi" EXACT [FMA:32558, FMA:TA] "set of muscles" EXACT [FMA:32558] "set of organs" EXACT [] "set of skeletal muscles" EXACT [MA:0000165] | ||
| Comments: | AO notes: In FMA this is classified as a set of organs. ZFA musculature system has subtypes, so it is classified here. WBbt muscular system has subtypes so it goes here. Note that we use the MA term set of skeletal muscles here as it seems most appropriate (*not* MA:musculature). AAO is generally confused here. | ||
| Subset: |
uberon_slim vertebrate_core |
Muscles_anterior_labeled.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000480(anatomical group) |
|---|---|
| part_of: | UBERON:0000383(musculature of body) |
Children
| is a: | UBERON:0007271 (appendage musculature),UBERON:0008229 (craniocervical region musculature),UBERON:0013700 (axial musculature),UBERON:0014792 (musculature of pelvic complex) |
|---|---|
| part of: | UBERON:0001630 (muscle organ),UBERON:0002385 (muscle tissue) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10023-101D5 (skeletal muscle, adult, pool1)
- 10024-101D6 (small intestine, adult, pool1)
- 10048-101G3 (smooth muscle, adult, pool1)
- 10066-101I3 (skeletal muscle, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10094-102C4
- 10269-104D8
- 10270-104D9
- 10271-104E1
- 10272-104E2 (eye - muscle inferior rectus, donor1)
... further results Mouse (Mus musculus)
- 10023-101D5 (skeletal muscle, adult, pool1)
- 10024-101D6 (small intestine, adult, pool1)
- 10048-101G3 (smooth muscle, adult, pool1)
- 10066-101I3 (skeletal muscle, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10094-102C4
- 10269-104D8
- 10270-104D9
- 10271-104E1
- 10272-104E2 (eye - muscle inferior rectus, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001015 (musculature), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.24e-58 | FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_82f28aa74ce76de002cac200d2b95ae0 | p@chrX:160838683..160838694, + |
| 5.24e-58 | FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_82f28aa74ce76de002cac200d2b95ae0 | p@chrX:160838683..160838694, + |
| 5.11e-50 | FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_deec90052b46a0ad046ae87f677609a8 | p@chr12:105433069..105433075, - |
| 5.11e-50 | FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_deec90052b46a0ad046ae87f677609a8 | p@chrX:65748600..65748616, + |
| 5.11e-50 | FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_deec90052b46a0ad046ae87f677609a8 | p@chrX:65748600..65748616, + |
| 5.11e-50 | FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_deec90052b46a0ad046ae87f677609a8 | p@chr12:105433069..105433075, - |
| 1.47e-48 | FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_7873a6f23c9afa94dc4fc9d363765594 | p@chrX:160838787..160838800, + |
| 1.47e-48 | FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_7873a6f23c9afa94dc4fc9d363765594 | p@chrX:160838787..160838800, + |
| 1.23e-45 | FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_57e509716edcd8afbcef681d55505ab8 | p@chr6:53359400..53359406, + |
| 1.23e-45 | FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_57e509716edcd8afbcef681d55505ab8 | p@chr6:53359400..53359406, + |
| 8.42e-44 | FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_510b485a02af47c6fe6596146f8bfe62 | p@chr11:81849982..81850000, + |
| 8.42e-44 | FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_510b485a02af47c6fe6596146f8bfe62 | p@chr11:81849982..81850000, + |
| 1.15e-40 | FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_fb09cc3df286d490c7da1ac8183d4963 | p@chr17:14813242..14813246, - |
| 1.15e-40 | FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_fb09cc3df286d490c7da1ac8183d4963 | p@chr17:14813242..14813246, - |
| 3.7e-39 | FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_85c405102d26b72cac20fe5774249ce0 | p4@Gpr39 |
| 3.7e-39 | FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_85c405102d26b72cac20fe5774249ce0 | p4@Gpr39 |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_81001fc217aba2b7f63e3d835da6e8ae | p@chrX:160823859..160823870, + |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_81001fc217aba2b7f63e3d835da6e8ae | p@chrX:160840025..160840037, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_81001fc217aba2b7f63e3d835da6e8ae | p@chrX:160823859..160823870, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_81001fc217aba2b7f63e3d835da6e8ae | p@chrX:160840025..160840037, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_81001fc217aba2b7f63e3d835da6e8ae | p@chrX:160840048..160840057, + |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_81001fc217aba2b7f63e3d835da6e8ae | p@chrX:160840048..160840057, + |
| 4.49e-37 | FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_9e01a4d855c523524d05845e1e56f9ac | p2@LRRC17 |
| 4.49e-37 | FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_9e01a4d855c523524d05845e1e56f9ac | p2@LRRC17 |
| 7.76e-37 | FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_72ff00cb23ef1218b3fc38643db63299 | p@chr9:35685631..35685657, + |
| 7.76e-37 | FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_72ff00cb23ef1218b3fc38643db63299 | p@chr9:35685631..35685657, + |
| 1.55e-35 | FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_bd1bd776e8eddf88c7cfb6c9e9fb0188 | p8@ARHGAP22 |
| 1.55e-35 | FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_bd1bd776e8eddf88c7cfb6c9e9fb0188 | p8@ARHGAP22 |
| 3.31e-35 | FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_99494dd506437ef63c64a168aea7d203 | p11@Fam198b |
| 3.31e-35 | FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_99494dd506437ef63c64a168aea7d203 | p11@Fam198b |
| 3.69e-35 | FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_a5309ac66c63dc2b1f3b505eb9d585ca | p@chr1:127574253..127574264, + |
| 3.69e-35 | FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_a5309ac66c63dc2b1f3b505eb9d585ca | p@chr1:127574253..127574264, + |
| 5.09e-35 | FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_5528c55d397be596e3c020dd55834ac8 | p7@Gpr39 |
| 5.09e-35 | FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_5528c55d397be596e3c020dd55834ac8 | p7@Gpr39 |
| 5.98e-35 | FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_e3fd604bfd8f2a4ffdc506394857e327 | p11@Gpr39 |
| 5.98e-35 | FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_e3fd604bfd8f2a4ffdc506394857e327 | p11@Gpr39 |
| 7.03e-35 | FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_c7b7d4daff588ab4ee7c31ab68c7b19e | p@chrX:160839768..160839780, + |
| 7.03e-35 | FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_c7b7d4daff588ab4ee7c31ab68c7b19e | p@chrX:160839768..160839780, + |
| 1.33e-34 | FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_79921733bdc04e1e637278f21e3236a1 | p8@Gpr39 |
| 1.33e-34 | FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_79921733bdc04e1e637278f21e3236a1 | p8@Gpr39 |
| 2.4e-34 | FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_e8e444a5c2726e2134e2aa97532b32c3 | p4@ARHGAP22 |
| 2.4e-34 | FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_e8e444a5c2726e2134e2aa97532b32c3 | p4@ARHGAP22 |
| 4.34e-34 | FFCP PHASE1:Hg19::chr7:102553430..102553456,+#_268bd044fadd742c901872871566f429 | p1@LRRC17 |
| 4.34e-34 | FFCP PHASE2:Hg19::chr7:102553430..102553456,+#_268bd044fadd742c901872871566f429 | p1@LRRC17 |
| 1.01e-33 | FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_e112d1905ab513319a1436c4a1b1ebb1 | p@chr11:102661517..102661541, - |
| 1.01e-33 | FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_e112d1905ab513319a1436c4a1b1ebb1 | p@chr11:102661517..102661541, - |
| 3.36e-33 | FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_adb1484e9d5f15a30643cf5ab56ecfb0 | p@chr4:74703497..74703511, + |
| 3.36e-33 | FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_adb1484e9d5f15a30643cf5ab56ecfb0 | p@chr4:74703497..74703511, + |
| 9.96e-33 | FFCP PHASE2:Hg19::chr9:35684475..35684520,+#_ef402240949b547113755d9724061b56 | p@chr9:35684475..35684520, + |
| 9.96e-33 | FFCP PHASE1:Hg19::chr9:35684475..35684520,+#_ef402240949b547113755d9724061b56 | p@chr9:35684475..35684520, + |
| 1.11e-32 | FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_8118d6305376d8098cb877d3692aff0e | p@chr4:7846444..7846449, - |
| 1.11e-32 | FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_8118d6305376d8098cb877d3692aff0e | p@chr4:7846444..7846449, - |
| 1.38e-32 | FFCP PHASE2:Hg19::chr9:35689148..35689192,+#_5bc942703e4f19d70d6e3dc99feef0e7 | p@chr9:35689148..35689192, + |
| 1.38e-32 | FFCP PHASE1:Hg19::chr9:35689148..35689192,+#_5bc942703e4f19d70d6e3dc99feef0e7 | p@chr9:35689148..35689192, + |
| 3.94e-32 | FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_e1aa61d8c7b014c34aeefcba1278558c | p@chr7:96658543..96658553, - |
| 3.94e-32 | FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_e1aa61d8c7b014c34aeefcba1278558c | p@chr7:96658543..96658553, - |
| 6.63e-32 | FFCP PHASE1:Hg19::chr7:102553382..102553397,+#_1000d8056ffd8100cecfebe26bb40c7e | p3@LRRC17 |
| 6.63e-32 | FFCP PHASE2:Hg19::chr7:102553382..102553397,+#_1000d8056ffd8100cecfebe26bb40c7e | p3@LRRC17 |
| 1.03e-31 | FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_979a2dee9d4c5bfc531a2f39985dab2f | p2@SASH1 |
| 1.03e-31 | FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_979a2dee9d4c5bfc531a2f39985dab2f | p2@SASH1 |
| 1.33e-31 | FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_6c1016146c00fd010f96414c84ea2ace | p@chr7:91081998..91082010, - |
| 1.33e-31 | FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_6c1016146c00fd010f96414c84ea2ace | p@chr7:91081998..91082010, - |
| 1.33e-31 | FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_6c1016146c00fd010f96414c84ea2ace | p2@Il6 |
| 1.33e-31 | FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_6c1016146c00fd010f96414c84ea2ace | p2@Il6 |
| 1.59e-31 | FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_68eb685b4acf60ee1eb689b12cd4c331 | p@chr10:67598037..67598049, - |
| 1.59e-31 | FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_68eb685b4acf60ee1eb689b12cd4c331 | p@chr10:67598037..67598049, - |
| 2.52e-31 | FFCP PHASE2:Hg19::chr9:35685445..35685517,+#_f78d47caabe7c0bddf48982117e1e6e1 | p@chr9:35685445..35685517, + |
| 2.52e-31 | FFCP PHASE1:Hg19::chr9:35685445..35685517,+#_f78d47caabe7c0bddf48982117e1e6e1 | p@chr9:35685445..35685517, + |
| 2.72e-31 | FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_8bc7c466ecc7c430638dc9262c1aba2e | p@chr2:65009852..65009866, - |
| 2.72e-31 | FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_8bc7c466ecc7c430638dc9262c1aba2e | p@chr2:65009852..65009866, - |
| 2.8e-31 | FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_fbf5619fab1f34e1866224b17096b3b2 | p@chr18:52678391..52678395, - |
| 2.8e-31 | FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_fbf5619fab1f34e1866224b17096b3b2 | p@chr18:52678391..52678395, - |
| 4.49e-31 | FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_541f85dacfafdc5448cb2eb4cb48a137 | p@chr2:134548872..134548879, - |
| 4.49e-31 | FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_541f85dacfafdc5448cb2eb4cb48a137 | p@chr2:134548872..134548879, - |
| 4.6e-31 | FFCP PHASE1:Hg19::chr4:74702338..74702349,+#_b9821d56482e894ab4dd4a8b5f1ddadc | p2@CXCL6 |
| 4.6e-31 | FFCP PHASE2:Hg19::chr4:74702338..74702349,+#_b9821d56482e894ab4dd4a8b5f1ddadc | p2@CXCL6 |
| 6.22e-31 | FFCP PHASE2:Hg19::chr4:169059590..169059615,+#_cbc6c66124189117403fec4d97dbe2ca | p@chr4:169059590..169059615, + |
| 6.22e-31 | FFCP PHASE1:Hg19::chr4:169059590..169059615,+#_cbc6c66124189117403fec4d97dbe2ca | p@chr4:169059590..169059615, + |
| 7.65e-31 | FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_85468f6482b4d7ecd1a32ec451d1d26e | p@chr6:91222095..91222107, + |
| 7.65e-31 | FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_85468f6482b4d7ecd1a32ec451d1d26e | p@chr6:91222095..91222107, + |
| 1.01e-30 | FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_b2c907b5cbd597b39caa14f1ae75ecd2 | p9@Kctd10 |
| 1.01e-30 | FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_b2c907b5cbd597b39caa14f1ae75ecd2 | p9@Kctd10 |
| 1.17e-30 | FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_ea444236aeed94fbf2941b27af5d7df0 | p6@Gpr39 |
| 1.17e-30 | FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_ea444236aeed94fbf2941b27af5d7df0 | p6@Gpr39 |
| 1.33e-30 | FFCP PHASE2:Hg19::chr14:96722539..96722555,+#_65dc1efd1d8c8054c0d04ddd7c2317bf | p1@BDKRB1 |
| 1.33e-30 | FFCP PHASE1:Hg19::chr14:96722539..96722555,+#_65dc1efd1d8c8054c0d04ddd7c2317bf | p1@BDKRB1 |
| 1.34e-30 | FFCP PHASE1:Hg19::chr14:94595800..94595811,-#_3d06acd9c0c4863aa17440b3d35f6216 | p3@IFI27L2 |
| 1.34e-30 | FFCP PHASE2:Hg19::chr14:94595800..94595811,-#_3d06acd9c0c4863aa17440b3d35f6216 | p3@IFI27L2 |
| 1.55e-30 | FFCP PHASE2:Hg19::chr7:93516035..93516056,+#_a7723f894e0349529cced113471444cb | p1@CU675118 |
| 1.55e-30 | FFCP PHASE1:Hg19::chr7:93516035..93516056,+#_a7723f894e0349529cced113471444cb | p1@CU675118 |
| 1.72e-30 | FFCP PHASE2:Hg19::chr1:79472477..79472510,-#_11e2431e252ebc245c4bff7ab4cab79d | p2@ELTD1 |
| 1.72e-30 | FFCP PHASE1:Hg19::chr1:79472477..79472510,-#_11e2431e252ebc245c4bff7ab4cab79d | p2@ELTD1 |
| 6.51e-30 | FFCP PHASE2:Hg19::chr4:74702666..74702694,+#_161da9c0bdb8ead8801f37c444541bac | p3@CXCL6 |
| 6.51e-30 | FFCP PHASE1:Hg19::chr4:74702666..74702694,+#_161da9c0bdb8ead8801f37c444541bac | p3@CXCL6 |
| 7.66e-30 | FFCP PHASE2:Hg19::chr9:35685273..35685313,+#_7ef278e455a0a8f7f05b5888a7f6efd3 | p@chr9:35685273..35685313, + |
| 7.66e-30 | FFCP PHASE1:Hg19::chr9:35685273..35685313,+#_7ef278e455a0a8f7f05b5888a7f6efd3 | p@chr9:35685273..35685313, + |
| 8.47e-30 | FFCP PHASE1:Mm9::chr7:34998469..34998489,-#_1ebb2c949af9232aee821ed420f82ac9 | p@chr7:34998469..34998489, - |
| 8.47e-30 | FFCP PHASE2:Mm9::chr7:34998469..34998489,-#_1ebb2c949af9232aee821ed420f82ac9 | p@chr7:34998469..34998489, - |
| 8.84e-30 | FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_3d550f3c1bee9e683ce6f171bf0849ed | p@chr2:178190171..178190178, + |
| 8.84e-30 | FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_3d550f3c1bee9e683ce6f171bf0849ed | p@chr17:87574327..87574332, + |
