UBERON:0004875: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=part_of or develops_from urogenital ridge? | |comment=part_of or develops_from urogenital ridge? | ||
|created_by= | |created_by= | ||
| | |def="a portion of the urogenital ridge which is the source of much of the urinary system[WP]." [Wikipedia:Nephrogenic_cord] | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0004876 | |develops_from=UBERON:0004876 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004875 | |||
|is_a=UBERON:0005423 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=nephrogenic cord | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000922 | |part_of=UBERON:0000922 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="chorda nephrogenica" RELATED LATIN [Wikipedia:Nephrogenic_cord] | ||
|union_of= | |||
|xref=FMA:72168;;ncithesaurus:Nephrogenic_Cord;;SCTID:361405003 | |||
}} | }} | ||
Latest revision as of 17:49, 12 September 2014
| Name: | nephrogenic cord | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "a portion of the urogenital ridge which is the source of much of the urinary system[WP]." [Wikipedia:Nephrogenic_cord] | ||
| Xrefs: |
| ||
| Synonyms: | "chorda nephrogenica" RELATED LATIN [Wikipedia:Nephrogenic_cord] | ||
| Comments: | part_of or develops_from urogenital ridge? |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005423(developing anatomical structure) |
|---|---|
| develops_from: | UBERON:0004876(urogenital ridge) |
| part_of: | UBERON:0000922(embryo) |
Children
| part of: | UBERON:0005754 (rostral part of nephrogenic cord) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004875 (nephrogenic cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_3e74b05bcd4ae70139df9224d331bf42 | p4@Defb42 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_3e74b05bcd4ae70139df9224d331bf42 | p@chr14:63585028..63585037, - |
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_3e74b05bcd4ae70139df9224d331bf42 | p@chr14:63585028..63585037, - |
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_3e74b05bcd4ae70139df9224d331bf42 | p4@Defb42 |
| 2.83e-65 | FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_3e74b05bcd4ae70139df9224d331bf42 | p@chr10:127470655..127470664, + |
| 2.83e-65 | FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_3e74b05bcd4ae70139df9224d331bf42 | p@chr10:127470655..127470664, + |
| 2.83e-65 | FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_3e74b05bcd4ae70139df9224d331bf42 | p4@Spink12 |
| 2.83e-65 | FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_3e74b05bcd4ae70139df9224d331bf42 | p4@Spink12 |
| 3.99e-50 | FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_c356b2c847a515521a6fe753444b3a76 | p@chr2:152388713..152388729, + |
| 3.99e-50 | FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_c356b2c847a515521a6fe753444b3a76 | p@chr2:152388713..152388729, + |
| 5.6e-50 | FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_a52ba957e8ad4186f4d8110f79d26ad7 | p@chr2:120409486..120409492, + |
| 5.6e-50 | FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_a52ba957e8ad4186f4d8110f79d26ad7 | p@chr2:120409486..120409492, + |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_386211f7cdcce24144f83dd84ef487d5 | p@chr11:76361451..76361499, + |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_386211f7cdcce24144f83dd84ef487d5 | p@chr14:63585020..63585025, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_386211f7cdcce24144f83dd84ef487d5 | p@chr14:63585048..63585062, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_386211f7cdcce24144f83dd84ef487d5 | p@chr11:76361451..76361499, + |
| 1.6e-49 | FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_386211f7cdcce24144f83dd84ef487d5 | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_386211f7cdcce24144f83dd84ef487d5 | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_386211f7cdcce24144f83dd84ef487d5 | p@chr14:63585048..63585062, - |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_386211f7cdcce24144f83dd84ef487d5 | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_386211f7cdcce24144f83dd84ef487d5 | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_386211f7cdcce24144f83dd84ef487d5 | p@chr14:63585020..63585025, - |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr14:63627556..63627564, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr14:63627556..63627564, - |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr9:26732045..26732085, + |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_d9799cdb5d1792b54fa1fa8cc7d7483a | p2@Eddm3b |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr9:26732045..26732085, + |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_d9799cdb5d1792b54fa1fa8cc7d7483a | p2@Eddm3b |
| 3.4e-49 | FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_7e60dff3c96e89262e358066b0d5d3ca | p@chr2:69981027..69981032, + |
| 3.4e-49 | FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_7e60dff3c96e89262e358066b0d5d3ca | p@chr2:69981027..69981032, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr1:172416185..172416189,-#_121e7bbcf9d5f9174346c0dd1cd0f66e | p@chr1:172416185..172416189, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_121e7bbcf9d5f9174346c0dd1cd0f66e | p10@PAX2 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_121e7bbcf9d5f9174346c0dd1cd0f66e | p@chr1:172416185..172416189, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr14:68644730..68644737,+#_121e7bbcf9d5f9174346c0dd1cd0f66e | p@chr14:68644730..68644737, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_121e7bbcf9d5f9174346c0dd1cd0f66e | p@chr14:68644730..68644737, + |
| 9.75e-45 | FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_121e7bbcf9d5f9174346c0dd1cd0f66e | p10@PAX2 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:148676859..148676866,-#_2c808356ccd804cd36d69a04f78b05be | p5@9230104L09Rik |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:89597660..89597668,+#_2c808356ccd804cd36d69a04f78b05be | p@chr1:89597660..89597668, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr15:83143938..83143953,-#_2c808356ccd804cd36d69a04f78b05be | p@chr15:83143938..83143953, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:63611303..63611312,+#_2c808356ccd804cd36d69a04f78b05be | p@chr14:63611303..63611312, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:158083961..158083968,+#_2c808356ccd804cd36d69a04f78b05be | p4@Bpi |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:36016859..36016897,+#_2c808356ccd804cd36d69a04f78b05be | p@chr1:36016859..36016897, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:101958855..101958871,-#_2c808356ccd804cd36d69a04f78b05be | p@chr11:101958855..101958871, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:100350777..100350782,+#_2c808356ccd804cd36d69a04f78b05be | p@chr9:100350777..100350782, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:12571771..12571780,-#_2c808356ccd804cd36d69a04f78b05be | p@chrX:12571771..12571780, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:160573108..160573123,+#_2c808356ccd804cd36d69a04f78b05be | p@chr2:160573108..160573123, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:23045782..23045791,+#_2c808356ccd804cd36d69a04f78b05be | p@chr8:23045782..23045791, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:34107586..34107593,-#_2c808356ccd804cd36d69a04f78b05be | p@chr11:34107586..34107593, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21379159..21379162,-#_2c808356ccd804cd36d69a04f78b05be | p@chr13:21379159..21379162, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:31379845..31379855,+#_2c808356ccd804cd36d69a04f78b05be | p@chr5:31379845..31379855, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr16:92995710..92995753,+#_2c808356ccd804cd36d69a04f78b05be | p@chr16:92995710..92995753, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr15:75304916..75304925,+#_2c808356ccd804cd36d69a04f78b05be | p@chr15:75304916..75304925, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:116901482..116901494,-#_2c808356ccd804cd36d69a04f78b05be | p2@ENSMUST00000152401 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:42151966..42151976,-#_2c808356ccd804cd36d69a04f78b05be | p9@Tecta |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21381777..21381789,-#_2c808356ccd804cd36d69a04f78b05be | p@chr13:21381777..21381789, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr7:65995799..65995810,-#_2c808356ccd804cd36d69a04f78b05be | p@chr7:65995799..65995810, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:26599476..26599505,-#_2c808356ccd804cd36d69a04f78b05be | p3@Glb1l2 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:164480465..164480471,-#_2c808356ccd804cd36d69a04f78b05be | p2@Wfdc9 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr3:103650730..103650741,+#_2c808356ccd804cd36d69a04f78b05be | p@chr3:103650730..103650741, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:164499572..164499580,-#_2c808356ccd804cd36d69a04f78b05be | p2@Wfdc11 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:26727675..26727681,-#_2c808356ccd804cd36d69a04f78b05be | p@chr9:26727675..26727681, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr19:24582739..24582748,-#_2c808356ccd804cd36d69a04f78b05be | p@chr19:24582739..24582748, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:51627616..51627623,+#_2c808356ccd804cd36d69a04f78b05be | p2@Rnase10 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr10:127470322..127470326,+#_2c808356ccd804cd36d69a04f78b05be | p@chr10:127470322..127470326, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:22061721..22061728,-#_2c808356ccd804cd36d69a04f78b05be | p2@Gm6040, p2@LOC100503992 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:90156002..90156013,+#_2c808356ccd804cd36d69a04f78b05be | p@chr1:90156002..90156013, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr7:148445639..148445665,+#_2c808356ccd804cd36d69a04f78b05be | p@chr7:148445639..148445665, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:25349488..25349492,-#_2c808356ccd804cd36d69a04f78b05be | p6@Lcn12 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr15:54678915..54678922,-#_2c808356ccd804cd36d69a04f78b05be | p@chr15:54678915..54678922, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:53955299..53955306,+#_2c808356ccd804cd36d69a04f78b05be | p@chr11:53955299..53955306, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:34813361..34813403,-#_2c808356ccd804cd36d69a04f78b05be | p@chr9:34813361..34813403, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr4:106731469..106731481,-#_2c808356ccd804cd36d69a04f78b05be | p@chr4:106731469..106731481, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:31379878..31379883,+#_2c808356ccd804cd36d69a04f78b05be | p@chr5:31379878..31379883, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21378927..21378932,-#_2c808356ccd804cd36d69a04f78b05be | p@chr13:21378927..21378932, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21383212..21383225,-#_2c808356ccd804cd36d69a04f78b05be | p@chr13:21383212..21383225, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:20817297..20817313,+#_2c808356ccd804cd36d69a04f78b05be | p@chr11:20817297..20817313, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:126604677..126604701,-#_2c808356ccd804cd36d69a04f78b05be | p@chr8:126604677..126604701, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:20419453..20419476,+#_2c808356ccd804cd36d69a04f78b05be | p@chrX:20419453..20419476, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr4:123977104..123977120,-#_2c808356ccd804cd36d69a04f78b05be | p1@ENSMUST00000139012, p1@uc008uqo.1 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:155722142..155722175,-#_2c808356ccd804cd36d69a04f78b05be | p@chr1:155722142..155722175, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:50280181..50280192,+#_2c808356ccd804cd36d69a04f78b05be | p@chrX:50280181..50280192, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:11079838..11079844,+#_2c808356ccd804cd36d69a04f78b05be | p@chr1:11079838..11079844, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr12:114385720..114385732,-#_2c808356ccd804cd36d69a04f78b05be | p@chr12:114385720..114385732, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:19141471..19141518,-#_2c808356ccd804cd36d69a04f78b05be | p@chr8:19141471..19141518, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:24270118..24270122,-#_2c808356ccd804cd36d69a04f78b05be | p@chr13:24270118..24270122, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21378871..21378901,-#_2c808356ccd804cd36d69a04f78b05be | p@chr13:21378871..21378901, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:152388977..152388983,+#_2c808356ccd804cd36d69a04f78b05be | p@chr2:152388977..152388983, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:192816674..192816714,+#_2c808356ccd804cd36d69a04f78b05be | p@chr1:192816674..192816714, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr16:43230846..43230884,+#_2c808356ccd804cd36d69a04f78b05be | p@chr16:43230846..43230884, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:19141371..19141383,+#_2c808356ccd804cd36d69a04f78b05be | p@chr8:19141371..19141383, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:167688595..167688624,+#_2c808356ccd804cd36d69a04f78b05be | p@chr2:167688595..167688624, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr18:44261480..44261486,+#_2c808356ccd804cd36d69a04f78b05be | p@chr18:44261480..44261486, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:52542661..52542668,-#_2c808356ccd804cd36d69a04f78b05be | p3@Rnase13 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21379372..21379404,+#_2c808356ccd804cd36d69a04f78b05be | p@chr13:21379372..21379404, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:25706074..25706082,-#_2c808356ccd804cd36d69a04f78b05be | p3@Ido1 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:164434346..164434353,-#_2c808356ccd804cd36d69a04f78b05be | p@chr2:164434346..164434353, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:90155707..90155720,+#_2c808356ccd804cd36d69a04f78b05be | p@chr1:90155707..90155720, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr10:127470322..127470326,+#_2c808356ccd804cd36d69a04f78b05be | p@chr10:127470322..127470326, + |
