FF:10001-101A3: Difference between revisions

Latest revision as of 13:43, 24 September 2021

Name:	Clontech Mouse Universal Reference Total RNA, pool1
Species:	Mouse (Mus musculus)
Library ID:	CNhs10609
Sample type:	tissues
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	whole body
dev stage	UNDEFINED
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	8092682
catalog number	Cat:636657
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005443

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10609		CAGE		DRX008920		DRR009794

Accession ID Mm9

Library id		BAM		CTSS
CNhs10609		DRZ001219		DRZ002602

Accession ID Mm10

Library id		BAM		CTSS
CNhs10609		DRZ012569		DRZ013952

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs10609

0	0.715
1	0.323
10	0
100	0
1000	0.0652
1001	0.0244
1002	-0.0343
1003	-0.00177
1004	0.236
1005	0.0354
1006	0.259
1007	0.0894
1008	0
1009	0.168
101	-0.0613
1010	0.0354
1011	0.692
1012	0.0682
1013	0.0807
1014	-0.0851
1015	0.122
1016	-0.0769
1017	0
1018	0.0682
1019	0.0354
102	0
1020	0
1021	0
1022	0.217
1023	0
1024	0.233
1025	0.373
1026	0.581
1027	0.131
1028	0.0354
1029	-0.0307
103	0.00251
1030	0
1031	-0.0963
1032	0.053
1033	0.0322
1034	0.125
1035	0.247
1036	-0.238
1037	0
1038	0.0329
1039	0.179
104	0
1040	0.082
1041	0.225

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10609

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.26
MA0003.1	MA0003.1	0.159
MA0004.1	MA0004.1	0.81
MA0006.1	MA0006.1	0.0516
MA0007.1	MA0007.1	0.746
MA0009.1	MA0009.1	0.309
MA0014.1	MA0014.1	0.913
MA0017.1	MA0017.1	0.592
MA0018.2	MA0018.2	2.88425e-14
MA0019.1	MA0019.1	0.0969
MA0024.1	MA0024.1	0.346
MA0025.1	MA0025.1	0.00866
MA0027.1	MA0027.1	0.0693
MA0028.1	MA0028.1	0.0117
MA0029.1	MA0029.1	0.672
MA0030.1	MA0030.1	0.374
MA0031.1	MA0031.1	0.913
MA0035.2	MA0035.2	0.00266
MA0038.1	MA0038.1	0.375
MA0039.2	MA0039.2	0.468
MA0040.1	MA0040.1	0.279
MA0041.1	MA0041.1	0.0618
MA0042.1	MA0042.1	0.353
MA0043.1	MA0043.1	0.00211
MA0046.1	MA0046.1	0.00346
MA0047.2	MA0047.2	0.265
MA0048.1	MA0048.1	0.835
MA0050.1	MA0050.1	0.0197
MA0051.1	MA0051.1	0.967
MA0052.1	MA0052.1	0.0616
MA0055.1	MA0055.1	0.0454
MA0057.1	MA0057.1	0.364
MA0058.1	MA0058.1	0.897
MA0059.1	MA0059.1	0.478
MA0060.1	MA0060.1	6.26947e-5
MA0061.1	MA0061.1	2.34811e-4
MA0062.2	MA0062.2	1.0206e-5
MA0065.2	MA0065.2	0.523
MA0066.1	MA0066.1	0.411
MA0067.1	MA0067.1	0.411
MA0068.1	MA0068.1	0.222
MA0069.1	MA0069.1	0.197
MA0070.1	MA0070.1	0.97
MA0071.1	MA0071.1	0.755
MA0072.1	MA0072.1	0.27
MA0073.1	MA0073.1	0.942
MA0074.1	MA0074.1	0.547
MA0076.1	MA0076.1	0.0668
MA0077.1	MA0077.1	5.72116e-5
MA0078.1	MA0078.1	8.26167e-10
MA0079.2	MA0079.2	0.686
MA0080.2	MA0080.2	1.44718e-5
MA0081.1	MA0081.1	0.00323
MA0083.1	MA0083.1	0.387
MA0084.1	MA0084.1	0.554
MA0087.1	MA0087.1	0.0301
MA0088.1	MA0088.1	0.402
MA0090.1	MA0090.1	0.143
MA0091.1	MA0091.1	0.994
MA0092.1	MA0092.1	0.0993
MA0093.1	MA0093.1	0.941
MA0099.2	MA0099.2	0.134
MA0100.1	MA0100.1	2.94888e-22
MA0101.1	MA0101.1	0.00555
MA0102.2	MA0102.2	0.495
MA0103.1	MA0103.1	0.166
MA0104.2	MA0104.2	4.70328e-4
MA0105.1	MA0105.1	2.07987e-7
MA0106.1	MA0106.1	1.70295e-4
MA0107.1	MA0107.1	0.00145
MA0108.2	MA0108.2	0.821
MA0111.1	MA0111.1	0.0386
MA0112.2	MA0112.2	0.0726
MA0113.1	MA0113.1	0.611
MA0114.1	MA0114.1	0.301
MA0115.1	MA0115.1	0.917
MA0116.1	MA0116.1	0.0201
MA0117.1	MA0117.1	0.95
MA0119.1	MA0119.1	0.341
MA0122.1	MA0122.1	0.666
MA0124.1	MA0124.1	0.619
MA0125.1	MA0125.1	0.453
MA0131.1	MA0131.1	0.492
MA0135.1	MA0135.1	0.793
MA0136.1	MA0136.1	2.5896e-5
MA0137.2	MA0137.2	0.101
MA0138.2	MA0138.2	0.37
MA0139.1	MA0139.1	0.432
MA0140.1	MA0140.1	3.39424e-7
MA0141.1	MA0141.1	0.335
MA0142.1	MA0142.1	0.498
MA0143.1	MA0143.1	3.38138e-4
MA0144.1	MA0144.1	0.227
MA0145.1	MA0145.1	0.18
MA0146.1	MA0146.1	0.0203
MA0147.1	MA0147.1	0.00513
MA0148.1	MA0148.1	0.133
MA0149.1	MA0149.1	0.491
MA0150.1	MA0150.1	0.659
MA0152.1	MA0152.1	0.0808
MA0153.1	MA0153.1	0.151
MA0154.1	MA0154.1	0.0539
MA0155.1	MA0155.1	0.244
MA0156.1	MA0156.1	1.22068e-6
MA0157.1	MA0157.1	0.381
MA0159.1	MA0159.1	0.543
MA0160.1	MA0160.1	0.0011
MA0162.1	MA0162.1	0.582
MA0163.1	MA0163.1	0.363
MA0164.1	MA0164.1	0.726
MA0258.1	MA0258.1	0.499
MA0259.1	MA0259.1	0.16

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10609

Novel motif	Logo	P-value
1	1	0.915
10	10	0.389
100	100	0.308
101	101	0.3
102	102	0.353
103	103	0.547
104	104	0.899
105	105	0.929
106	106	0.00252
107	107	0.0468
108	108	0.449
109	109	0.947
11	11	0.656
110	110	0.689
111	111	0.862
112	112	0.497
113	113	0.856
114	114	0.395
115	115	0.904
116	116	0.917
117	117	0.514
118	118	0.551
119	119	0.667
12	12	0.867
120	120	0.657
121	121	0.0271
122	122	0.615
123	123	0.371
124	124	0.855
125	125	0.735
126	126	0.924
127	127	0.202
128	128	0.0167
129	129	0.444
13	13	0.00371
130	130	0.934
131	131	0.824
132	132	0.683
133	133	0.423
134	134	0.969
135	135	0.1
136	136	0.00394
137	137	0.385
138	138	0.989
139	139	0.333
14	14	0.649
140	140	0.064
141	141	0.142
142	142	0.727
143	143	0.529
144	144	0.27
145	145	0.834
146	146	0.199
147	147	0.368
148	148	0.298
149	149	0.389
15	15	0.671
150	150	0.803
151	151	0.372
152	152	0.521
153	153	0.806
154	154	0.315
155	155	0.462
156	156	1.84924e-5
157	157	0.987
158	158	1.38689e-5
159	159	0.0548
160	160	0.0135
161	161	0.23
162	162	0.48
163	163	0.733
164	164	0.49
165	165	0.477
166	166	0.471
167	167	0.639
168	168	0.791
169	169	0.543
17	17	0.49
18	18	0.473
19	19	0.426
2	2	0.074
20	20	0.275
21	21	0.531
22	22	0.949
23	23	0.499
24	24	0.0694
25	25	0.438
26	26	0.0485
27	27	0.0435
28	28	0.459
29	29	0.848
3	3	0.322
30	30	0.825
31	31	0.414
32	32	0.737
33	33	0.618
34	34	0.225
35	35	0.665
36	36	0.335
37	37	0.0688
38	38	0.73
39	39	0.497
4	4	0.992
40	40	0.0822
41	41	5.29361e-4
42	42	0.497
43	43	0.29
44	44	0.767
45	45	0.734
46	46	0.312
47	47	0.0627
48	48	0.245
49	49	0.815
5	5	0.347
50	50	0.578
51	51	0.656
52	52	0.662
53	53	0.983
54	54	0.489
55	55	0.807
56	56	0.157
57	57	0.48
58	58	0.402
59	59	0.5
6	6	0.756
60	60	0.347
61	61	0.345
62	62	0.6
63	63	0.578
64	64	0.691
65	65	0.527
66	66	0.152
67	67	0.257
68	68	0.785
69	69	0.425
7	7	0.442
70	70	0.814
71	71	0.00348
72	72	0.329
73	73	0.243
74	74	0.786
75	75	0.17
76	76	0.4
77	77	0.748
78	78	2.14088e-6
79	79	0.963
8	8	0.016
80	80	0.533
81	81	0.301
82	82	0.916
83	83	0.658
84	84	0.682
85	85	0.891
86	86	0.287
87	87	0.00114
88	88	0.282
89	89	0.874
9	9	0.971
90	90	0.629
91	91	0.52
92	92	0.518
93	93	0.683
94	94	0.418
95	95	0.9
96	96	0.774
97	97	0.154
98	98	0.956
99	99	0.912

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10609

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000004 tissue sample
FF:0000103 mouse sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005443
+|accession_numbers=CAGE;DRX008920;DRR009794;DRZ001219;DRZ002602;DRZ012569;DRZ013952
 |ancestors_in_anatomy_facet=UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000004
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr13:93346120..93346155,-!p1@Spz1!2.65!445.46!Spz1;;chr1:168168856..168168893,-!p1@Mael!2.62!413.57!Mael;;chr4:107356135..107356179,-!p1@Dmrtb1!2.58!379.89!Dmrtb1;;chr5:38611867..38611888,+!p2@Lyar!2.43!269.93!Lyar;;chr6:131338278..131338362,-!p2@Csda!2.35!631.28!Csda;;chr11:69749396..69749433,+!p1@Ybx2!2.35!222.64!Ybx2;;chr3:90046414..90046476,-!p1@Creb3l4!2.20!159.12!Creb3l4;;chr10:22451680..22451722,-!p3@Tbpl1!1.90!77.81!Tbpl1;;chr10:70701022..70701036,-!p3@Tfam!1.88!75.52!Tfam;;chr18:52775562..52775650,+!p1@Zfp474!1.82!65.23!Zfp474;;chr4:107356181..107356197,-!p2@Dmrtb1!1.80!62.59!Dmrtb1;;chr1:52043967..52043976,+!p5@Stat4!1.76!56.89!Stat4;;chr6:143895612..143895631,-!p3@Sox5!1.76!56.38!Sox5;;chr1:52065054..52065098,+!p4@Stat4!1.74!53.92!Stat4;;chr16:50331100..50331130,-!p3@Bbx!1.72!51.11!Bbx;;chr4:149610794..149610876,+!p2@LOC100045967,p2@LOC100503183,p3@Eno1,p3@Gm5506!1.69!64.80!Eno1;;chr12:100009228..100009251,+!p2@Zc3h14!1.69!48.05!Zc3h14;;chr18:3309876..3309914,-!p9@Crem!1.64!42.35!Crem;;chr18:50438025..50438057,+!p1@Fam170a!1.62!40.48!Fam170a;;chr2:180377386..180377462,-!p1@Tcfl5!1.61!47.37!Tcfl5;;chr10:22451724..22451752,-!p4@Tbpl1!1.61!39.55!Tbpl1;;chr5:138202908..138202942,+!p10@Tsc22d4!1.60!38.78!Tsc22d4;;chr16:50331135..50331178,-!p5@Bbx!1.57!36.14!Bbx;;chr1:168168817..168168850,-!p2@Mael!1.57!36.06!Mael;;chr18:3299535..3299565,-!p10@Crem!1.57!35.89!Crem;;chr10:84224957..84224991,+!p3@Rfx4!1.56!35.46!Rfx4;;chr2:17985983..17986035,+!p4@Mllt10!1.54!33.68!Mllt10;;chr5:38611831..38611842,+!p3@Lyar!1.54!33.42!Lyar;;chr6:143895581..143895604,-!p6@Sox5!1.53!33.17!Sox5;;chr6:52663997..52664043,+!p2@Tax1bp1!1.53!33.00!Tax1bp1;;chr1:52043983..52043995,+!p6@Stat4!1.51!31.64!Stat4;;chr15:36937522..36937543,-!p4@Gm10193,p4@Zfp706!1.50!30.96!Zfp706;;chr11:69749437..69749467,+!p3@Ybx2!1.50!30.87!Ybx2;;chr11:69749367..69749385,+!p4@Ybx2!1.50!30.79!Ybx2;;chr1:56694305..56694324,-!p1@Hsfy2!1.48!29.51!Hsfy2;;chr6:131338363..131338383,-!p4@Csda!1.45!117.53!Csda;;chrX:113562567..113562578,+!p1@Cpxcr1!1.44!26.70!Cpxcr1;;chr10:70698065..70698087,-!p4@Tfam!1.44!26.53!Tfam;;chr16:91270004..91270023,+!p1@Olig1!1.42!28.74!Olig1;;chr5:77543897..77543911,-!p2@Hopx!1.40!45.16!Hopx;;chr1:137155026..137155042,-!p1@Elf3!1.35!120.68!Elf3;;chr2:79296783..79296801,-!p1@Neurod1!1.35!21.43!Neurod1;;chr18:3299485..3299513,-!p12@Crem!1.35!21.35!Crem;;chr7:29552143..29552173,-!p4@Nfkbib!1.33!20.24!Nfkbib;;chr7:25655099..25655143,+!p1@Dmrtc2!1.32!19.99!Dmrtc2;;chr12:100009260..100009274,+!p3@Zc3h14!1.32!19.82!Zc3h14;;chr7:135020660..135020688,+!p3@Zfp646!1.31!26.70!Zfp646;;chr7:31383850..31383874,-!p1@Zbtb32!1.31!19.56!Zbtb32;;chr1:56694274..56694293,-!p2@Hsfy2!1.31!19.56!Hsfy2;;chr7:19953851..19953902,+!p4@Ppp1r13l!1.31!19.30!Ppp1r13l;;chr14:55489750..55489784,-!p2@Homez!1.30!19.13!Homez;;chr2:180377307..180377330,-!p2@Tcfl5!1.30!18.79!Tcfl5;;chr9:18282807..18282821,+!p1@Mbd3l1!1.28!18.11!Mbd3l1;;chr14:32979060..32979091,+!p4@Gm6768,p4@Ncoa4!1.28!17.94!Ncoa4;;chr10:88969376..88969395,-!p1@Nr1h4!1.27!17.60!Nr1h4;;chr4:118967319..118967330,-!p6@Ybx1!1.25!16.67!Ybx1;;chr10:5636354..5636373,-!p2@Esr1!1.24!16.33!Esr1;;chr6:52664044..52664072,+!p5@Tax1bp1!1.23!16.07!Tax1bp1;;chr11:87430678..87430702,+!p1@Hsf5!1.22!15.65!Hsf5;;chr14:32979026..32979042,+!p5@Gm6768,p5@Ncoa4!1.22!15.56!Ncoa4;;chr10:5636374..5636421,-!p1@Esr1!1.21!19.05!Esr1;;chr8:26950937..26950991,-!p3@Ash2l!1.21!17.94!Ash2l;;chr5:38611816..38611827,+!p4@Lyar!1.21!16.92!Lyar;;chr10:22539932..22539956,-!p1@Tcf21!1.20!39.55!Tcf21;;chr11:83664365..83664383,+!p1@Hnf1b!1.20!14.88!Hnf1b;;chr6:52859625..52859638,-!p3@Jazf1!1.20!14.71!Jazf1;;chr6:6832076..6832092,-!p1@Dlx5!1.19!16.75!Dlx5;;chr7:86937900..86937933,-!p@chr7:86937900..86937933,-!1.19!14.37!Mesp1;;chr5:138199361..138199441,+!p2@Tsc22d4!1.18!26.79!Tsc22d4;;chr2:24331085..24331100,-!p1@Pax8!1.18!14.29!Pax8;;chr11:116196698..116196713,-!p3@Foxj1!1.18!14.03!Foxj1;;chr3:90046478..90046489,-!p5@Creb3l4!1.17!13.69!Creb3l4;;chr10:67375368..67375433,-!p1@Zfp365!1.16!23.98!Zfp365;;chr11:52096066..52096081,-!p2@Tcf7!1.16!16.33!Tcf7;;chr6:52859575..52859603,-!p4@Jazf1!1.15!13.10!Jazf1;;chr17:56970481..56970551,-!p2@Rfx2!1.14!39.46!Rfx2;;chr3:95032515..95032553,-!p5@Mllt11!1.14!15.39!Mllt11;;chr9:18282826..18282845,+!p2@Mbd3l1!1.14!12.84!Mbd3l1;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.13!15.73!Pou3f3;;chr11:116196714..116196729,-!p2@Foxj1!1.13!12.59!Foxj1;;chr11:87430653..87430666,+!p2@Hsf5!1.13!12.50!Hsf5;;chr8:123608252..123608268,+!p1@Foxf1a!1.12!18.20!Foxf1a;;chr4:61869708..61869732,-!p5@Zfp37!1.12!12.33!Zfp37;;chr8:26958093..26958148,-!p2@Ash2l!1.12!12.25!Ash2l;;chr11:69749491..69749502,+!p6@Ybx2!1.12!12.25!Ybx2;;chr17:15637108..15637147,+!p3@Tbp!1.12!12.08!Tbp;;chr17:87153240..87153254,+!p1@Epas1!1.11!231.66!Epas1;;chr6:55631042..55631102,-!p1@Neurod6!1.11!11.74!Neurod6;;chr5:134782473..134782486,-!p12@Gtf2i!1.11!11.74!Gtf2i;;chr10:22451660..22451678,-!p7@Tbpl1!1.10!11.65!Tbpl1;;chr1:39777834..39777860,-!p1@Rfx8!1.10!11.57!Rfx8;;chr4:117438155..117438175,-!p1@Klf17,p1@LOC100504967!1.10!11.48!Klf17;;chr7:31383882..31383903,-!p2@Zbtb32!1.09!11.40!Zbtb32;;chrX:83437105..83437121,+!p1@Nr0b1!1.09!11.31!Nr0b1;;chr11:87430728..87430749,+!p3@Hsf5!1.09!11.31!Hsf5;;chr15:100058744..100058772,+!p4@Gm1862,p6@Atf1!1.09!11.23!Atf1;;chr11:95170996..95171026,-!p3@Myst2!1.08!11.14!Myst2;;chr2:160685337..160685366,-!p5@Zhx3!1.07!10.72!Zhx3;;chr11:116196664..116196679,-!p1@Foxj1!1.06!16.24!Foxj1;;chr11:59319921..59319944,-!p5@Zkscan17!1.06!10.55!Zkscan17;;chr9:91260594..91260612,-!p1@Zic1!1.06!10.55!Zic1;;chr4:102815657..102815676,+!p16@Mier1!1.06!10.55!Mier1;;chr11:45793811..45793839,+!p1@Sox30!1.06!10.38!Sox30;;chr10:102491694..102491714,-!p3@Alx1!1.05!10.21!Alx1;;chr4:61869757..61869771,-!p6@Zfp37!1.05!10.21!Zfp37;;chr10:22451765..22451795,-!p6@Tbpl1!1.04!15.05!Tbpl1;;chr19:59533221..59533271,+!p1@Emx2!1.04!12.33!Emx2;;chr6:85463580..85463585,-!p1@Egr4!1.04!9.95!Egr4;;chr17:51971960..51971979,-!p1@Satb1!1.03!13.01!Satb1;;chrX:113562548..113562557,+!p2@Cpxcr1!1.03!9.78!Cpxcr1;;chr9:91260616..91260653,-!p2@Zic1!1.03!9.69!Zic1;;chr2:163372884..163372904,+!p1@Hnf4a!1.03!9.69!Hnf4a;;chr4:63042249..63042287,-!p10@Akna!1.03!9.61!Akna;;chr9:111020746..111020768,+!p5@Lrrfip2!1.03!9.61!Lrrfip2;;chr11:69749320..69749345,+!p2@Ybx2!1.02!15.73!Ybx2;;chr15:100410635..100410667,-!p4@Pou6f1!1.02!9.44!Pou6f1;;chr14:32979005..32979017,+!p7@Gm6768,p7@Ncoa4!1.02!9.35!Ncoa4;;chr7:88007115..88007129,+!p2@Zscan2!1.01!9.18!Zscan2;;chr1:52065106..52065124,+!p7@Stat4!1.01!9.18!Stat4;;chr2:27565816..27565828,+!p10@Rxra!1.00!9.10!Rxra;;chr6:52859553..52859568,-!p6@Jazf1!1.00!9.01!Jazf1;;chr8:72356384..72356434,+!p2@Pbx4!0.99!13.61!Pbx4;;chr13:96094769..96094829,+!p4@Zbed3!0.99!12.59!Zbed3;;chr11:96143666..96143725,+!p1@Hoxb8!0.99!10.04!Hoxb8;;chr4:61869681..61869704,-!p3@Zfp37!0.99!8.84!Zfp37;;chr11:34108085..34108092,-!p1@Foxi1!0.99!8.76!Foxi1;;chr11:85699862..85699920,+!p1@Tbx4!0.99!8.67!Tbx4;;chr1:56694252..56694259,-!p3@Hsfy2!0.98!8.59!Hsfy2;;chr2:180377331..180377344,-!p3@Tcfl5!0.98!8.59!Tcfl5;;chr8:72356532..72356611,+!p1@Pbx4!0.97!35.38!Pbx4;;chr14:69789996..69790021,+!p1@Nkx2-6!0.97!8.33!Nkx2-6;;chr9:8900459..8900489,+!p1@Pgr!0.97!8.25!Pgr;;chr1:120524520..120524528,+!p1@Tfcp2l1!0.96!24.24!Tfcp2l1;;chr5:136778385..136778407,-!p7@Cux1!0.96!8.08!Cux1;;chr11:98636531..98636559,-!p1@Nr1d1!0.95!46.26!Nr1d1;;chr10:84300848..84300879,+!p6@Rfx4!0.95!7.99!Rfx4;;chr12:86438030..86438041,-!p@chr12:86438030..86438041,-!0.95!7.91!Prox2;;chr19:19185671..19185693,-!p1@Rorb!0.94!18.96!Rorb;;chr16:3872378..3872411,-!p6@Zfp597!0.94!8.93!Zfp597;;chr12:81214217..81214219,-!p2@Zfp36l1!0.94!7.74!Zfp36l1;;chr10:84300905..84300919,+!p7@Rfx4!0.94!7.65!Rfx4;;chr4:61869733..61869751,-!p8@Zfp37!0.94!7.65!Zfp37;;chr2:74543397..74543435,+!p2@Hoxd8!0.94!7.65!Hoxd8;;chr2:38781916..38781974,-!p1@Nr6a1!0.93!23.56!Nr6a1;;chr16:55966407..55966447,+!p6@Rpl24,p6@Zbtb11!0.93!18.88!Zbtb11;;chr2:144157107..144157128,-!p3@Ovol2!0.93!7.57!Ovol2;;chr11:87430713..87430724,+!p4@Hsf5!0.93!7.57!Hsf5;;chr18:3309750..3309787,-!p21@Crem!0.93!7.48!Crem;;chr1:179374784..179374800,+!p2@Zfp238!0.92!8.59!Zfp238;;chr11:98190918..98190951,-!p1@Neurod2!0.92!7.40!Neurod2;;chr11:69749347..69749356,+!p8@Ybx2!0.92!7.23!Ybx2;;chr6:52190467..52190500,-!p1@Hoxa10!0.92!7.23!Hoxa10;;chr17:87153028..87153049,+!p2@Epas1!0.90!149.59!Epas1;;chr5:135582751..135582788,+!p1@Mlxipl!0.90!28.83!Mlxipl;;chr17:87153462..87153473,+!p3@Epas1!0.90!27.13!Epas1;;chr7:116154364..116154444,+!p1@Tub!0.90!12.16!Tub;;chr6:72850124..72850210,-!p7@Kcmf1!0.90!9.35!Kcmf1;;chr16:3872255..3872283,-!p4@Zfp597!0.89!10.04!Zfp597;;chr12:57636034..57636087,-!p1@Nkx2-1!0.89!6.80!Nkx2-1;;chr13:78164153..78164174,+!p1@Pou5f2!0.89!6.72!Pou5f2;;chr8:86590318..86590330,+!p3@Rfx1!0.89!6.72!Rfx1;;chr8:107033774..107033794,-!p1@Ccdc79!0.88!8.25!Ccdc79;;chr7:25655066..25655080,+!p2@Dmrtc2!0.88!6.63!Dmrtc2;;chr3:95032802..95032830,-!p7@Mllt11!0.88!6.63!Mllt11;;chr19:4989964..4989972,-!p1@Npas4!0.88!6.55!Npas4;;chr18:3337503..3337536,-!p7@Crem!0.87!11.48!Crem;;chr5:125342568..125342602,+!p2@Zfp664!0.87!10.72!Zfp664;;chr1:38721792..38721845,-!p1@Aff3!0.87!8.16!Aff3;;chr15:76353005..76353021,-!p2@Scrt1!0.87!6.38!Scrt1;;chr3:95032091..95032183,-!p1@Mllt11!0.86!57.23!Mllt11;;chr7:52960555..52960662,+!p1@Dbp!0.86!56.13!Dbp;;chr15:35225845..35225867,+!p1@Osr2!0.86!16.41!Osr2;;chr17:51971932..51971958,-!p2@Satb1!0.86!8.76!Satb1;;chr6:52195795..52195825,-!p1@Hoxa11!0.86!6.29!Hoxa11;;chr14:69790035..69790050,+!p2@Nkx2-6!0.86!6.21!Nkx2-6;;chr17:48015839..48015915,-!p3@Foxp4!0.85!7.31!Foxp4;;chr9:18282704..18282748,-!p3@Zfp558!0.85!6.04!Zfp558;;chr7:13420092..13420160,+!p2@Zfp110!0.84!11.65!Zfp110;;chr10:67375146..67375208,-!p2@Zfp365!0.84!9.44!Zfp365;;chr11:96143843..96143868,+!p3@Hoxb8!0.84!5.95!Hoxb8;;chr1:39777805..39777820,-!p2@Rfx8!0.84!5.95!Rfx8;;chr15:102828658..102828678,+!p1@Hoxc6!0.84!5.95!Hoxc6;;chr12:30219426..30219506,+!p2@Myt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chr16:43363968..43364001,+!p7@Zbtb20!0.43!3.74!Zbtb20;;chr12:39507404..39507441,+!p4@Etv1!0.43!2.72!Etv1;;chr12:72149359..72149406,+!p4@Arid4a!0.43!2.47!Arid4a;;chr12:86939997..86940040,+!p4@Jdp2!0.43!1.70!Jdp2;;chrX:95345005..95345053,+!p1@Ar!0.43!1.70!Ar;;chr11:100553754..100553787,-!p1@Zfp385c!0.43!1.70!Zfp385c;;chr11:98190955..98190968,-!p2@Neurod2!0.43!1.70!Neurod2;;chr11:90252108..90252134,-!p6@Hlf!0.43!1.70!Hlf;;chr5:77544170..77544181,-!p6@Hopx!0.43!1.70!Hopx;;chr19:25580110..25580163,+!p1@Dmrt1!0.43!1.70!Dmrt1;;chr4:89354785..89354801,+!p2@Dmrta1!0.43!1.70!Dmrta1;;chr4:44696781..44696790,-!p11@Pax5!0.43!1.70!Pax5;;chr1:52176315..52176343,+!p1@Stat1!0.42!33.93!Stat1;;chr16:4594740..4594759,+!p1@Glis2!0.42!26.79!Glis2;;chr6:117813087..117813121,+!p1@Zfp239!0.42!8.33!Zfp239;;chr9:55785981..55786009,-!p2@Scaper!0.42!5.78!Scaper;;chr11:85646263..85646278,+!p2@Tbx2!0.42!5.44!Tbx2;;chr5:77524231..77524245,-!p3@Hopx!0.42!5.27!Hopx;;chr2:91035197..91035237,-!p1@Nr1h3!0.42!4.25!Nr1h3;;chr10:80809447..80809515,-!p5@Hmg20b!0.42!2.21!Hmg20b;;chr3:51144436..51144443,-!p15@Elf2!0.42!1.62!Elf2;;chr3:3508024..3508069,+!p2@Hnf4g!0.42!1.62!Hnf4g;;chr2:74543103..74543135,+!p4@Hoxd8!0.42!1.62!Hoxd8;;chr2:74517742..74517758,+!p2@Hoxd11!0.42!1.62!Hoxd11;;chr9:98855868..98855895,+!p1@Foxl2!0.42!1.62!Foxl2;;chr7:52960888..52960902,+!p7@Dbp!0.42!1.62!Dbp;;chr12:77470141..77470154,-!p12@Zbtb25!0.42!1.62!Zbtb25;;chr14:70477113..70477173,+!p1@Egr3!0.42!1.62!Egr3;;chr14:13178147..13178185,-!p1@Fezf2!0.42!1.62!Fezf2;;chr12:77470158..77470168,-!p13@Zbtb25!0.42!1.62!Zbtb25;;chr2:103143315..103143328,-!p2@Ehf!0.42!1.62!Ehf;;chr2:180377011..180377020,-!p7@Tcfl5!0.42!1.62!Tcfl5;;chr2:65768174..65768247,+!p2@Csrnp3!0.42!1.62!Csrnp3;;chr1:33871436..33871445,-!p6@Zfp451!0.42!1.62!Zfp451;;chr19:5425367..5425388,-!p15@Drap1!0.42!1.62!Drap1;;chr18:35020854..35020869,+!p1@Egr1!0.41!89.55!Egr1;;chr12:99985145..99985256,+!p1@Zc3h14!0.41!78.58!Zc3h14;;chr16:42907676..42907797,+!p1@Zbtb20!0.41!29.94!Zbtb20;;chr18:3337399..3337422,-!p11@Crem!0.41!3.15!Crem;;chr16:42875918..42875940,+!p13@Zbtb20!0.41!3.15!Zbtb20;;chr19:23216132..23216157,+!p3@Klf9!0.41!2.89!Klf9;;chr9:51021788..51021802,+!p1@Pou2af1!0.41!2.04!Pou2af1;;chr11:70501419..70501483,-!p1@Camta2,p1@LOC100048818!0.40!23.22!Camta2;;chr7:30906934..30907020,+!p1@Zfp382!0.40!14.54!Zfp382;;chr4:126698529..126698536,+!p2@Sfpq!0.40!9.95!Sfpq;;chr2:37278526..37278575,-!p2@Rc3h2!0.40!8.93!Rc3h2;;chr9:63869751..63869767,-!p1@Smad6!0.40!5.36!Smad6;;chr15:78994907..78994926,-!p1@Sox10!0.40!5.10!Sox10;;chr1:9690474..9690493,-!p3@Mybl1!0.40!2.81!Mybl1;;chr12:109241852..109241873,-!p4@Bcl11b!0.40!1.96!Bcl11b;;chr13:44936126..44936164,+!p6@Jarid2!0.40!1.87!Jarid2;;chr14:76815156..76815181,+!p16@Tsc22d1!0.40!1.53!Tsc22d1;;chr2:61642558..61642595,+!p3@Tbr1!0.40!1.53!Tbr1;;chr17:51971991..51972003,-!p4@Satb1!0.40!1.53!Satb1;;chr16:50331086..50331091,-!p13@Bbx!0.40!1.53!Bbx;;chr7:52252978..52252989,+!p5@Irf3!0.40!1.53!Irf3;;chr9:24578720..24578735,-!p1@Tbx20!0.40!1.53!Tbx20;;chr10:5734677..5734702,-!p4@Esr1!0.40!1.53!Esr1;;chr11:11590117..11590138,+!p4@Ikzf1!0.40!1.53!Ikzf1;;chr6:52190840..52190853,-!p5@Hoxa10!0.40!1.53!Hoxa10;;chr5:107053373..107053380,-!p19@Zfp644!0.40!1.53!Zfp644;;chr7:134565301..134565311,-!p5@Zfp688!0.40!1.53!Zfp688;;chr4:142802594..142802631,-!p1@Prdm2!0.39!21.43!Prdm2;;chr16:43363190..43363242,+!p2@Zbtb20!0.39!6.12!Zbtb20;;chr6:90412556..90412581,+!p3@Klf15!0.39!4.17!Klf15;;chr15:37162796..37162828,+!p1@Grhl2!0.39!2.98!Grhl2;;chr11:98636400..98636418,-!p4@Nr1d1!0.39!2.21!Nr1d1;;chr3:95032197..95032208,-!p3@Mllt11!0.39!2.04!Mllt11;;chr2:77541432..77541474,-!p5@Zfp385b!0.39!1.45!Zfp385b;;chr2:81893535..81893548,+!p1@Zfp804a!0.39!1.45!Zfp804a;;chr3:98186461..98186476,+!p2@Zfp697!0.39!1.45!Zfp697;;chr10:84218895..84218909,+!p1@Rfx4!0.39!1.45!Rfx4;;chr11:69753885..69753892,+!p19@Ybx2!0.39!1.45!Ybx2;;chr10:50614546..50614568,+!p@chr10:50614546..50614568,+!0.39!1.45!Sim1;;chr5:35731667..35731680,+!p6@Hmx1!0.39!1.45!Hmx1;;chr19:59533429..59533470,+!p4@Emx2!0.39!1.45!Emx2;;chrX:55283799..55283813,+!p1@Zic3!0.39!1.45!Zic3;;chr14:63890459..63890484,-!p4@Gata4!0.39!1.45!Gata4;;chr12:57636220..57636236,-!p3@Nkx2-1!0.39!1.45!Nkx2-1;;chr12:32635417..32635425,-!p4@Hbp1!0.39!1.45!Hbp1;;chr8:12395603..12395621,+!p1@Sox1!0.39!1.45!Sox1;;chr17:3557813..3557824,-!p4@Tfb1m!0.39!1.45!Tfb1m;;chr19:28085572..28085579,-!p9@Rfx3!0.39!1.45!Rfx3;;chr2:181022663..181022712,-!p1@Gmeb2!0.38!21.77!Gmeb2;;chr16:95680889..95680991,-!p1@Erg!0.38!17.35!Erg;;chr14:55482892..55482988,-!p1@Homez!0.38!14.29!Homez;;chr9:69137672..69137702,+!p2@Rora!0.38!8.67!Rora;;chr2:77357622..77357704,-!p1@Zfp385b!0.38!5.19!Zfp385b;;chr11:100683839..100683890,-!p2@Stat5b!0.38!4.42!Stat5b;;chr15:76709662..76709676,+!p2@Zfp7!0.38!3.83!Zfp7;;chr13:31717548..31717596,+!p1@Foxf2!0.38!3.57!Foxf2;;chr7:130644017..130644092,-!p1@Zkscan2!0.38!3.49!Zkscan2;;chr11:85646427..85646451,+!p4@Tbx2!0.38!3.06!Tbx2;;chr7:91558472..91558512,-!p2@Arnt2!0.38!2.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503!0.27!1.19!Zfp503;;chr12:39510042..39510069,+!p8@Etv1!0.27!0.85!Etv1;;chr12:39510260..39510271,+!p10@Etv1!0.27!0.85!Etv1;;chr15:76352832..76352900,-!p1@Scrt1!0.27!0.85!Scrt1;;chr11:52095797..52095809,-!p5@Tcf7!0.27!0.85!Tcf7;;chr11:90250999..90251013,-!p8@Hlf!0.27!0.85!Hlf;;chr16:43235969..43235989,+!p20@Zbtb20!0.27!0.85!Zbtb20;;chr15:95485240..95485257,-!p1@Dbx2!0.27!0.85!Dbx2;;chr6:38097421..38097440,-!p7@D630045J12Rik!0.27!0.85!D630045J12Rik;;chr6:52167434..52167450,-!p3@Hoxa7!0.27!0.85!Hoxa7;;chr5:122366729..122366766,-!p16@Cux2!0.27!0.85!Cux2;;chr5:140019843..140019858,+!p2@Uncx!0.27!0.85!Uncx;;chr6:88148324..88148328,+!p3@Gata2!0.27!0.85!Gata2;;chr5:77524175..77524186,-!p8@Hopx!0.27!0.85!Hopx;;chr6:144152648..144152680,-!p5@Sox5!0.27!0.85!Sox5;;chr8:87297330..87297365,-!p5@Nfix!0.27!0.85!Nfix;;chr9:98855944..98855971,+!p4@Foxl2!0.27!0.85!Foxl2;;chr3:3508005..3508021,+!p3@Hnf4g!0.27!0.85!Hnf4g;;chr5:106887474..106887489,-!p1@Barhl2!0.27!0.85!Barhl2;;chr4:6917763..6917782,-!p6@Tox!0.27!0.85!Tox;;chr4:135728311..135728342,+!p3@E2f2!0.27!0.85!E2f2;;chr1:135557400..135557421,-!p4@Zbed6!0.27!0.85!Zbed6;;chr2:169968173..169968178,-!p2@Zfp217!0.27!0.85!Zfp217;;chr19:6164433..6164446,+!p2@Batf2!0.27!0.85!Batf2;;chr2:104966662..104966673,+!p4@Wt1!0.27!0.85!Wt1;;chr6:35083688..35083730,-!p1@Cnot4!0.26!83.17!Cnot4;;chr16:15887371..15887385,+!p1@Cebpd!0.26!56.13!Cebpd;;chr7:35841486..35841575,-!p1@Cebpg!0.26!41.16!Cebpg;;chr16:22439681..22439698,-!p1@Etv5!0.26!28.15!Etv5;;chr5:145965392..145965443,+!p1@Zkscan5!0.26!14.29!Zkscan5;;chr6:86619104..86619119,-!p1@Mxd1!0.26!12.67!Mxd1;;chr7:71083428..71083518,-!p3@Klf13!0.26!11.99!Klf13;;chr14:98568761..98568814,-!p2@Dach1!0.26!10.72!Dach1;;chr10:30522690..30522752,-!p2@Ncoa7!0.26!9.27!Ncoa7;;chr5:120121020..120121049,+!p1@Tbx3!0.26!9.27!Tbx3;;chr4:120488308..120488366,-!p1@Nfyc!0.26!8.76!Nfyc;;chr5:104121453..104121479,+!p4@Aff1!0.26!6.89!Aff1;;chr8:112603610..112603656,+!p1@Zfp612!0.26!6.80!Zfp612;;chr14:18493386..18493464,+!p1@Thrb!0.26!5.53!Thrb;;chr15:50721515..50721540,-!p3@Trps1!0.26!4.08!Trps1;;chr16:42907554..42907591,+!p5@Zbtb20!0.26!3.40!Zbtb20;;chr2:165818108..165818119,+!p2@Ncoa3!0.26!3.40!Ncoa3;;chr2:128793085..128793116,+!p2@Zc3h6!0.26!3.23!Zc3h6;;chr13:99954688..99954710,+!p2@Zfp366!0.26!2.38!Zfp366;;chr7:25862363..25862382,+!p2@Zfp574!0.26!2.21!Zfp574;;chr4:119486912..119486954,+!p3@Hivep3!0.26!2.04!Hivep3;;chr4:135129538..135129558,-!p1@Grhl3!0.26!1.70!Grhl3;;chr8:124984566..124984595,-!p1@Snai3!0.26!1.70!Snai3;;chr1:133904946..133904974,+!p7@Elk4!0.26!1.70!Elk4;;chr19:23215554..23215567,+!p5@Klf9!0.26!1.45!Klf9;;chr5:107003725..107003746,-!p5@Zfp644!0.26!1.36!Zfp644;;chr6:72185179..72185196,-!p4@Atoh8!0.26!1.36!Atoh8;;chr18:36441100..36441113,+!p3@Pura!0.26!1.11!Pura;;chr8:94881872..94881887,+!p2@Irx5!0.26!0.94!Irx5;;chr8:74842952..74842970,+!p1@Klf2!0.25!108.09!Klf2;;chr5:21290933..21291050,-!p1@Dnajc2!0.25!59.70!Dnajc2;;chr19:5424906..5425026,-!p1@Drap1!0.25!43.12!Drap1;;chr17:25325325..25325363,+!p1@Unkl!0.25!11.40!Unkl;;chr1:138521528..138521572,+!p1@Zfp281!0.25!8.84!Zfp281;;chr11:62602904..62602945,-!p1@Zfp286!0.25!6.72!Zfp286;;chr9:63869850..63869873,-!p2@Smad6!0.25!4.00!Smad6;;chr19:28086084..28086124,-!p6@Rfx3!0.25!3.74!Rfx3;;chr6:92042363..92042413,+!p3@Nr2c2!0.25!3.15!Nr2c2;;chr10:127896024..127896045,+!p3@Smarcc2!0.25!3.15!Smarcc2;;chr11:70501599..70501634,-!p2@Camta2,p2@LOC100048818!0.25!2.55!Camta2;;chr16:43619057..43619078,+!p8@Zbtb20!0.25!2.55!Zbtb20;;chr11:3189171..3189197,+!p4@Patz1!0.25!2.30!Patz1;;chr9:96653241..96653288,-!p1@E030011O05Rik,p5@Zbtb38!0.25!2.21!Zbtb38;;chr16:92697354..92697362,-!p3@Runx1!0.25!1.70!Runx1;;chr17:46520492..46520515,+!p4@Zfp318!0.25!1.53!Zfp318;;chr11:11585678..11585745,+!p5@Ikzf1!0.25!1.53!Ikzf1;;
@@ Line 38: / Line 43: @@
 |is_a=EFO:0002091;;FF:0000004;;FF:0000103
 |is_obsolete=
+|library_id=CNhs10609
+|library_id_phase_based=2:CNhs10609
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/Clontech%2520Mouse%2520Universal%2520Reference%2520Total%2520RNA%252c%2520pool1.CNhs10609.10001-101A3.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/Clontech%2520Mouse%2520Universal%2520Reference%2520Total%2520RNA%252c%2520pool1.CNhs10609.10001-101A3.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/Clontech%2520Mouse%2520Universal%2520Reference%2520Total%2520RNA%252c%2520pool1.CNhs10609.10001-101A3.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/Clontech%2520Mouse%2520Universal%2520Reference%2520Total%2520RNA%252c%2520pool1.CNhs10609.10001-101A3.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/Clontech%2520Mouse%2520Universal%2520Reference%2520Total%2520RNA%252c%2520pool1.CNhs10609.10001-101A3.mm9.nobarcode.rdna.fa.gz
 |name=Clontech Mouse Universal Reference Total RNA, pool1
 |namespace=FANTOM5
@@ Line 43: / Line 55: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10609,LSID656,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=0.069205145037417,0.0354470656487682,0.0354470656487682,0,0,0,0.0504626559930959,0,0.016237489816948,0,0,-0.0488921747477733,0.0354470656487682,0,0,0.00287740603387638,0.702808184796584,0,-0.191893350882575,0.63515069179384,0.271052175481388,0,0,0.0354470656487682,0.0682179984609265,0,0.0354470656487682,0.225398799517185,0.0354470656487682,0.560664721474883,0.0643254229730425,0,0.101666158568684,0,1.16202293741674,0.857824429048094,0.225398799517185,0.0976929398174453,0.114582340120523,0.0816303225171042,-0.0126440854624756,0.154296381533113,0.103170808453595,0,0.0193162580719021,0,0,0,0,0,1.40350453859856,0.0354470656487682,0,0,0,-0.0660055475634404,0,0.0447967875023084,0.0986886653414259,0,0,0.225398799517185,0.116039962118659,0,0,0.0682179984609265,-0.0153287736277385,-0.24243265887846,0.0209606027615347,0.0566897580132885,0.0682179984609265,0.00136383404063634,0.118237743236505,0.344087628424147,0.0986886653414259,0.0177235328243841,0.0711649501513594,0.0592071260626978,-0.0153971957720909,0.0750492317713172,0.112665567774263,0.958043400587127,0.0392314187828934,0.268244893206496,0,0,0.0442660955387016,-0.10041981211551,-0.0534910230255868,0.0354470656487682,0,0.0986886653414259,0,0.0168712480857752
 |rna_box=101
 |rna_catalog_number=Cat:636657
@@ Line 58: / Line 71: @@
 |rna_weight_ug=200
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 70: / Line 84: @@
 |sample_ethnicity=
 |sample_experimental_condition=
-|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.15392863424665e-264!GO:0005737;cytoplasm;7.77846402009826e-195!GO:0044444;cytoplasmic part;2.17389085949375e-123!GO:0043226;organelle;4.59215610993726e-104!GO:0043229;intracellular organelle;9.46914176239472e-104!GO:0043227;membrane-bound organelle;2.69818378588046e-94!GO:0043231;intracellular membrane-bound organelle;2.72717209182891e-94!GO:0044422;organelle part;1.56293509719169e-80!GO:0044446;intracellular organelle part;2.75046987567741e-79!GO:0005515;protein binding;2.22869066170654e-72!GO:0032991;macromolecular complex;1.64512896107003e-59!GO:0005739;mitochondrion;2.14331763052161e-52!GO:0016043;cellular component organization and biogenesis;1.16653457493129e-49!GO:0031090;organelle membrane;2.68232578281537e-38!GO:0019538;protein metabolic process;5.54728660859236e-37!GO:0030529;ribonucleoprotein complex;7.22841442458583e-37!GO:0044237;cellular metabolic process;7.26078942457717e-36!GO:0003723;RNA binding;1.04687388938832e-35!GO:0044429;mitochondrial part;1.97955527555451e-35!GO:0043234;protein complex;3.11417419842391e-35!GO:0043233;organelle lumen;1.12498428274729e-34!GO:0031974;membrane-enclosed lumen;1.12498428274729e-34!GO:0031967;organelle envelope;2.23054470980627e-34!GO:0031975;envelope;3.03756439314581e-34!GO:0044238;primary metabolic process;6.98477546743143e-34!GO:0033036;macromolecule localization;1.90449293732481e-33!GO:0044260;cellular macromolecule metabolic process;1.26724247925436e-32!GO:0044428;nuclear part;4.20377213666152e-32!GO:0044267;cellular protein metabolic process;1.33748101070514e-31!GO:0015031;protein transport;1.42803771481416e-31!GO:0008104;protein localization;2.49477461475197e-30!GO:0046907;intracellular transport;2.57892153729705e-30!GO:0045184;establishment of protein localization;1.99746875110498e-29!GO:0005829;cytosol;3.39686004362297e-28!GO:0043170;macromolecule metabolic process;1.54582545309791e-25!GO:0005740;mitochondrial envelope;1.54582545309791e-25!GO:0031966;mitochondrial membrane;2.14794622355338e-25!GO:0065003;macromolecular complex assembly;5.50483273507093e-25!GO:0051641;cellular localization;1.07940705380802e-24!GO:0051649;establishment of cellular localization;1.27755629307056e-24!GO:0022607;cellular component assembly;2.05783610743652e-24!GO:0005840;ribosome;2.21855537614886e-23!GO:0019866;organelle inner membrane;8.45685633623428e-23!GO:0005743;mitochondrial inner membrane;2.82076321313345e-22!GO:0006996;organelle organization and biogenesis;5.22343959814609e-22!GO:0006412;translation;1.01960654318407e-21!GO:0016192;vesicle-mediated transport;1.08229731622916e-21!GO:0006886;intracellular protein transport;1.15197853607914e-21!GO:0016071;mRNA metabolic process;9.37726147210583e-21!GO:0006119;oxidative phosphorylation;3.12190171340634e-20!GO:0003735;structural constituent of ribosome;4.44607062619025e-20!GO:0043228;non-membrane-bound organelle;4.60824053289908e-19!GO:0043232;intracellular non-membrane-bound organelle;4.60824053289908e-19!GO:0009058;biosynthetic process;6.65941411300219e-19!GO:0033279;ribosomal subunit;2.65416658661778e-18!GO:0008380;RNA splicing;2.65416658661778e-18!GO:0031981;nuclear lumen;6.94116719474827e-18!GO:0044249;cellular biosynthetic process;4.23758594779993e-17!GO:0048770;pigment granule;1.13584556362743e-16!GO:0042470;melanosome;1.13584556362743e-16!GO:0006397;mRNA processing;1.5771607132543e-16!GO:0006396;RNA processing;1.83544972877613e-16!GO:0044265;cellular macromolecule catabolic process;1.83744718763735e-16!GO:0044248;cellular catabolic process;2.46300185658617e-16!GO:0009059;macromolecule biosynthetic process;4.07343857001115e-16!GO:0031988;membrane-bound vesicle;6.90309615837938e-16!GO:0031982;vesicle;8.71327850926606e-16!GO:0016023;cytoplasmic membrane-bound vesicle;1.86627622354464e-15!GO:0005773;vacuole;2.44518086193941e-15!GO:0031410;cytoplasmic vesicle;2.4659046646489e-15!GO:0005783;endoplasmic reticulum;3.35009349030428e-15!GO:0005634;nucleus;7.86579018518932e-15!GO:0044455;mitochondrial membrane part;7.59768785665227e-14!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.00359230049322e-14!GO:0005746;mitochondrial respiratory chain;9.53669861995172e-14!GO:0008134;transcription factor binding;1.97043270785569e-13!GO:0000323;lytic vacuole;2.38508810666537e-13!GO:0005764;lysosome;2.38508810666537e-13!GO:0012505;endomembrane system;4.18587139845015e-13!GO:0016874;ligase activity;5.03987970918358e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.41801346757542e-13!GO:0051186;cofactor metabolic process;7.83096654372888e-13!GO:0005681;spliceosome;8.29803723094062e-13!GO:0031980;mitochondrial lumen;9.21394812930734e-13!GO:0005759;mitochondrial matrix;9.21394812930734e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.06074553118194e-12!GO:0003954;NADH dehydrogenase activity;1.06074553118194e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.06074553118194e-12!GO:0000166;nucleotide binding;1.53438800581198e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.54944299945681e-12!GO:0006457;protein folding;3.57913133690186e-12!GO:0005794;Golgi apparatus;4.47196817074707e-12!GO:0009057;macromolecule catabolic process;4.67235909639931e-12!GO:0005654;nucleoplasm;5.05982278399328e-12!GO:0044445;cytosolic part;6.41546541888504e-12!GO:0051082;unfolded protein binding;8.63576929044962e-12!GO:0006512;ubiquitin cycle;1.37722651081553e-11!GO:0000502;proteasome complex (sensu Eukaryota);2.03161341909796e-11!GO:0009055;electron carrier activity;2.07694496810625e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.10055334068277e-11!GO:0006732;coenzyme metabolic process;4.10055334068277e-11!GO:0030964;NADH dehydrogenase complex (quinone);9.36746144610411e-11!GO:0045271;respiratory chain complex I;9.36746144610411e-11!GO:0005747;mitochondrial respiratory chain complex I;9.36746144610411e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;9.74637189991183e-11!GO:0048193;Golgi vesicle transport;1.01526155798164e-10!GO:0008565;protein transporter activity;1.19868059989831e-10!GO:0009056;catabolic process;1.7295512695538e-10!GO:0019941;modification-dependent protein catabolic process;1.77603803932196e-10!GO:0043632;modification-dependent macromolecule catabolic process;1.77603803932196e-10!GO:0042775;organelle ATP synthesis coupled electron transport;1.79812090701118e-10!GO:0042773;ATP synthesis coupled electron transport;1.79812090701118e-10!GO:0022618;protein-RNA complex assembly;2.20892629797398e-10!GO:0006511;ubiquitin-dependent protein catabolic process;2.20892629797398e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.43158100494746e-10!GO:0008092;cytoskeletal protein binding;2.47610437097422e-10!GO:0006461;protein complex assembly;2.52166416372963e-10!GO:0044257;cellular protein catabolic process;2.78245066398443e-10!GO:0015935;small ribosomal subunit;4.47497493214057e-10!GO:0005635;nuclear envelope;5.74853126661183e-10!GO:0006605;protein targeting;6.48375959215487e-10!GO:0016462;pyrophosphatase activity;6.58966346854131e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.81840987491691e-10!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.91120178211206e-10!GO:0016044;membrane organization and biogenesis;8.13789524434768e-10!GO:0016817;hydrolase activity, acting on acid anhydrides;8.16144269022215e-10!GO:0006464;protein modification process;1.00797698920006e-09!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.03179040883371e-09!GO:0043412;biopolymer modification;1.30208050870298e-09!GO:0006793;phosphorus metabolic process;1.51207665171125e-09!GO:0006796;phosphate metabolic process;1.51207665171125e-09!GO:0019829;cation-transporting ATPase activity;1.65266928153075e-09!GO:0043687;post-translational protein modification;1.92568910646232e-09!GO:0006913;nucleocytoplasmic transport;2.10290150733994e-09!GO:0044451;nucleoplasm part;2.21134185523196e-09!GO:0017111;nucleoside-triphosphatase activity;2.26986369096349e-09!GO:0044432;endoplasmic reticulum part;2.26986369096349e-09!GO:0015934;large ribosomal subunit;3.77633818777602e-09!GO:0051169;nuclear transport;5.16297105675451e-09!GO:0015630;microtubule cytoskeleton;6.09995870439872e-09!GO:0015986;ATP synthesis coupled proton transport;6.1724568532547e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.1724568532547e-09!GO:0030036;actin cytoskeleton organization and biogenesis;7.23463903095207e-09!GO:0007010;cytoskeleton organization and biogenesis;1.41625486701664e-08!GO:0008135;translation factor activity, nucleic acid binding;1.45393115662613e-08!GO:0005768;endosome;2.5007326352606e-08!GO:0009060;aerobic respiration;3.27953767417054e-08!GO:0043285;biopolymer catabolic process;3.46663535689483e-08!GO:0031965;nuclear membrane;4.13022598608399e-08!GO:0017076;purine nucleotide binding;4.32867359075165e-08!GO:0045333;cellular respiration;4.81122314458772e-08!GO:0006446;regulation of translational initiation;5.81906448277055e-08!GO:0030163;protein catabolic process;5.99942060239103e-08!GO:0003712;transcription cofactor activity;7.30495343647884e-08!GO:0008639;small protein conjugating enzyme activity;7.72796840643676e-08!GO:0048523;negative regulation of cellular process;8.58580855649813e-08!GO:0032553;ribonucleotide binding;8.91525856726441e-08!GO:0032555;purine ribonucleotide binding;8.91525856726441e-08!GO:0004842;ubiquitin-protein ligase activity;9.03558993813206e-08!GO:0019787;small conjugating protein ligase activity;1.14277821091936e-07!GO:0006323;DNA packaging;1.15704380353971e-07!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.20787532694136e-07!GO:0030029;actin filament-based process;1.71759892810485e-07!GO:0051246;regulation of protein metabolic process;1.72877755797994e-07!GO:0016491;oxidoreductase activity;1.92803506978606e-07!GO:0051179;localization;2.11306619030859e-07!GO:0016881;acid-amino acid ligase activity;2.11348181606264e-07!GO:0007049;cell cycle;2.22776078639441e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.43904632776639e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;2.52292558125171e-07!GO:0000375;RNA splicing, via transesterification reactions;2.52292558125171e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.52292558125171e-07!GO:0006099;tricarboxylic acid cycle;2.56196839755648e-07!GO:0046356;acetyl-CoA catabolic process;2.56196839755648e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.69261526669267e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.7727753316557e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;3.04917931400087e-07!GO:0051187;cofactor catabolic process;3.72391270795031e-07!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.25483688699682e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.81975862220308e-07!GO:0005789;endoplasmic reticulum membrane;5.81975862220308e-07!GO:0006754;ATP biosynthetic process;6.25323924321736e-07!GO:0006753;nucleoside phosphate metabolic process;6.25323924321736e-07!GO:0045045;secretory pathway;6.48106715322393e-07!GO:0046034;ATP metabolic process;7.3224595402276e-07!GO:0016604;nuclear body;7.98481797503077e-07!GO:0006082;organic acid metabolic process;8.480083717737e-07!GO:0006091;generation of precursor metabolites and energy;9.01235598365598e-07!GO:0005793;ER-Golgi intermediate compartment;9.4293851040249e-07!GO:0009109;coenzyme catabolic process;1.02420224172069e-06!GO:0005761;mitochondrial ribosome;1.05803598770485e-06!GO:0000313;organellar ribosome;1.05803598770485e-06!GO:0005643;nuclear pore;1.08270608475256e-06!GO:0016310;phosphorylation;1.20620852088935e-06!GO:0031252;leading edge;1.43964176136219e-06!GO:0019752;carboxylic acid metabolic process;1.57574715697766e-06!GO:0048519;negative regulation of biological process;1.59550809166755e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.72775036845934e-06!GO:0006413;translational initiation;1.78398282301458e-06!GO:0044453;nuclear membrane part;1.83575476371291e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.40041204700287e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.40041204700287e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.47539886804751e-06!GO:0006810;transport;2.53119031006509e-06!GO:0019318;hexose metabolic process;2.6598507548039e-06!GO:0006897;endocytosis;2.73898983395765e-06!GO:0010324;membrane invagination;2.73898983395765e-06!GO:0006084;acetyl-CoA metabolic process;2.73898983395765e-06!GO:0050657;nucleic acid transport;3.18627460992733e-06!GO:0051236;establishment of RNA localization;3.18627460992733e-06!GO:0050658;RNA transport;3.18627460992733e-06!GO:0048475;coated membrane;3.33730624927433e-06!GO:0030117;membrane coat;3.33730624927433e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.34011675428301e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.34011675428301e-06!GO:0016607;nuclear speck;3.48733130296348e-06!GO:0009142;nucleoside triphosphate biosynthetic process;3.5149549288597e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.5149549288597e-06!GO:0003779;actin binding;3.53813548432296e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.59257471123602e-06!GO:0003924;GTPase activity;3.8409230055408e-06!GO:0009141;nucleoside triphosphate metabolic process;3.8409230055408e-06!GO:0015980;energy derivation by oxidation of organic compounds;3.85689651829847e-06!GO:0005996;monosaccharide metabolic process;3.87511286794794e-06!GO:0006403;RNA localization;4.30853294110165e-06!GO:0009259;ribonucleotide metabolic process;4.6357631268551e-06!GO:0006007;glucose catabolic process;4.86265797898063e-06!GO:0009150;purine ribonucleotide metabolic process;5.26540131019113e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.319081004718e-06!GO:0009152;purine ribonucleotide biosynthetic process;6.97471842953124e-06!GO:0006006;glucose metabolic process;7.13542231867179e-06!GO:0017038;protein import;7.24366758172698e-06!GO:0006163;purine nucleotide metabolic process;7.62725866396584e-06!GO:0005905;coated pit;8.03172847588522e-06!GO:0009260;ribonucleotide biosynthetic process;8.2457982159799e-06!GO:0008219;cell death;8.85569109303345e-06!GO:0016265;death;8.85569109303345e-06!GO:0006333;chromatin assembly or disassembly;9.44694217005646e-06!GO:0048471;perinuclear region of cytoplasm;9.51089698797933e-06!GO:0006752;group transfer coenzyme metabolic process;1.00643959550186e-05!GO:0051276;chromosome organization and biogenesis;1.01947803216507e-05!GO:0006164;purine nucleotide biosynthetic process;1.0727452898538e-05!GO:0012501;programmed cell death;1.16223728568211e-05!GO:0019899;enzyme binding;1.21558257203292e-05!GO:0022890;inorganic cation transmembrane transporter activity;1.22600045841185e-05!GO:0006259;DNA metabolic process;1.26621820133397e-05!GO:0005730;nucleolus;1.30219984189534e-05!GO:0006915;apoptosis;1.42328454591933e-05!GO:0043283;biopolymer metabolic process;1.44509374645854e-05!GO:0051234;establishment of localization;1.55671759230004e-05!GO:0044440;endosomal part;1.57036920219977e-05!GO:0010008;endosome membrane;1.57036920219977e-05!GO:0022402;cell cycle process;1.6486099647964e-05!GO:0046164;alcohol catabolic process;1.72323408031108e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.83416108813248e-05!GO:0005525;GTP binding;1.87778760776178e-05!GO:0044262;cellular carbohydrate metabolic process;1.96134371226725e-05!GO:0043069;negative regulation of programmed cell death;2.15644487855753e-05!GO:0030554;adenyl nucleotide binding;2.76510467589909e-05!GO:0043066;negative regulation of apoptosis;2.77218830182156e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.04759556842967e-05!GO:0046365;monosaccharide catabolic process;3.11125338240265e-05!GO:0000785;chromatin;3.23137403964701e-05!GO:0005741;mitochondrial outer membrane;3.2668960206855e-05!GO:0006066;alcohol metabolic process;3.30106416105181e-05!GO:0019320;hexose catabolic process;3.69335263414909e-05!GO:0044275;cellular carbohydrate catabolic process;3.79014792127074e-05!GO:0005874;microtubule;3.93021746197374e-05!GO:0032940;secretion by cell;3.94281384190385e-05!GO:0003743;translation initiation factor activity;4.00388758709012e-05!GO:0042623;ATPase activity, coupled;4.06705010541559e-05!GO:0030120;vesicle coat;4.26789662766686e-05!GO:0030662;coated vesicle membrane;4.26789662766686e-05!GO:0006916;anti-apoptosis;4.43865755729106e-05!GO:0032559;adenyl ribonucleotide binding;4.52330461620561e-05!GO:0051028;mRNA transport;4.55599942788293e-05!GO:0046930;pore complex;4.76011853074159e-05!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;4.78294981152477e-05!GO:0006366;transcription from RNA polymerase II promoter;4.84968163855825e-05!GO:0065004;protein-DNA complex assembly;5.33269513335431e-05!GO:0045259;proton-transporting ATP synthase complex;5.57898656964333e-05!GO:0005524;ATP binding;6.72226800810278e-05!GO:0005770;late endosome;7.45858150609295e-05!GO:0051287;NAD binding;7.49101642608133e-05!GO:0042802;identical protein binding;8.60096482036487e-05!GO:0006096;glycolysis;8.84377147120688e-05!GO:0008654;phospholipid biosynthetic process;8.9235842950412e-05!GO:0031497;chromatin assembly;9.23509472583355e-05!GO:0006606;protein import into nucleus;9.54739984397394e-05!GO:0031968;organelle outer membrane;9.80519509912217e-05!GO:0051170;nuclear import;0.000103308652319701!GO:0006334;nucleosome assembly;0.000108948283723452!GO:0005774;vacuolar membrane;0.000108948283723452!GO:0016887;ATPase activity;0.000123926303282691!GO:0044437;vacuolar part;0.000124488523440953!GO:0019867;outer membrane;0.00015476246724227!GO:0050662;coenzyme binding;0.000158541310893593!GO:0000786;nucleosome;0.000177994887928299!GO:0016049;cell growth;0.000181682487139269!GO:0003713;transcription coactivator activity;0.000181682487139269!GO:0065002;intracellular protein transport across a membrane;0.00018170412289949!GO:0016564;transcription repressor activity;0.000186446867276533!GO:0044255;cellular lipid metabolic process;0.000188965257473572!GO:0008361;regulation of cell size;0.000198588690390861!GO:0004298;threonine endopeptidase activity;0.000234651437135107!GO:0006613;cotranslational protein targeting to membrane;0.00023891533958397!GO:0032446;protein modification by small protein conjugation;0.000258283710980608!GO:0015631;tubulin binding;0.000260748144179781!GO:0005815;microtubule organizing center;0.000288197725487633!GO:0030135;coated vesicle;0.000296826590261017!GO:0032561;guanyl ribonucleotide binding;0.000304627778271904!GO:0019001;guanyl nucleotide binding;0.000304627778271904!GO:0051168;nuclear export;0.000318930909981485!GO:0007264;small GTPase mediated signal transduction;0.000330022910773801!GO:0003724;RNA helicase activity;0.000335498423111625!GO:0045786;negative regulation of progression through cell cycle;0.000353464931750557!GO:0003714;transcription corepressor activity;0.00035453686180489!GO:0016567;protein ubiquitination;0.000372013693531137!GO:0001666;response to hypoxia;0.000374251150016116!GO:0030133;transport vesicle;0.000389750504347133!GO:0043623;cellular protein complex assembly;0.000426170450732427!GO:0008026;ATP-dependent helicase activity;0.000446117504198102!GO:0051128;regulation of cellular component organization and biogenesis;0.000459885851085558!GO:0048037;cofactor binding;0.000468993934588687!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000515289809466633!GO:0051188;cofactor biosynthetic process;0.000523080381556796!GO:0001558;regulation of cell growth;0.000530574027218364!GO:0005813;centrosome;0.000560700836605482!GO:0030532;small nuclear ribonucleoprotein complex;0.000586447523892758!GO:0051789;response to protein stimulus;0.000604858442138794!GO:0006986;response to unfolded protein;0.000604858442138794!GO:0000245;spliceosome assembly;0.000620721827847918!GO:0008610;lipid biosynthetic process;0.000620721827847918!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000678614393458275!GO:0030118;clathrin coat;0.000706580278383973!GO:0031072;heat shock protein binding;0.000728209891314954!GO:0008154;actin polymerization and/or depolymerization;0.000801529010978352!GO:0032787;monocarboxylic acid metabolic process;0.000818369053397559!GO:0000151;ubiquitin ligase complex;0.000850807590540518!GO:0051427;hormone receptor binding;0.000936254125941103!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000936733376101918!GO:0016052;carbohydrate catabolic process;0.000936733376101918!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000936733376101918!GO:0015399;primary active transmembrane transporter activity;0.000936733376101918!GO:0005856;cytoskeleton;0.000939907060107742!GO:0009892;negative regulation of metabolic process;0.000955645756998169!GO:0009108;coenzyme biosynthetic process;0.00100654023605352!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00104413875584985!GO:0005798;Golgi-associated vesicle;0.00112512729904337!GO:0004386;helicase activity;0.00114160140117524!GO:0045454;cell redox homeostasis;0.00114853531270018!GO:0005083;small GTPase regulator activity;0.00125311881286869!GO:0042995;cell projection;0.00125988143335174!GO:0008186;RNA-dependent ATPase activity;0.00137508020471345!GO:0046467;membrane lipid biosynthetic process;0.00142588189925939!GO:0016791;phosphoric monoester hydrolase activity;0.00146139682814319!GO:0006643;membrane lipid metabolic process;0.0015384493065998!GO:0035257;nuclear hormone receptor binding;0.00166674506651002!GO:0004364;glutathione transferase activity;0.00166674506651002!GO:0008287;protein serine/threonine phosphatase complex;0.00173032304409622!GO:0005788;endoplasmic reticulum lumen;0.00176311837001263!GO:0005975;carbohydrate metabolic process;0.00176648294983688!GO:0042981;regulation of apoptosis;0.00180316946795702!GO:0006414;translational elongation;0.00185090156438652!GO:0016568;chromatin modification;0.0018863747460284!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0019201428311664!GO:0051920;peroxiredoxin activity;0.00199247525755233!GO:0006629;lipid metabolic process;0.00199828207929914!GO:0005048;signal sequence binding;0.00212743115373414!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00223063227175552!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0022337308202427!GO:0043067;regulation of programmed cell death;0.00223955378861879!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00225467100437343!GO:0044431;Golgi apparatus part;0.00225467100437343!GO:0008250;oligosaccharyl transferase complex;0.00226232049312676!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00228418883995131!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00228418883995131!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00228418883995131!GO:0043492;ATPase activity, coupled to movement of substances;0.00232534219028821!GO:0005765;lysosomal membrane;0.00239457480895947!GO:0016563;transcription activator activity;0.00243628315995152!GO:0031324;negative regulation of cellular metabolic process;0.00250064203229005!GO:0030695;GTPase regulator activity;0.00264399219984573!GO:0003729;mRNA binding;0.00266064849095567!GO:0030027;lamellipodium;0.00271178945215348!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00280274469356283!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00282189976566861!GO:0030867;rough endoplasmic reticulum membrane;0.00288863898419035!GO:0005875;microtubule associated complex;0.00289907557239119!GO:0051726;regulation of cell cycle;0.00300371595869953!GO:0016311;dephosphorylation;0.0030172502524691!GO:0005791;rough endoplasmic reticulum;0.00303139041563066!GO:0007286;spermatid development;0.00303737582149737!GO:0006595;polyamine metabolic process;0.00306105917256875!GO:0003697;single-stranded DNA binding;0.00327728673843973!GO:0043566;structure-specific DNA binding;0.00341478713118452!GO:0008286;insulin receptor signaling pathway;0.00342026565663065!GO:0033673;negative regulation of kinase activity;0.00342337970138233!GO:0006469;negative regulation of protein kinase activity;0.00342337970138233!GO:0019208;phosphatase regulator activity;0.0034858446960308!GO:0001726;ruffle;0.00364250881325671!GO:0007017;microtubule-based process;0.003661661107004!GO:0004004;ATP-dependent RNA helicase activity;0.00368776134262608!GO:0007265;Ras protein signal transduction;0.00370547186507156!GO:0016126;sterol biosynthetic process;0.0038209884692708!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00393161214207354!GO:0004812;aminoacyl-tRNA ligase activity;0.00393161214207354!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00393161214207354!GO:0008047;enzyme activator activity;0.00405972434464462!GO:0000074;regulation of progression through cell cycle;0.00412877181206546!GO:0006612;protein targeting to membrane;0.00413667186995018!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00421348043218316!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00447157153161413!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00460342654764889!GO:0015002;heme-copper terminal oxidase activity;0.00460342654764889!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00460342654764889!GO:0004129;cytochrome-c oxidase activity;0.00460342654764889!GO:0006631;fatty acid metabolic process;0.00492593062009696!GO:0006607;NLS-bearing substrate import into nucleus;0.00507214548989943!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.00508739203014697!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00521481867820711!GO:0051674;localization of cell;0.00524322339284968!GO:0006928;cell motility;0.00524322339284968!GO:0048487;beta-tubulin binding;0.00541982958359708!GO:0046903;secretion;0.00583548081224608!GO:0043407;negative regulation of MAP kinase activity;0.00584906807176142!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00615393505553025!GO:0008139;nuclear localization sequence binding;0.00617288850529659!GO:0000059;protein import into nucleus, docking;0.00625071714008012!GO:0048515;spermatid differentiation;0.00632464629348931!GO:0006979;response to oxidative stress;0.00632699985399745!GO:0019904;protein domain specific binding;0.00643187450046754!GO:0005769;early endosome;0.00645040924039446!GO:0043038;amino acid activation;0.00652491348625434!GO:0006418;tRNA aminoacylation for protein translation;0.00652491348625434!GO:0043039;tRNA aminoacylation;0.00652491348625434!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00662982190949039!GO:0005885;Arp2/3 protein complex;0.00662982190949039!GO:0033116;ER-Golgi intermediate compartment membrane;0.0069427201522551!GO:0006650;glycerophospholipid metabolic process;0.00694665376982694!GO:0004576;oligosaccharyl transferase activity;0.00714358684105208!GO:0043488;regulation of mRNA stability;0.00727759358232797!GO:0043487;regulation of RNA stability;0.00727759358232797!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00730206667451679!GO:0004667;prostaglandin-D synthase activity;0.00730206667451679!GO:0050802;circadian sleep/wake cycle, sleep;0.00730206667451679!GO:0022410;circadian sleep/wake cycle process;0.00730206667451679!GO:0042749;regulation of circadian sleep/wake cycle;0.00730206667451679!GO:0003746;translation elongation factor activity;0.00741564805947398!GO:0031902;late endosome membrane;0.00779017896224312!GO:0016197;endosome transport;0.00779017896224312!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.00787178299145772!GO:0012506;vesicle membrane;0.00792991598497488!GO:0004300;enoyl-CoA hydratase activity;0.00794489327871365!GO:0051087;chaperone binding;0.00808637798806436!GO:0051258;protein polymerization;0.00829186727831284!GO:0006818;hydrogen transport;0.00838654119961399!GO:0004674;protein serine/threonine kinase activity;0.00884463368377851!GO:0004177;aminopeptidase activity;0.00890542097673614!GO:0005762;mitochondrial large ribosomal subunit;0.00902321462960018!GO:0000315;organellar large ribosomal subunit;0.00902321462960018!GO:0016481;negative regulation of transcription;0.00909795444099833!GO:0015992;proton transport;0.009188536644387!GO:0035258;steroid hormone receptor binding;0.00928431054833049!GO:0019843;rRNA binding;0.00937443096072272!GO:0017166;vinculin binding;0.00940597039849956!GO:0051348;negative regulation of transferase activity;0.00959627807821149!GO:0051248;negative regulation of protein metabolic process;0.00965632954707399!GO:0019888;protein phosphatase regulator activity;0.00994377829580578!GO:0016301;kinase activity;0.01002507828151!GO:0030100;regulation of endocytosis;0.0100571731066037!GO:0006898;receptor-mediated endocytosis;0.0101791507645722!GO:0006891;intra-Golgi vesicle-mediated transport;0.0102086454894822!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0103146252265486!GO:0006402;mRNA catabolic process;0.0103424328592792!GO:0030041;actin filament polymerization;0.0103591040251713!GO:0010467;gene expression;0.0103883390592653!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0106092173582287!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.0106796913688639!GO:0030139;endocytic vesicle;0.0109847737364167!GO:0043021;ribonucleoprotein binding;0.0109847737364167!GO:0000902;cell morphogenesis;0.0115743374517828!GO:0032989;cellular structure morphogenesis;0.0115743374517828!GO:0044433;cytoplasmic vesicle part;0.0115743374517828!GO:0006749;glutathione metabolic process;0.011578884067238!GO:0006767;water-soluble vitamin metabolic process;0.0116847444678348!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0119003000819246!GO:0007243;protein kinase cascade;0.0121349904116067!GO:0030518;steroid hormone receptor signaling pathway;0.0125495893357782!GO:0044427;chromosomal part;0.0128978860100351!GO:0048468;cell development;0.0130971132033854!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0131069546818683!GO:0004721;phosphoprotein phosphatase activity;0.0131069546818683!GO:0005667;transcription factor complex;0.0134431134274129!GO:0046474;glycerophospholipid biosynthetic process;0.013470921833977!GO:0030132;clathrin coat of coated pit;0.0136194578006015!GO:0046488;phosphatidylinositol metabolic process;0.0140108121872073!GO:0008017;microtubule binding;0.0140108121872073!GO:0016740;transferase activity;0.0147843789753457!GO:0006405;RNA export from nucleus;0.014844715418116!GO:0031124;mRNA 3'-end processing;0.0152983658821529!GO:0018196;peptidyl-asparagine modification;0.0155022525428532!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0155022525428532!GO:0051540;metal cluster binding;0.0155631491351666!GO:0051536;iron-sulfur cluster binding;0.0155631491351666!GO:0006644;phospholipid metabolic process;0.0155748585690566!GO:0048154;S100 beta binding;0.0157763006932211!GO:0043209;myelin sheath;0.0162888521894972!GO:0005869;dynactin complex;0.0167173185326075!GO:0006665;sphingolipid metabolic process;0.0169103176976285!GO:0005777;peroxisome;0.0170505458772636!GO:0042579;microbody;0.0170505458772636!GO:0000159;protein phosphatase type 2A complex;0.0173190047374526!GO:0007272;ensheathment of neurons;0.0174540890944943!GO:0008366;axon ensheathment;0.0174540890944943!GO:0019887;protein kinase regulator activity;0.0176953502343791!GO:0005096;GTPase activator activity;0.0179589760541996!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0183176411881518!GO:0019902;phosphatase binding;0.019064198260057!GO:0006695;cholesterol biosynthetic process;0.0193590646901727!GO:0000096;sulfur amino acid metabolic process;0.0196421869256742!GO:0015629;actin cytoskeleton;0.0198096980951347!GO:0045892;negative regulation of transcription, DNA-dependent;0.0206155202503517!GO:0004680;casein kinase activity;0.0214002986073729!GO:0030658;transport vesicle membrane;0.0214023579153657!GO:0030659;cytoplasmic vesicle membrane;0.0214549588751965!GO:0006635;fatty acid beta-oxidation;0.0215084903017451!GO:0043284;biopolymer biosynthetic process;0.0216522336344091!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0216749706837665!GO:0030127;COPII vesicle coat;0.0216749706837665!GO:0012507;ER to Golgi transport vesicle membrane;0.0216749706837665!GO:0030134;ER to Golgi transport vesicle;0.0218691583709305!GO:0051252;regulation of RNA metabolic process;0.0222533948496206!GO:0050811;GABA receptor binding;0.0223785712749764!GO:0007005;mitochondrion organization and biogenesis;0.0223819056379941!GO:0006596;polyamine biosynthetic process;0.0228776129213693!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0231098273992012!GO:0016787;hydrolase activity;0.0239274316596845!GO:0035042;fertilization, exchange of chromosomal proteins;0.0240568226924047!GO:0035041;sperm chromatin decondensation;0.0240568226924047!GO:0007050;cell cycle arrest;0.0240568226924047!GO:0035035;histone acetyltransferase binding;0.0241719167882783!GO:0040008;regulation of growth;0.0241719167882783!GO:0051261;protein depolymerization;0.02420714214425!GO:0006118;electron transport;0.025754835314714!GO:0006672;ceramide metabolic process;0.0258986832505077!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0261381448596955!GO:0008601;protein phosphatase type 2A regulator activity;0.0266632578686021!GO:0000278;mitotic cell cycle;0.0285246383146959!GO:0008144;drug binding;0.028853887879727!GO:0000139;Golgi membrane;0.0290023427964867!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0301752021361382!GO:0045792;negative regulation of cell size;0.0301752021361382!GO:0031901;early endosome membrane;0.0309785685916502!GO:0006611;protein export from nucleus;0.0309903170332244!GO:0000314;organellar small ribosomal subunit;0.0309903170332244!GO:0005763;mitochondrial small ribosomal subunit;0.0309903170332244!GO:0015036;disulfide oxidoreductase activity;0.0313367573257824!GO:0005952;cAMP-dependent protein kinase complex;0.0313367573257824!GO:0005832;chaperonin-containing T-complex;0.0331009190840037!GO:0030660;Golgi-associated vesicle membrane;0.0334574665870728!GO:0019207;kinase regulator activity;0.0338379954502694!GO:0048500;signal recognition particle;0.0345365050700946!GO:0045893;positive regulation of transcription, DNA-dependent;0.0348149876040161!GO:0022406;membrane docking;0.0351753379218803!GO:0048278;vesicle docking;0.0351753379218803!GO:0008147;structural constituent of bone;0.0351753379218803!GO:0006892;post-Golgi vesicle-mediated transport;0.0356315962807424!GO:0009117;nucleotide metabolic process;0.0358839056348674!GO:0008553;hydrogen-exporting ATPase activity, phosphorylative mechanism;0.0360886701510801!GO:0016830;carbon-carbon lyase activity;0.0361796748124853!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0366465279893229!GO:0006470;protein amino acid dephosphorylation;0.0369562866292961!GO:0008603;cAMP-dependent protein kinase regulator activity;0.0369562866292961!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0369562866292961!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0369562866292961!GO:0033043;regulation of organelle organization and biogenesis;0.0369562866292961!GO:0005862;muscle thin filament tropomyosin;0.03740771472975!GO:0005938;cell cortex;0.0376816927060584!GO:0005868;cytoplasmic dynein complex;0.0377798302053814!GO:0030137;COPI-coated vesicle;0.0377851457465595!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0378337100355012!GO:0030119;AP-type membrane coat adaptor complex;0.0378797834015805!GO:0008022;protein C-terminus binding;0.0387418558765091!GO:0008073;ornithine decarboxylase inhibitor activity;0.0392108195788003!GO:0016363;nuclear matrix;0.0394258921807498!GO:0030308;negative regulation of cell growth;0.0394258921807498!GO:0051017;actin filament bundle formation;0.0396599179243066!GO:0046519;sphingoid metabolic process;0.0397310970351122!GO:0009081;branched chain family amino acid metabolic process;0.0405717005386051!GO:0005694;chromosome;0.0408552178704014!GO:0030663;COPI coated vesicle membrane;0.0409556550704781!GO:0030126;COPI vesicle coat;0.0409556550704781!GO:0005853;eukaryotic translation elongation factor 1 complex;0.041103841101427!GO:0007019;microtubule depolymerization;0.04119985667167!GO:0009066;aspartate family amino acid metabolic process;0.0414547731704759!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0414547731704759!GO:0055083;monovalent inorganic anion homeostasis;0.0414547731704759!GO:0055064;chloride ion homeostasis;0.0414547731704759!GO:0030644;cellular chloride ion homeostasis;0.0414547731704759!GO:0009966;regulation of signal transduction;0.0419430440941231!GO:0031123;RNA 3'-end processing;0.043289742936852!GO:0042979;ornithine decarboxylase regulator activity;0.0433171557300285!GO:0000062;acyl-CoA binding;0.0433777583756501!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0435117498314923!GO:0050749;apolipoprotein E receptor binding;0.0435117498314923!GO:0030131;clathrin adaptor complex;0.0436796742783759!GO:0008238;exopeptidase activity;0.0437268991339032!GO:0043681;protein import into mitochondrion;0.0439544582948625!GO:0006904;vesicle docking during exocytosis;0.0440563789397529!GO:0030384;phosphoinositide metabolic process;0.0440563789397529!GO:0006661;phosphatidylinositol biosynthetic process;0.0450263885274613!GO:0007040;lysosome organization and biogenesis;0.0450263885274613!GO:0022403;cell cycle phase;0.0450263885274613!GO:0046483;heterocycle metabolic process;0.0450263885274613!GO:0016050;vesicle organization and biogenesis;0.0451359559703965!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0451359559703965!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0451359559703965!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0461084247550119!GO:0016624;oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor;0.0465047861112346!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0465047861112346!GO:0065009;regulation of a molecular function;0.0466824298538351!GO:0030522;intracellular receptor-mediated signaling pathway;0.0477529031215495!GO:0016584;nucleosome positioning;0.0495939080939392
 |sample_id=10001
 |sample_note=
@@ Line 79: / Line 92: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:10001-101A3;search_select_hide=table117:10001-101A3
 }}

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FF:10001-101A3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 13:43, 24 September 2021

CNhs10609

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0