FFCP PHASE1:Hg19::chr3:184017555..184017556,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5708 | |EntrezGene=5708 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9559 | |HGNC=9559 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-135bp_to_ENST00000445558_5end | |association_with_transcript=-135bp_to_ENST00000445558_5end | ||
|cluster_id=chr3:184017555..184017556,+ | |||
|description=CAGE_peak_18_at_PSMD2_5end | |description=CAGE_peak_18_at_PSMD2_5end | ||
|id=chr3:184017555..184017556,+ | |id=chr3:184017555..184017556,+ | ||
|ontology_enrichment_celltype=CL:0002621!1.82e-12!3;CL:0002589!3.25e-08!2 | |ontology_enrichment_celltype=CL:0002621!1.82e-12!3;CL:0002589!3.25e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0002593;3.44e-21;2!CL:0002166;1.31e-14;3!CL:0000244;3.42e-11;4!CL:0000731;3.42e-11;4!CL:0002595;2.63e-09;5 | |ontology_enrichment_celltype_v019=CL:0002593;3.44e-21;2!CL:0002166;1.31e-14;3!CL:0000244;3.42e-11;4!CL:0000731;3.42e-11;4!CL:0002595;2.63e-09;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0002593,3.11e-21,2;CL:0002166,1.40e-14,3;CL:0000244,3.42e-11,4;CL:0000731,3.42e-11,4;CL:0002595,2.53e-09,5 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:2394!5.20e-09!14 | |ontology_enrichment_disease=DOID:2394!5.20e-09!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;2.66e-12;14!DOID:120;7.45e-07;27 | |ontology_enrichment_disease_v019=DOID:2394;2.66e-12;14!DOID:120;7.45e-07;27 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,2.66e-12,14;DOID:120,7.45e-07,27 | |||
|ontology_enrichment_uberon=UBERON:0001949!1.82e-12!3;UBERON:0001529!3.25e-08!2;UBERON:0007204!3.25e-08!2;UBERON:0004573!1.50e-07!33;UBERON:0004571!1.50e-07!33;UBERON:0001637!6.08e-07!42;UBERON:0003509!6.08e-07!42;UBERON:0004572!6.08e-07!42;UBERON:0000486!6.91e-07!82 | |ontology_enrichment_uberon=UBERON:0001949!1.82e-12!3;UBERON:0001529!3.25e-08!2;UBERON:0007204!3.25e-08!2;UBERON:0004573!1.50e-07!33;UBERON:0004571!1.50e-07!33;UBERON:0001637!6.08e-07!42;UBERON:0003509!6.08e-07!42;UBERON:0004572!6.08e-07!42;UBERON:0000486!6.91e-07!82 | ||
|ontology_enrichment_uberon_v019=UBERON:0002456;3.44e-21;2!UBERON:0001708;2.66e-11;4!UBERON:0008895;2.66e-11;4!UBERON:0003834;2.63e-09;5!UBERON:0011159;2.63e-09;5!UBERON:0001533;2.63e-09;5!UBERON:0000365;3.22e-09;5!UBERON:0002118;3.22e-09;5!UBERON:0005910;6.78e-08;6!UBERON:0003513;5.22e-07;7 | |ontology_enrichment_uberon_v019=UBERON:0002456;3.44e-21;2!UBERON:0001708;2.66e-11;4!UBERON:0008895;2.66e-11;4!UBERON:0003834;2.63e-09;5!UBERON:0011159;2.63e-09;5!UBERON:0001533;2.63e-09;5!UBERON:0000365;3.22e-09;5!UBERON:0002118;3.22e-09;5!UBERON:0005910;6.78e-08;6!UBERON:0003513;5.22e-07;7 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002456,3.11e-21,2;UBERON:0001708,2.80e-11,4;UBERON:0008895,2.80e-11,4;UBERON:0003834,2.53e-09,5;UBERON:0001533,2.53e-09,5;UBERON:0011159,2.74e-09,5;UBERON:0000365,3.22e-09,5;UBERON:0002118,3.49e-09,5;UBERON:0010188,5.92e-08,6;UBERON:0002539,5.92e-08,6;UBERON:0008816,5.92e-08,6;UBERON:0005910,6.78e-08,6;UBERON:0003513,5.08e-07,7 | |||
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| ||
|short_description=p18@PSMD2 | |short_description=p18@PSMD2 | ||
}} | }} |
Latest revision as of 01:47, 17 September 2015
Short description: | p18@PSMD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_PSMD2_5end |
Coexpression cluster: | NA |
Association with transcript: | -135bp_to_ENST00000445558_5end |
EntrezGene: | PSMD2 |
HGNC: | 9559 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the internal thoracic artery | 3.11e-21 | 2 |
epithelial cell of Malassez | 1.40e-14 | 3 |
transitional epithelial cell | 3.42e-11 | 4 |
urothelial cell | 3.42e-11 | 4 |
smooth muscle cell of the subclavian artery | 2.53e-09 | 5 |
Ontology term | p-value | n |
---|---|---|
internal thoracic artery | 3.11e-21 | 2 |
jaw skeleton | 2.80e-11 | 4 |
splanchnocranium | 2.80e-11 | 4 |
thoracic segment blood vessel | 2.53e-09 | 5 |
subclavian artery | 2.53e-09 | 5 |
primary subdivision of cranial skeletal system | 2.74e-09 | 5 |
urothelium | 3.22e-09 | 5 |
right ovary | 3.49e-09 | 5 |
protuberance | 5.92e-08 | 6 |
pharyngeal arch | 5.92e-08 | 6 |
embryonic head | 5.92e-08 | 6 |
transitional epithelium | 6.78e-08 | 6 |
trunk blood vessel | 5.08e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.66e-12 | 14 |
female reproductive organ cancer | 7.45e-07 | 27 |